Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.51467 * 2 1 4 4 C 1.53296 * 109.50912 * 239.89960 * 2 1 3 5 5 N 1.47153 * 108.38782 * 187.77714 * 4 2 1 6 6 C 1.34776 * 120.98442 * 230.51608 * 5 4 2 7 7 O 1.21282 * 119.99628 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00321 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47289 * 179.97438 * 8 6 5 10 10 N 1.29954 * 126.28649 * 90.02479 * 9 8 6 11 11 O 1.21294 * 110.24985 * 179.73386 * 10 9 8 12 12 C 1.33643 * 109.81343 * 359.97438 * 11 10 9 13 13 C 1.50698 * 126.55336 * 180.02562 * 12 11 10 14 14 S 1.81004 * 109.46990 * 270.02066 * 13 12 11 15 15 C 1.76203 * 100.00191 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99536 * 0.02562 * 15 14 13 17 17 C 1.38790 * 119.99981 * 180.02562 * 15 14 13 18 18 N 1.31634 * 120.00265 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47135 * 89.99948 * 19 17 15 21 21 H 1.48500 * 109.46811 * 209.99882 * 19 17 15 22 22 H 1.48500 * 109.46932 * 329.99648 * 19 17 15 23 23 N 1.31132 * 106.89433 * 359.97438 * 12 11 10 24 24 C 1.47155 * 118.03434 * 50.78301 * 5 4 2 25 25 C 1.53712 * 108.16191 * 309.16357 * 24 5 4 26 26 H 1.09000 * 109.44142 * 172.37678 * 25 24 5 27 27 C 1.52999 * 109.65670 * 292.57193 * 25 24 5 28 28 O 1.42961 * 109.14991 * 52.53777 * 25 24 5 29 29 H 1.08992 * 109.47601 * 180.10386 * 1 2 3 30 30 H 1.09005 * 109.46670 * 300.10099 * 1 2 3 31 31 H 1.08994 * 109.47044 * 60.09304 * 1 2 3 32 32 H 1.08995 * 109.68288 * 68.05083 * 4 2 1 33 33 H 1.09004 * 109.71208 * 307.51470 * 4 2 1 34 34 H 1.08999 * 109.47208 * 59.99446 * 8 6 5 35 35 H 1.09011 * 109.47043 * 299.99480 * 8 6 5 36 36 H 1.09002 * 109.47410 * 30.02089 * 13 12 11 37 37 H 1.08999 * 109.47451 * 150.02229 * 13 12 11 38 38 H 0.97005 * 119.99742 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.67640 * 68.94275 * 24 5 4 40 40 H 1.09001 * 109.67713 * 189.49491 * 24 5 4 41 41 H 1.09004 * 109.47251 * 179.74324 * 27 25 24 42 42 H 1.09006 * 109.47277 * 299.74037 * 27 25 24 43 43 H 1.09000 * 109.47354 * 59.73946 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5011 -0.8759 -1.1341 6 6 4.3192 -0.5034 -2.1383 7 8 3.8552 -0.0361 -3.1568 8 6 5.8104 -0.6676 -1.9957 9 6 6.4916 -0.1801 -3.2485 10 7 6.9062 1.0300 -3.4773 11 8 7.4164 1.0983 -4.5756 12 6 7.3749 -0.0981 -5.1696 13 6 7.9023 -0.4388 -6.5396 14 16 6.5981 -0.1843 -7.7686 15 6 7.4640 -0.6429 -9.2331 16 1 8.4946 -0.9603 -9.1740 17 6 6.8215 -0.5962 -10.4625 18 7 5.5652 -0.2097 -10.5344 19 14 7.7393 -1.0830 -12.0150 20 1 7.5641 -2.5375 -12.2581 21 1 7.1997 -0.3198 -13.1689 22 1 9.1837 -0.7788 -11.8521 23 7 6.7886 -0.9193 -4.3320 24 6 4.0402 -1.4513 0.1083 25 6 3.4313 -0.6863 1.2944 26 1 3.7092 -1.1798 2.2256 27 6 3.9531 0.7520 1.3016 28 8 2.0075 -0.6770 1.1652 29 1 -0.3634 -1.0276 0.0019 30 1 -0.3633 0.5154 0.8891 31 1 -0.3633 0.5124 -0.8908 32 1 1.8030 -0.1389 -2.1377 33 1 1.5757 -1.7073 -1.3223 34 1 6.0468 -1.7202 -1.8400 35 1 6.1599 -0.0866 -1.1421 36 1 8.7513 0.2039 -6.7723 37 1 8.2201 -1.4813 -6.5577 38 1 5.1162 -0.1775 -11.3936 39 1 3.7717 -2.5058 0.1712 40 1 5.1251 -1.3468 0.1206 41 1 3.5160 1.2929 2.1410 42 1 5.0387 0.7442 1.4002 43 1 3.6766 1.2436 0.3689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350757813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -35.236825 kcal Electronic energy + Delta-G solvation = -27109.144740 eV Core-core repulsion = 23090.315269 eV Total energy + Delta-G solvation = -4018.829471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.66712 -41.72433 -39.80598 -37.10180 -36.00827 -34.99031 -34.61708 -34.46540 -31.71521 -31.07742 -29.95066 -28.07297 -27.70599 -27.09455 -24.79845 -23.82897 -23.14750 -21.55082 -20.23591 -19.81357 -19.38872 -18.50400 -18.37411 -17.74658 -17.15443 -16.99396 -16.90390 -16.40470 -16.11858 -15.91703 -15.71506 -15.30338 -14.98270 -14.84963 -14.75303 -14.37102 -14.04848 -13.68707 -13.36359 -13.29043 -13.19727 -13.15001 -13.01017 -12.96356 -12.88475 -12.84630 -12.64651 -12.47793 -12.19240 -12.16177 -11.96356 -11.66255 -11.20001 -11.16186 -11.11091 -10.89094 -10.38683 -9.67292 -8.78542 -8.38900 -6.19887 -0.13476 0.85451 1.34918 1.37021 1.44674 1.52935 1.59778 1.73635 1.79523 2.22405 2.48822 2.68740 2.86773 2.97904 3.24783 3.29718 3.57534 3.74262 3.83090 3.91629 3.98114 4.03819 4.09548 4.11144 4.28624 4.33005 4.34772 4.41399 4.49712 4.62522 4.64415 4.69091 4.79114 4.83406 4.88224 4.94383 5.01127 5.14112 5.26533 5.30711 5.41462 6.09547 6.16078 6.17940 6.89803 7.00498 7.03182 8.70796 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002227 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.971447 B =12570.607622 C =13448.436181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 H 0.059 0.941 4 C 0.081 3.919 5 N -0.607 5.607 6 C 0.518 3.482 7 O -0.582 6.582 8 C -0.042 4.042 9 C 0.184 3.816 10 N -0.394 5.394 11 O 0.069 5.931 12 C 0.222 3.778 13 C -0.016 4.016 14 S -0.161 6.161 15 C -0.534 4.534 16 H 0.094 0.906 17 C 0.014 3.986 18 N -0.912 5.912 19 Si 1.002 2.998 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.254 1.254 23 N -0.489 5.489 24 C 0.067 3.933 25 C 0.072 3.928 26 H 0.146 0.854 27 C -0.186 4.186 28 O -0.381 6.381 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.272 0.728 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -3.164 28.013 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.077 0.923 4 C -0.042 4.042 5 N -0.341 5.341 6 C 0.306 3.694 7 O -0.461 6.461 8 C -0.083 4.083 9 C -0.090 4.090 10 N -0.105 5.105 11 O 0.014 5.986 12 C 0.001 3.999 13 C -0.165 4.165 14 S 0.065 5.935 15 C -0.682 4.682 16 H 0.112 0.888 17 C -0.191 4.191 18 N -0.549 5.549 19 Si 0.824 3.176 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.178 1.178 23 N -0.224 5.224 24 C -0.054 4.054 25 C 0.014 3.986 26 H 0.163 0.837 27 C -0.243 4.243 28 O -0.300 6.300 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.477 -2.344 28.366 28.675 hybrid contribution 1.376 -0.228 -1.842 2.311 sum -2.101 -2.572 26.524 26.731 Atomic orbital electron populations 1.21734 0.90980 1.03731 1.03464 1.22403 0.96441 0.95117 0.84057 0.92261 1.22391 0.79745 1.02330 0.99744 1.48104 1.06648 1.62439 1.16911 1.20637 0.89217 0.76981 0.82571 1.90806 1.78096 1.46413 1.30813 1.20178 0.89270 1.07355 0.91463 1.25543 0.99765 0.86005 0.97678 1.74493 1.15805 1.21279 0.98878 1.85253 1.57596 1.34292 1.21492 1.28049 0.94323 0.80075 0.97425 1.21779 1.02237 1.07128 0.85393 1.85522 1.18307 1.88606 1.01083 1.23100 1.01059 1.52404 0.91623 0.88818 1.26163 0.95911 0.94222 1.02777 1.70178 1.12137 1.45349 1.27193 0.84892 0.78680 0.78364 0.75694 1.19359 1.20478 1.17794 1.71859 1.16424 1.32100 1.01996 1.23028 1.01552 0.99018 0.81813 1.22916 0.80268 0.96157 0.99278 0.83667 1.22419 1.03341 0.96759 1.01803 1.88018 1.21880 1.77029 1.43051 0.91095 0.90685 0.90374 0.90610 0.89758 0.82266 0.82379 0.85476 0.85572 0.91887 0.88407 0.85739 0.91281 0.89213 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.57 71.98 0.69 -1.14 16 2 C 0.08 1.27 3.01 30.69 0.09 1.36 16 3 H 0.06 1.06 6.26 -2.39 -0.01 1.05 16 4 C 0.08 1.62 5.92 86.35 0.51 2.13 16 5 N -0.61 -11.67 2.53 -816.54 -2.06 -13.74 16 6 C 0.52 14.05 7.70 87.66 0.68 14.73 16 7 O -0.58 -23.44 15.50 -3.04 -0.05 -23.49 16 8 C -0.04 -0.89 4.70 29.10 0.14 -0.75 16 9 C 0.18 6.11 6.71 138.46 0.93 7.04 16 10 N -0.39 -14.33 12.16 -60.33 -0.73 -15.07 16 11 O 0.07 2.68 11.31 74.84 0.85 3.53 16 12 C 0.22 8.65 7.77 88.38 0.69 9.34 16 13 C -0.02 -0.64 6.30 71.24 0.45 -0.19 16 14 S -0.16 -8.64 21.42 -56.49 -1.21 -9.85 16 15 C -0.53 -29.38 9.50 67.95 0.65 -28.73 16 16 H 0.09 4.71 7.80 -2.91 -0.02 4.69 16 17 C 0.01 0.79 5.49 84.85 0.47 1.25 16 18 N -0.91 -55.09 13.22 21.65 0.29 -54.80 16 19 Si 1.00 42.60 29.55 68.60 2.03 44.63 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 23 N -0.49 -18.68 11.55 -303.20 -3.50 -22.19 16 24 C 0.07 0.63 5.96 86.49 0.52 1.15 16 25 C 0.07 0.66 3.93 30.83 0.12 0.78 16 26 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 27 C -0.19 -1.90 8.82 71.98 0.63 -1.26 16 28 O -0.38 -5.66 10.22 -148.98 -1.52 -7.18 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.95 7.08 -2.39 -0.02 1.94 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.16 2.24 8.00 -2.39 -0.02 2.22 16 35 H 0.16 2.00 7.67 -2.38 -0.02 1.98 16 36 H 0.13 4.35 8.14 -2.39 -0.02 4.33 16 37 H 0.13 4.57 8.14 -2.40 -0.02 4.55 16 38 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.12 0.45 6.05 -2.39 -0.01 0.44 16 41 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 42 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.04 0.59 6.11 -2.39 -0.01 0.58 16 Total: -1.00 -81.82 372.88 1.67 -80.16 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.03 Total: 12.30 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.55 Total: 5.71 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -6.01 Total: -105.79 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.72 Total: -27.15 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.21 Total: -9.85 kcal Total: -81.82 1.67 -80.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350757813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.918 kcal (2) G-P(sol) polarization free energy of solvation -81.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds