Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21293 * 120.00230 * 2 1 4 4 C 1.46792 * 119.99664 * 179.97438 * 2 1 3 5 5 C 1.40024 * 120.21858 * 0.02562 * 4 2 1 6 6 C 1.37773 * 119.86584 * 179.97438 * 5 4 2 7 7 Cl 1.73605 * 119.84230 * 180.02562 * 6 5 4 8 8 C 1.38724 * 120.31493 * 0.02683 * 6 5 4 9 9 C 1.38051 * 120.43898 * 359.67250 * 8 6 5 10 10 C 1.38683 * 120.12656 * 0.60249 * 9 8 6 11 11 O 1.35619 * 120.15894 * 179.69596 * 10 9 8 12 12 C 1.42900 * 116.99816 * 359.72382 * 11 10 9 13 13 C 1.53002 * 109.46918 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.46823 * 55.00822 * 13 12 11 15 15 O 1.42899 * 109.47103 * 295.00344 * 13 12 11 16 16 C 1.53000 * 109.46726 * 175.00484 * 13 12 11 17 17 N 1.46904 * 109.46815 * 180.45976 * 16 13 12 18 18 C 1.46899 * 110.99898 * 199.84806 * 17 16 13 19 19 C 1.46907 * 110.99778 * 75.89878 * 17 16 13 20 20 C 1.50705 * 109.46801 * 190.00021 * 19 17 16 21 21 H 1.08000 * 120.00039 * 359.97438 * 20 19 17 22 22 C 1.37881 * 119.99700 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00014 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99637 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46790 * 90.00184 * 24 22 20 26 26 H 1.48497 * 109.46948 * 209.99634 * 24 22 20 27 27 H 1.48496 * 109.47396 * 330.00182 * 24 22 20 28 28 H 1.09006 * 109.47520 * 270.00294 * 1 2 3 29 29 H 1.08999 * 109.47458 * 29.99990 * 1 2 3 30 30 H 1.09001 * 109.47479 * 149.99783 * 1 2 3 31 31 H 1.07999 * 120.06262 * 359.96341 * 5 4 2 32 32 H 1.08002 * 119.78040 * 180.02562 * 8 6 5 33 33 H 1.08003 * 119.93993 * 180.30511 * 9 8 6 34 34 H 1.09001 * 109.46831 * 60.00360 * 12 11 10 35 35 H 1.08996 * 109.47545 * 300.00190 * 12 11 10 36 36 H 0.96698 * 114.00245 * 299.99745 * 15 13 12 37 37 H 1.09000 * 109.47349 * 300.45489 * 16 13 12 38 38 H 1.09001 * 109.47706 * 60.46216 * 16 13 12 39 39 H 1.08999 * 109.47104 * 64.82506 * 18 17 16 40 40 H 1.09004 * 109.47084 * 184.82138 * 18 17 16 41 41 H 1.09003 * 109.47573 * 304.82062 * 18 17 16 42 42 H 1.09002 * 109.46729 * 309.99402 * 19 17 16 43 43 H 1.08997 * 109.47420 * 69.99907 * 19 17 16 44 44 H 0.96996 * 119.99686 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2408 -1.2713 0.0006 5 6 1.5453 -2.4866 0.0006 6 6 2.2414 -3.6755 0.0006 7 17 1.3784 -5.1818 -0.0001 8 6 3.6286 -3.6747 0.0011 9 6 4.3273 -2.4840 -0.0051 10 6 3.6451 -1.2766 0.0006 11 8 4.3309 -0.1066 0.0007 12 6 5.7574 -0.1907 0.0009 13 6 6.3514 1.2193 0.0003 14 1 5.9493 1.7832 0.8419 15 8 6.0117 1.8788 -1.2210 16 6 7.8737 1.1313 0.1261 17 7 8.4432 2.4855 0.1366 18 6 9.8694 2.4595 -0.2143 19 6 8.2329 3.1348 1.4375 20 6 8.6040 4.5920 1.3373 21 1 8.9608 4.9953 0.4010 22 6 8.4880 5.4104 2.4409 23 7 8.0531 4.9195 3.5808 24 14 8.9487 7.2164 2.3168 25 1 7.7560 8.0050 1.9159 26 1 9.4377 7.6942 3.6351 27 1 10.0185 7.3858 1.3009 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.4653 -2.4918 0.0008 32 1 4.1656 -4.6117 0.0007 33 1 5.4073 -2.4928 -0.0096 34 1 6.0899 -0.7250 -0.8891 35 1 6.0898 -0.7251 0.8908 36 1 6.3381 1.4314 -2.0137 37 1 8.1328 0.6211 1.0538 38 1 8.2767 0.5743 -0.7198 39 1 9.9842 2.1177 -1.2430 40 1 10.2861 3.4619 -0.1159 41 1 10.3961 1.7797 0.4554 42 1 7.1847 3.0457 1.7228 43 1 8.8566 2.6520 2.1897 44 1 7.9712 5.4953 4.3570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414166742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -122.116535 kcal Electronic energy + Delta-G solvation = -27018.070974 eV Core-core repulsion = 22961.137659 eV Total energy + Delta-G solvation = -4056.933315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71372 -40.03071 -39.27752 -38.55276 -37.23875 -36.85027 -34.63654 -33.25197 -32.06942 -30.72235 -30.26322 -29.37114 -27.74194 -25.69242 -25.11494 -23.71506 -22.75916 -21.85255 -21.00425 -19.31625 -18.63106 -18.03343 -17.64027 -17.55815 -16.96475 -16.69937 -16.21134 -16.19077 -16.03751 -15.76096 -15.64768 -15.42702 -15.04898 -14.93601 -14.42421 -14.24482 -14.04096 -13.95796 -13.44413 -13.17512 -13.05726 -12.98988 -12.92746 -12.72380 -12.68915 -12.61367 -12.55898 -12.30979 -12.16326 -11.98913 -11.68381 -11.58121 -11.35974 -10.94624 -10.67346 -10.63105 -10.28136 -9.27206 -8.98450 -8.22770 -6.32159 -0.46660 0.09671 1.10120 1.36944 1.37664 1.41038 1.51066 1.92474 2.38695 2.53358 3.04771 3.09676 3.21601 3.48812 3.62089 3.73095 3.81919 3.92033 3.95424 4.12464 4.19273 4.24881 4.28449 4.31115 4.47573 4.52187 4.60010 4.62303 4.65896 4.75440 4.82761 4.96392 4.98467 5.03814 5.07892 5.16833 5.24416 5.28193 5.38004 5.62501 6.03912 6.23014 6.31655 6.60934 6.65000 6.83611 6.99145 7.37066 8.88646 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.002293 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.872857 B =12210.722341 C =13119.234046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.380 3.620 3 O -0.490 6.490 4 C -0.221 4.221 5 C -0.015 4.015 6 C -0.096 4.096 7 Cl -0.057 7.057 8 C -0.029 4.029 9 C -0.213 4.213 10 C 0.166 3.834 11 O -0.301 6.301 12 C 0.029 3.971 13 C 0.124 3.876 14 H 0.058 0.942 15 O -0.556 6.556 16 C 0.033 3.967 17 N -0.545 5.545 18 C 0.040 3.960 19 C 0.208 3.792 20 C -0.523 4.523 21 H 0.062 0.938 22 C -0.002 4.002 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.277 1.277 26 H -0.279 1.279 27 H -0.261 1.261 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.177 0.823 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.381 0.619 37 H 0.039 0.961 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.017 0.983 42 H -0.003 1.003 43 H -0.036 1.036 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.665 -24.715 -9.887 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.260 3.740 3 O -0.367 6.367 4 C -0.223 4.223 5 C -0.033 4.033 6 C -0.123 4.123 7 Cl -0.029 7.029 8 C -0.048 4.048 9 C -0.232 4.232 10 C 0.118 3.882 11 O -0.212 6.212 12 C -0.047 4.047 13 C 0.063 3.937 14 H 0.076 0.924 15 O -0.362 6.362 16 C -0.096 4.096 17 N -0.269 5.269 18 C -0.108 4.108 19 C 0.082 3.918 20 C -0.561 4.561 21 H 0.080 0.920 22 C -0.200 4.200 23 N -0.577 5.577 24 Si 0.794 3.206 25 H -0.203 1.203 26 H -0.204 1.204 27 H -0.185 1.185 28 H 0.132 0.868 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.194 0.806 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.229 0.771 37 H 0.057 0.943 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.015 0.985 43 H -0.018 1.018 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.036 -23.342 -9.664 28.429 hybrid contribution 0.970 0.039 0.862 1.298 sum -12.066 -23.303 -8.802 27.678 Atomic orbital electron populations 1.22272 0.90179 1.06243 1.06181 1.22972 0.93537 0.86819 0.70633 1.90704 1.73167 1.35467 1.37394 1.20132 0.90923 0.96277 1.14939 1.21403 1.01786 0.87909 0.92236 1.20760 0.92878 0.87713 1.10968 1.98383 1.76571 1.30675 1.97240 1.21379 0.92040 0.99258 0.92088 1.21480 1.02116 0.90365 1.09211 1.19864 0.91691 0.85955 0.90703 1.86385 1.20702 1.28092 1.86060 1.23779 0.77830 0.98682 1.04359 1.21668 0.93346 0.90734 0.87920 0.92427 1.86726 1.79639 1.54359 1.15464 1.22646 0.93814 0.90959 1.02134 1.61850 1.16002 1.17125 1.31970 1.22252 0.87207 1.01178 1.00163 1.19392 0.93959 0.93821 0.84670 1.21486 1.43238 0.94898 0.96491 0.91966 1.25953 0.95278 1.03907 0.94850 1.70085 1.47957 1.37716 1.01896 0.85377 0.78700 0.78823 0.77697 1.20315 1.20446 1.18482 0.86833 0.89557 0.86578 0.80603 0.81559 0.81955 0.87738 0.89351 0.77068 0.94310 0.87186 0.89709 0.92737 0.96460 0.98456 1.01795 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 9.75 71.23 0.69 -2.04 16 2 C 0.38 9.79 7.21 27.92 0.20 9.99 16 3 O -0.49 -18.69 15.91 17.89 0.28 -18.41 16 4 C -0.22 -4.92 5.88 -20.07 -0.12 -5.04 16 5 C -0.01 -0.22 9.13 22.59 0.21 -0.01 16 6 C -0.10 -1.33 6.31 22.28 0.14 -1.19 16 7 Cl -0.06 -0.68 28.94 -2.72 -0.08 -0.76 16 8 C -0.03 -0.38 9.81 22.34 0.22 -0.16 16 9 C -0.21 -3.58 9.03 22.33 0.20 -3.38 16 10 C 0.17 4.10 6.71 22.91 0.15 4.25 16 11 O -0.30 -9.54 8.17 -64.59 -0.53 -10.06 16 12 C 0.03 0.72 4.37 71.98 0.31 1.04 16 13 C 0.12 4.32 3.31 30.59 0.10 4.42 16 14 H 0.06 2.65 6.78 -2.39 -0.02 2.63 16 15 O -0.56 -20.60 13.18 -144.33 -1.90 -22.51 16 16 C 0.03 1.09 4.66 86.30 0.40 1.49 16 17 N -0.55 -23.75 4.56 -927.00 -4.22 -27.97 16 18 C 0.04 1.48 9.37 127.69 1.20 2.68 16 19 C 0.21 11.54 4.55 85.56 0.39 11.93 16 20 C -0.52 -31.09 8.39 25.60 0.21 -30.87 16 21 H 0.06 3.63 7.16 -2.91 -0.02 3.61 16 22 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 23 N -0.94 -58.74 13.29 21.45 0.28 -58.45 16 24 Si 0.97 46.34 29.54 68.60 2.03 48.37 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 28 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.12 0.82 6.47 -2.39 -0.02 0.80 16 31 H 0.18 1.40 6.36 -2.91 -0.02 1.38 16 32 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 34 H 0.10 1.78 7.65 -2.39 -0.02 1.76 16 35 H 0.09 1.89 7.67 -2.39 -0.02 1.87 16 36 H 0.38 9.82 9.05 -74.06 -0.67 9.15 16 37 H 0.04 1.27 8.00 -2.39 -0.02 1.25 16 38 H 0.11 2.60 7.94 -2.39 -0.02 2.58 16 39 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.05 2.27 6.66 -2.39 -0.02 2.26 16 41 H 0.02 0.60 8.13 -2.39 -0.02 0.58 16 42 H 0.00 -0.16 6.63 -2.39 -0.02 -0.18 16 43 H -0.04 -2.10 8.12 -2.39 -0.02 -2.12 16 44 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -84.48 382.54 1.01 -83.48 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.36 Total: 12.91 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.78 Total: -6.59 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -3.94 Total: -86.42 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -2.15 Total: -50.98 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -84.48 1.01 -83.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414166742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.639 kcal (2) G-P(sol) polarization free energy of solvation -84.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds