Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21298 * 119.99715 * 2 1 4 4 C 1.46787 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.40018 * 120.21772 * 0.02562 * 4 2 1 6 6 C 1.37778 * 119.86835 * 179.97438 * 5 4 2 7 7 Cl 1.73602 * 119.84627 * 180.02562 * 6 5 4 8 8 C 1.38719 * 120.31304 * 0.02746 * 6 5 4 9 9 C 1.38055 * 120.44144 * 359.67706 * 8 6 5 10 10 C 1.38687 * 120.12294 * 0.59680 * 9 8 6 11 11 O 1.35615 * 120.15838 * 179.70455 * 10 9 8 12 12 C 1.42903 * 116.99721 * 359.72518 * 11 10 9 13 13 C 1.53000 * 109.47039 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47253 * 305.00429 * 13 12 11 15 15 O 1.42900 * 109.47194 * 64.99836 * 13 12 11 16 16 C 1.52998 * 109.47107 * 184.99933 * 13 12 11 17 17 N 1.46899 * 109.46858 * 175.04575 * 16 13 12 18 18 C 1.46903 * 110.99991 * 163.94840 * 17 16 13 19 19 C 1.46902 * 111.00138 * 287.89426 * 17 16 13 20 20 C 1.50702 * 109.47206 * 170.00004 * 19 17 16 21 21 H 1.07990 * 119.99891 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99588 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00136 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99737 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47068 * 60.00158 * 24 22 20 26 26 H 1.48498 * 109.46985 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46869 * 300.00247 * 24 22 20 28 28 H 1.09007 * 109.47001 * 240.00606 * 1 2 3 29 29 H 1.09003 * 109.47354 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47176 * 120.00652 * 1 2 3 31 31 H 1.08003 * 120.06777 * 359.95716 * 5 4 2 32 32 H 1.08001 * 119.78545 * 179.97438 * 8 6 5 33 33 H 1.08001 * 119.94100 * 180.30399 * 9 8 6 34 34 H 1.08996 * 109.47308 * 60.00060 * 12 11 10 35 35 H 1.09001 * 109.46918 * 299.99929 * 12 11 10 36 36 H 0.96698 * 114.00266 * 60.00042 * 15 13 12 37 37 H 1.08997 * 109.47560 * 55.04389 * 16 13 12 38 38 H 1.08998 * 109.46907 * 295.04026 * 16 13 12 39 39 H 1.08998 * 109.47439 * 189.27288 * 18 17 16 40 40 H 1.08994 * 109.47470 * 69.26701 * 18 17 16 41 41 H 1.09004 * 109.46549 * 309.26905 * 18 17 16 42 42 H 1.08997 * 109.47475 * 290.00611 * 19 17 16 43 43 H 1.09000 * 109.46537 * 50.00068 * 19 17 16 44 44 H 0.97003 * 119.99947 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2712 0.0006 5 6 1.5455 -2.4865 0.0006 6 6 2.2416 -3.6754 0.0006 7 17 1.3788 -5.1818 -0.0001 8 6 3.6288 -3.6745 0.0011 9 6 4.3275 -2.4839 -0.0050 10 6 3.6453 -1.2764 0.0007 11 8 4.3309 -0.1064 0.0007 12 6 5.7575 -0.1905 0.0008 13 6 6.3515 1.2195 0.0015 14 1 5.9493 1.7836 -0.8401 15 8 6.0115 1.8790 1.2228 16 6 7.8738 1.1316 -0.1241 17 7 8.4341 2.4844 -0.2428 18 6 9.8803 2.4796 0.0149 19 6 8.1360 3.0641 -1.5592 20 6 8.5051 4.5252 -1.5600 21 1 8.9200 4.9777 -0.6716 22 6 8.3140 5.2839 -2.6953 23 7 7.8091 4.7326 -3.7773 24 14 8.7722 7.0949 -2.6964 25 1 10.2219 7.2389 -2.4085 26 1 8.4707 7.6809 -4.0272 27 1 7.9877 7.8046 -1.6543 28 1 -0.3633 -0.5138 0.8901 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 0.4655 -2.4918 0.0009 32 1 4.1659 -4.6115 0.0016 33 1 5.4075 -2.4926 -0.0095 34 1 6.0900 -0.7248 -0.8891 35 1 6.0899 -0.7248 0.8909 36 1 6.3379 1.4316 2.0155 37 1 8.1324 0.5522 -1.0103 38 1 8.2838 0.6449 0.7607 39 1 10.2406 3.5060 0.0836 40 1 10.3929 1.9684 -0.7999 41 1 10.0806 1.9607 0.9524 42 1 8.7118 2.5435 -2.3244 43 1 7.0719 2.9580 -1.7703 44 1 7.6743 5.2665 -4.5759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414166743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = -123.158782 kcal Electronic energy + Delta-G solvation = -27049.487744 eV Core-core repulsion = 22992.509233 eV Total energy + Delta-G solvation = -4056.978511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71108 -40.03586 -39.28722 -38.55533 -37.23969 -36.86035 -34.64161 -33.22853 -32.06073 -30.72524 -30.26487 -29.39228 -27.73864 -25.68546 -25.11131 -23.74278 -22.76386 -21.84643 -21.01086 -19.29216 -18.64152 -18.04258 -17.64203 -17.55561 -16.97067 -16.68409 -16.23800 -16.18181 -16.05870 -15.72910 -15.63242 -15.44605 -15.03857 -14.94409 -14.41397 -14.23682 -14.05025 -13.93793 -13.44539 -13.14780 -13.03764 -13.00913 -12.96145 -12.75582 -12.68981 -12.63239 -12.56049 -12.34433 -12.17157 -11.98636 -11.68532 -11.56943 -11.37174 -10.96010 -10.67875 -10.62128 -10.27893 -9.27186 -8.99550 -8.22723 -6.32337 -0.46296 0.09808 1.10230 1.37364 1.37381 1.42260 1.49564 1.92564 2.38628 2.53590 3.05153 3.09585 3.21367 3.48212 3.61483 3.73172 3.81523 3.93374 3.94785 4.11743 4.18852 4.24984 4.27288 4.30309 4.52085 4.53778 4.59554 4.61487 4.66611 4.75187 4.79146 4.96354 4.99177 5.03019 5.07058 5.15475 5.26040 5.28456 5.38267 5.62190 6.03485 6.22962 6.30849 6.60788 6.65440 6.83065 6.98256 7.36959 8.88459 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.002330 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.375380 B =12012.582039 C =12903.773125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.379 3.621 3 O -0.490 6.490 4 C -0.221 4.221 5 C -0.013 4.013 6 C -0.096 4.096 7 Cl -0.057 7.057 8 C -0.029 4.029 9 C -0.213 4.213 10 C 0.166 3.834 11 O -0.301 6.301 12 C 0.029 3.971 13 C 0.122 3.878 14 H 0.059 0.941 15 O -0.557 6.557 16 C 0.034 3.966 17 N -0.547 5.547 18 C 0.043 3.957 19 C 0.208 3.792 20 C -0.525 4.525 21 H 0.062 0.938 22 C -0.002 4.002 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.262 1.262 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.382 0.618 37 H 0.039 0.961 38 H 0.111 0.889 39 H 0.053 0.947 40 H 0.011 0.989 41 H 0.087 0.913 42 H -0.036 1.036 43 H -0.001 1.001 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 -24.359 10.547 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.260 3.740 3 O -0.368 6.368 4 C -0.223 4.223 5 C -0.032 4.032 6 C -0.123 4.123 7 Cl -0.029 7.029 8 C -0.048 4.048 9 C -0.232 4.232 10 C 0.117 3.883 11 O -0.213 6.213 12 C -0.046 4.046 13 C 0.062 3.938 14 H 0.077 0.923 15 O -0.363 6.363 16 C -0.095 4.095 17 N -0.271 5.271 18 C -0.104 4.104 19 C 0.081 3.919 20 C -0.563 4.563 21 H 0.080 0.920 22 C -0.199 4.199 23 N -0.576 5.576 24 Si 0.794 3.206 25 H -0.187 1.187 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.139 0.861 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.194 0.806 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.230 0.770 37 H 0.057 0.943 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.106 0.894 42 H -0.018 1.018 43 H 0.017 0.983 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.449 -22.975 10.318 28.095 hybrid contribution 0.931 0.005 -0.900 1.295 sum -11.518 -22.970 9.418 27.368 Atomic orbital electron populations 1.22289 0.90089 1.05738 1.06734 1.22995 0.93583 0.86797 0.70662 1.90707 1.73252 1.35466 1.37333 1.20122 0.90895 0.96271 1.14971 1.21365 1.01778 0.87862 0.92179 1.20758 0.92868 0.87723 1.10976 1.98382 1.76573 1.30664 1.97241 1.21375 0.92055 0.99235 0.92107 1.21478 1.02102 0.90379 1.09243 1.19872 0.91720 0.85943 0.90732 1.86385 1.20696 1.28118 1.86071 1.23778 0.77856 0.98682 1.04334 1.21701 0.93429 0.90781 0.87927 0.92326 1.86730 1.79742 1.54357 1.15481 1.22666 0.93749 0.90743 1.02346 1.61867 1.13753 1.19374 1.32104 1.22212 0.86807 1.01632 0.99796 1.19411 0.94044 0.94236 0.84184 1.21454 1.41567 0.95364 0.97901 0.92022 1.25953 0.95180 1.03794 0.95023 1.70079 1.46040 1.38295 1.03217 0.85435 0.79178 0.78770 0.77250 1.18705 1.20682 1.19742 0.86073 0.90358 0.86408 0.80627 0.81567 0.81995 0.89466 0.87662 0.77001 0.94281 0.87059 0.92792 0.97009 0.89431 1.01806 0.98272 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 8.93 71.24 0.64 -2.12 16 2 C 0.38 9.86 7.22 27.92 0.20 10.06 16 3 O -0.49 -18.91 15.89 17.87 0.28 -18.63 16 4 C -0.22 -4.96 5.88 -20.08 -0.12 -5.08 16 5 C -0.01 -0.20 9.24 22.59 0.21 0.01 16 6 C -0.10 -1.35 6.31 22.28 0.14 -1.21 16 7 Cl -0.06 -0.69 28.94 -2.72 -0.08 -0.77 16 8 C -0.03 -0.39 9.81 22.34 0.22 -0.17 16 9 C -0.21 -3.64 9.03 22.33 0.20 -3.44 16 10 C 0.17 4.13 6.71 22.91 0.15 4.28 16 11 O -0.30 -9.67 8.17 -64.55 -0.53 -10.20 16 12 C 0.03 0.73 4.37 71.98 0.31 1.05 16 13 C 0.12 4.29 3.30 30.59 0.10 4.39 16 14 H 0.06 2.74 6.46 -2.39 -0.02 2.72 16 15 O -0.56 -20.60 13.25 -144.34 -1.91 -22.51 16 16 C 0.03 1.10 4.61 86.30 0.40 1.50 16 17 N -0.55 -23.88 4.66 -927.06 -4.32 -28.20 16 18 C 0.04 1.62 9.32 127.69 1.19 2.81 16 19 C 0.21 11.54 4.57 85.56 0.39 11.93 16 20 C -0.52 -31.29 8.58 25.60 0.22 -31.08 16 21 H 0.06 3.61 7.10 -2.92 -0.02 3.58 16 22 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 23 N -0.94 -58.87 13.29 21.45 0.28 -58.58 16 24 Si 0.97 46.42 29.54 68.60 2.03 48.45 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 27 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 28 H 0.12 0.99 8.09 -2.38 -0.02 0.97 16 29 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 30 H 0.12 1.06 8.09 -2.39 -0.02 1.04 16 31 H 0.18 1.41 7.05 -2.91 -0.02 1.39 16 32 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.16 2.04 6.30 -2.91 -0.02 2.02 16 34 H 0.09 1.92 7.65 -2.39 -0.02 1.90 16 35 H 0.11 1.81 7.67 -2.39 -0.02 1.79 16 36 H 0.38 9.69 9.05 -74.06 -0.67 9.02 16 37 H 0.04 1.26 8.05 -2.39 -0.02 1.24 16 38 H 0.11 2.62 7.82 -2.39 -0.02 2.60 16 39 H 0.05 2.20 7.02 -2.39 -0.02 2.18 16 40 H 0.01 0.43 8.07 -2.39 -0.02 0.41 16 41 H 0.09 2.47 7.88 -2.39 -0.02 2.45 16 42 H -0.04 -2.11 8.07 -2.39 -0.02 -2.13 16 43 H 0.00 -0.05 6.34 -2.39 -0.02 -0.06 16 44 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -85.09 383.56 0.84 -84.25 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.36 Total: 12.89 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 4.72 Total: -6.70 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -4.03 Total: -86.78 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -2.16 Total: -51.34 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -85.09 0.84 -84.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414166743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.907 kcal (2) G-P(sol) polarization free energy of solvation -85.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds