Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21302 * 119.99991 * 2 1 4 4 C 1.46711 * 119.99600 * 179.97438 * 2 1 3 5 5 C 1.40067 * 120.21044 * 0.02562 * 4 2 1 6 6 C 1.37604 * 119.88975 * 179.97438 * 5 4 2 7 7 C 1.38790 * 120.32794 * 359.97438 * 6 5 4 8 8 Cl 1.73604 * 119.78494 * 179.97438 * 7 6 5 9 9 C 1.38208 * 120.42651 * 359.74221 * 7 6 5 10 10 C 1.38614 * 120.09825 * 0.51768 * 9 7 6 11 11 O 1.35594 * 120.16712 * 179.76570 * 10 9 7 12 12 C 1.42906 * 117.00014 * 359.72369 * 11 10 9 13 13 C 1.52998 * 109.47322 * 180.02562 * 12 11 10 14 14 H 1.08992 * 109.47135 * 54.99494 * 13 12 11 15 15 O 1.42897 * 109.46674 * 294.99501 * 13 12 11 16 16 C 1.53004 * 109.46799 * 174.99810 * 13 12 11 17 17 N 1.46898 * 109.46619 * 184.99872 * 16 13 12 18 18 C 1.46901 * 111.00443 * 66.04574 * 17 16 13 19 19 C 1.46906 * 110.99820 * 189.99887 * 17 16 13 20 20 C 1.50696 * 109.47351 * 169.99890 * 19 17 16 21 21 H 1.08007 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.37878 * 120.00506 * 180.02562 * 20 19 17 23 23 N 1.31515 * 119.99253 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00341 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47238 * 59.99702 * 24 22 20 26 26 H 1.48503 * 109.47230 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47102 * 299.99648 * 24 22 20 28 28 H 1.08995 * 109.47169 * 270.00602 * 1 2 3 29 29 H 1.09003 * 109.46663 * 30.00308 * 1 2 3 30 30 H 1.08996 * 109.46841 * 149.99801 * 1 2 3 31 31 H 1.07994 * 120.05203 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.83820 * 180.02562 * 6 5 4 33 33 H 1.08002 * 119.95636 * 180.27619 * 9 7 6 34 34 H 1.08994 * 109.46880 * 59.99298 * 12 11 10 35 35 H 1.09004 * 109.46141 * 300.00091 * 12 11 10 36 36 H 0.96701 * 114.00549 * 300.00026 * 15 13 12 37 37 H 1.08994 * 109.47270 * 64.99737 * 16 13 12 38 38 H 1.08999 * 109.47017 * 304.99614 * 16 13 12 39 39 H 1.09002 * 109.47401 * 183.95136 * 18 17 16 40 40 H 1.09001 * 109.46874 * 63.95149 * 18 17 16 41 41 H 1.09004 * 109.46970 * 303.95282 * 18 17 16 42 42 H 1.08997 * 109.46995 * 289.99871 * 19 17 16 43 43 H 1.09001 * 109.46848 * 49.99877 * 19 17 16 44 44 H 0.96999 * 119.99606 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2405 -1.2706 0.0006 5 6 1.5446 -2.4861 0.0006 6 6 2.2392 -3.6740 0.0006 7 6 3.6271 -3.6743 0.0000 8 17 4.4891 -5.1811 0.0007 9 6 4.3272 -2.4827 -0.0059 10 6 3.6455 -1.2758 -0.0005 11 8 4.3310 -0.1059 -0.0015 12 6 5.7576 -0.1899 -0.0021 13 6 6.3516 1.2200 -0.0025 14 1 5.9497 1.7838 0.8393 15 8 6.0113 1.8798 -1.2235 16 6 7.8739 1.1321 0.1226 17 7 8.4342 2.4847 0.2426 18 6 8.0162 3.1182 1.5003 19 6 9.8985 2.4602 0.1268 20 6 10.4167 3.8702 0.0077 21 1 9.7273 4.7015 0.0174 22 6 11.7709 4.0991 -0.1138 23 7 12.6104 3.0868 -0.1252 24 14 12.4133 5.8470 -0.2608 25 1 12.0257 6.6200 0.9465 26 1 13.8935 5.8222 -0.3779 27 1 11.8315 6.4884 -1.4672 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 0.4646 -2.4910 0.0006 32 1 1.7017 -4.6108 0.0002 33 1 5.4072 -2.4918 -0.0108 34 1 6.0896 -0.7248 -0.8918 35 1 6.0903 -0.7238 0.8882 36 1 6.3374 1.4325 -2.0165 37 1 8.2838 0.6462 -0.7627 38 1 8.1328 0.5518 1.0082 39 1 8.3865 4.1429 1.5318 40 1 8.4240 2.5585 2.3421 41 1 6.9278 3.1232 1.5604 42 1 10.3251 1.9899 1.0127 43 1 10.1834 1.8923 -0.7589 44 1 13.5631 3.2477 -0.2110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416404657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -121.432158 kcal Electronic energy + Delta-G solvation = -26848.250563 eV Core-core repulsion = 22791.346924 eV Total energy + Delta-G solvation = -4056.903639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71192 -40.03066 -39.30093 -38.56313 -37.41101 -36.92506 -34.65708 -32.99406 -32.13053 -31.00609 -30.14515 -29.18234 -27.91428 -25.98178 -24.90887 -23.59737 -22.76385 -21.94517 -20.93840 -19.41154 -18.57594 -18.01476 -17.72528 -17.38060 -16.91675 -16.77652 -16.40887 -16.28399 -16.04098 -15.75366 -15.66036 -15.38404 -15.09268 -14.93359 -14.46664 -14.27908 -14.10573 -13.82393 -13.37907 -13.28376 -13.04340 -12.97713 -12.87323 -12.73379 -12.68879 -12.59899 -12.57810 -12.45563 -12.04878 -12.04448 -11.85741 -11.69526 -11.46231 -10.94038 -10.64235 -10.63008 -10.06941 -9.41913 -9.02618 -8.22727 -6.32303 -0.54460 0.20926 0.92586 1.36794 1.39797 1.42940 1.50908 1.86972 2.39382 2.56532 3.09488 3.10980 3.17967 3.46059 3.60243 3.73772 3.78360 3.88051 3.96939 4.04334 4.16961 4.21193 4.23610 4.37137 4.43627 4.48324 4.59417 4.62223 4.66148 4.73809 4.92175 4.93883 5.03800 5.04672 5.05680 5.13155 5.26593 5.30711 5.47498 5.62432 6.01342 6.17004 6.26051 6.57477 6.69663 6.82303 6.85844 7.37172 8.88058 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.002249 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.103610 B =12444.842405 C =14021.782516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.381 3.619 3 O -0.491 6.491 4 C -0.226 4.226 5 C -0.004 4.004 6 C -0.161 4.161 7 C 0.029 3.971 8 Cl -0.057 7.057 9 C -0.229 4.229 10 C 0.173 3.827 11 O -0.292 6.292 12 C 0.025 3.975 13 C 0.128 3.872 14 H 0.093 0.907 15 O -0.557 6.557 16 C 0.030 3.970 17 N -0.542 5.542 18 C 0.039 3.961 19 C 0.209 3.791 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.933 5.933 24 Si 0.968 3.032 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.270 1.270 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.193 0.807 32 H 0.171 0.829 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.382 0.618 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.015 0.985 41 H 0.071 0.929 42 H -0.035 1.035 43 H 0.008 0.992 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.350 -19.325 0.886 33.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.262 3.738 3 O -0.369 6.369 4 C -0.228 4.228 5 C -0.022 4.022 6 C -0.179 4.179 7 C 0.002 3.998 8 Cl -0.027 7.027 9 C -0.249 4.249 10 C 0.125 3.875 11 O -0.204 6.204 12 C -0.050 4.050 13 C 0.068 3.932 14 H 0.110 0.890 15 O -0.363 6.363 16 C -0.098 4.098 17 N -0.266 5.266 18 C -0.109 4.109 19 C 0.083 3.917 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.195 4.195 23 N -0.574 5.574 24 Si 0.793 3.207 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.195 1.195 28 H 0.134 0.866 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.210 0.790 32 H 0.188 0.812 33 H 0.164 0.836 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.230 0.770 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.090 0.910 42 H -0.017 1.017 43 H 0.026 0.974 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.288 -18.040 0.893 32.725 hybrid contribution 2.087 -0.390 0.284 2.142 sum -25.202 -18.430 1.177 31.244 Atomic orbital electron populations 1.22271 0.89890 1.06322 1.06268 1.22984 0.93589 0.86712 0.70545 1.90674 1.73205 1.35521 1.37468 1.20461 0.90384 0.97583 1.14344 1.21723 1.02199 0.88064 0.90233 1.21313 0.90945 1.00848 1.04829 1.21152 0.93483 0.86632 0.98534 1.98409 1.77204 1.30787 1.96335 1.21196 1.01647 0.90469 1.11542 1.19533 0.91797 0.84879 0.91273 1.86356 1.20162 1.27503 1.86348 1.23747 0.78187 0.99226 1.03869 1.21732 0.91893 0.90783 0.88758 0.88954 1.86641 1.79521 1.54469 1.15662 1.22671 0.94369 0.91018 1.01788 1.61883 1.11332 1.18095 1.35328 1.22240 0.99783 0.99730 0.89176 1.19403 0.82256 0.96359 0.93684 1.21431 0.92069 0.93220 1.49715 0.92279 1.25882 0.97068 1.01731 0.94825 1.70063 1.03189 1.32660 1.51444 0.85455 0.76970 0.79249 0.79068 1.19339 1.20575 1.19485 0.86629 0.89816 0.86283 0.79000 0.81172 0.83579 0.89468 0.89364 0.77017 0.90161 0.93821 0.92450 0.96640 0.91047 1.01686 0.97374 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 9.75 71.24 0.69 -1.00 16 2 C 0.38 7.86 7.21 27.90 0.20 8.06 16 3 O -0.49 -15.91 15.91 17.86 0.28 -15.63 16 4 C -0.23 -4.13 5.88 -20.07 -0.12 -4.25 16 5 C 0.00 -0.04 9.35 22.56 0.21 0.17 16 6 C -0.16 -1.58 9.80 22.25 0.22 -1.36 16 7 C 0.03 0.44 6.32 22.39 0.14 0.58 16 8 Cl -0.06 -0.81 28.94 -2.72 -0.08 -0.89 16 9 C -0.23 -4.29 8.80 22.35 0.20 -4.09 16 10 C 0.17 3.96 6.71 22.91 0.15 4.12 16 11 O -0.29 -8.33 8.17 -64.31 -0.53 -8.86 16 12 C 0.03 0.61 4.37 71.98 0.31 0.93 16 13 C 0.13 3.95 3.21 30.60 0.10 4.05 16 14 H 0.09 3.12 6.26 -2.39 -0.01 3.10 16 15 O -0.56 -19.20 13.25 -144.34 -1.91 -21.12 16 16 C 0.03 1.05 4.60 86.30 0.40 1.44 16 17 N -0.54 -24.20 4.70 -927.04 -4.36 -28.56 16 18 C 0.04 1.60 9.17 127.69 1.17 2.77 16 19 C 0.21 11.29 4.72 85.55 0.40 11.70 16 20 C -0.53 -30.62 8.52 25.60 0.22 -30.40 16 21 H 0.06 3.43 7.10 -2.91 -0.02 3.40 16 22 C 0.00 0.18 5.46 84.65 0.46 0.64 16 23 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 24 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 28 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.12 0.17 6.46 -2.39 -0.02 0.15 16 31 H 0.19 -0.05 6.35 -2.91 -0.02 -0.07 16 32 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.15 2.55 6.30 -2.91 -0.02 2.53 16 34 H 0.09 1.76 7.65 -2.39 -0.02 1.74 16 35 H 0.09 1.82 7.67 -2.38 -0.02 1.80 16 36 H 0.38 10.35 9.05 -74.06 -0.67 9.68 16 37 H 0.08 2.65 7.93 -2.39 -0.02 2.63 16 38 H 0.04 1.41 8.12 -2.39 -0.02 1.40 16 39 H 0.06 2.53 6.86 -2.39 -0.02 2.52 16 40 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 2.57 6.21 -2.38 -0.01 2.56 16 42 H -0.03 -2.00 8.12 -2.39 -0.02 -2.02 16 43 H 0.01 0.47 7.93 -2.39 -0.02 0.45 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.58 381.79 0.85 -78.73 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.37 Total: 11.97 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 4.76 Total: -6.65 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -4.07 Total: -84.81 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -2.15 Total: -45.60 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -79.58 0.85 -78.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416404657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.700 kcal (2) G-P(sol) polarization free energy of solvation -79.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds