Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21309 * 119.99860 * 2 1 4 4 C 1.46705 * 119.99988 * 180.02562 * 2 1 3 5 5 C 1.40059 * 120.21212 * 0.02562 * 4 2 1 6 6 C 1.37608 * 119.89607 * 179.97438 * 5 4 2 7 7 C 1.38784 * 120.32661 * 359.97438 * 6 5 4 8 8 Cl 1.73593 * 119.78937 * 179.97438 * 7 6 5 9 9 C 1.38220 * 120.42511 * 359.74980 * 7 6 5 10 10 C 1.38618 * 120.09589 * 0.50637 * 9 7 6 11 11 O 1.35596 * 120.16307 * 179.76932 * 10 9 7 12 12 C 1.42894 * 116.99874 * 359.72565 * 11 10 9 13 13 C 1.53002 * 109.47240 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47070 * 305.00002 * 13 12 11 15 15 O 1.42903 * 109.46923 * 65.00166 * 13 12 11 16 16 C 1.53000 * 109.47233 * 184.99627 * 13 12 11 17 17 N 1.46905 * 109.47123 * 180.02562 * 16 13 12 18 18 C 1.46898 * 110.99713 * 293.95674 * 17 16 13 19 19 C 1.46891 * 110.99898 * 170.00473 * 17 16 13 20 20 C 1.50706 * 109.47049 * 190.00167 * 19 17 16 21 21 H 1.07995 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31511 * 120.00404 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47100 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47054 * 119.99878 * 24 22 20 27 27 H 1.48500 * 109.47134 * 240.00287 * 24 22 20 28 28 H 1.08998 * 109.46810 * 240.00527 * 1 2 3 29 29 H 1.08999 * 109.47201 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47378 * 120.00231 * 1 2 3 31 31 H 1.08003 * 120.05279 * 0.02562 * 5 4 2 32 32 H 1.08006 * 119.83714 * 180.02562 * 6 5 4 33 33 H 1.07994 * 119.95208 * 180.27583 * 9 7 6 34 34 H 1.09008 * 109.47321 * 59.99785 * 12 11 10 35 35 H 1.08997 * 109.47221 * 299.99715 * 12 11 10 36 36 H 0.96700 * 114.00234 * 59.99815 * 15 13 12 37 37 H 1.08992 * 109.47399 * 300.00166 * 16 13 12 38 38 H 1.09004 * 109.46724 * 60.00652 * 16 13 12 39 39 H 1.09002 * 109.47298 * 60.00428 * 18 17 16 40 40 H 1.09011 * 109.46893 * 179.97438 * 18 17 16 41 41 H 1.08994 * 109.47518 * 299.99556 * 18 17 16 42 42 H 1.09008 * 109.47131 * 309.99933 * 19 17 16 43 43 H 1.08997 * 109.47884 * 70.00206 * 19 17 16 44 44 H 0.96997 * 120.00581 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2406 -1.2705 -0.0006 5 6 1.5448 -2.4860 -0.0017 6 6 2.2394 -3.6739 -0.0027 7 6 3.6272 -3.6742 -0.0033 8 17 4.4894 -5.1809 -0.0039 9 6 4.3274 -2.4825 -0.0079 10 6 3.6455 -1.2756 -0.0015 11 8 4.3311 -0.1057 -0.0014 12 6 5.7575 -0.1898 -0.0020 13 6 6.3515 1.2203 -0.0023 14 1 5.9490 1.7838 -0.8441 15 8 6.0122 1.8804 1.2188 16 6 7.8738 1.1324 -0.1286 17 7 8.4441 2.4862 -0.1283 18 6 8.0362 3.2295 -1.3279 19 6 9.9075 2.4409 -0.0094 20 6 10.4350 3.8315 0.2339 21 1 9.7515 4.6655 0.2937 22 6 11.7902 4.0389 0.3801 23 7 12.6225 3.0233 0.3078 24 14 12.4442 5.7627 0.6809 25 1 11.3114 6.7222 0.7188 26 1 13.1674 5.7985 1.9774 27 1 13.3735 6.1378 -0.4149 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.4647 -2.4910 -0.0025 32 1 1.7018 -4.6107 -0.0040 33 1 5.4073 -2.4916 -0.0128 34 1 6.0897 -0.7238 -0.8923 35 1 6.0904 -0.7243 0.8877 36 1 6.3389 1.4333 2.0116 37 1 8.2762 0.5689 0.7131 38 1 8.1326 0.6289 -1.0601 39 1 6.9493 3.3081 -1.3546 40 1 8.4718 4.2284 -1.3021 41 1 8.3844 2.7038 -2.2170 42 1 10.1844 1.7961 0.8248 43 1 10.3350 2.0463 -0.9311 44 1 13.5760 3.1692 0.4103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416404660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -98.613481 kcal Electronic energy + Delta-G solvation = -26850.132416 eV Core-core repulsion = 22794.218269 eV Total energy + Delta-G solvation = -4055.914147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93485 -39.04352 -38.33587 -37.45581 -36.67737 -35.38562 -32.54624 -32.28315 -31.06726 -30.15308 -29.43871 -27.29891 -26.47589 -24.52533 -24.02605 -22.57177 -21.51156 -20.36118 -20.14268 -18.57358 -17.12949 -16.72323 -16.64589 -16.39717 -15.76063 -15.67034 -15.34546 -14.98007 -14.95369 -14.70979 -14.42270 -14.21828 -13.77426 -13.65920 -13.47983 -13.31323 -12.85740 -12.61064 -12.45553 -12.35309 -12.09185 -11.96577 -11.88880 -11.44779 -11.40725 -11.16675 -11.09740 -10.90127 -10.77698 -10.66691 -10.32359 -10.02889 -9.85477 -9.70382 -9.41849 -9.16111 -8.69386 -8.44923 -7.24920 -6.03837 -4.04648 0.13807 0.85112 1.56350 2.08076 2.74367 3.22182 3.31596 3.38957 3.45043 3.74936 4.16974 4.39249 4.48953 4.51566 4.53330 4.63659 4.76450 4.86717 4.90520 5.01334 5.06444 5.07404 5.11261 5.29527 5.33594 5.37792 5.43804 5.53983 5.60928 5.65796 5.83588 5.95214 6.03890 6.14935 6.24075 6.33261 6.77319 6.98067 7.23323 7.29342 7.42145 7.78770 7.95845 8.07242 8.16742 8.52226 9.03753 9.59768 11.07237 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.002253 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.703343 B =12424.775497 C =14010.525792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.384 3.616 3 O -0.425 6.425 4 C -0.207 4.207 5 C -0.023 4.023 6 C -0.169 4.169 7 C 0.036 3.964 8 Cl -0.059 7.059 9 C -0.220 4.220 10 C 0.203 3.797 11 O -0.264 6.264 12 C 0.017 3.983 13 C 0.119 3.881 14 H 0.106 0.894 15 O -0.532 6.532 16 C 0.028 3.972 17 N -0.527 5.527 18 C 0.034 3.966 19 C 0.192 3.808 20 C -0.505 4.505 21 H 0.065 0.935 22 C 0.054 3.946 23 N -0.901 5.901 24 Si 0.898 3.102 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.285 1.285 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.369 0.631 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.009 0.991 42 H 0.029 0.971 43 H -0.010 1.010 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.009 -17.578 -1.478 30.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.260 3.740 3 O -0.298 6.298 4 C -0.208 4.208 5 C -0.042 4.042 6 C -0.188 4.188 7 C 0.009 3.991 8 Cl -0.029 7.029 9 C -0.240 4.240 10 C 0.153 3.847 11 O -0.174 6.174 12 C -0.059 4.059 13 C 0.059 3.941 14 H 0.124 0.876 15 O -0.336 6.336 16 C -0.102 4.102 17 N -0.252 5.252 18 C -0.114 4.114 19 C 0.068 3.932 20 C -0.543 4.543 21 H 0.083 0.917 22 C -0.147 4.147 23 N -0.540 5.540 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.211 1.211 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.047 0.953 43 H 0.008 0.992 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.923 -16.280 -1.468 29.805 hybrid contribution 1.472 -0.694 -0.243 1.645 sum -23.451 -16.974 -1.711 29.000 Atomic orbital electron populations 1.22237 0.93788 1.05270 1.04148 1.22143 0.91403 0.87385 0.73078 1.90696 1.71671 1.33497 1.33944 1.20129 0.90770 0.96370 1.13569 1.21223 1.00235 0.89833 0.92894 1.20884 0.91681 0.99428 1.06792 1.20949 0.92532 0.87008 0.98642 1.98405 1.76988 1.31177 1.96370 1.21185 1.01446 0.90415 1.10924 1.19201 0.90914 0.85182 0.89394 1.86413 1.19883 1.25710 1.85350 1.23957 0.78175 1.01496 1.02295 1.21917 0.93428 0.89031 0.89762 0.87579 1.86683 1.79085 1.53234 1.14557 1.22625 0.93141 0.93660 1.00764 1.61992 1.13877 1.11245 1.38050 1.22284 0.98917 1.00131 0.90075 1.19766 0.79640 0.98070 0.95765 1.21203 0.91605 0.93360 1.48148 0.91656 1.24995 0.96929 0.97244 0.95546 1.69962 1.02932 1.30289 1.50862 0.86428 0.78861 0.84379 0.77705 1.19571 1.20994 1.21139 0.89081 0.89594 0.89106 0.83484 0.84191 0.83645 0.90853 0.91144 0.78482 0.90831 0.94978 0.93278 0.90473 0.97209 0.95303 0.99190 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 8.93 36.01 0.32 -0.82 16 2 C 0.38 4.08 7.21 -30.89 -0.22 3.86 16 3 O -0.42 -6.61 15.89 -16.39 -0.26 -6.87 16 4 C -0.21 -2.03 5.88 -104.95 -0.62 -2.65 16 5 C -0.02 -0.15 9.46 -39.13 -0.37 -0.52 16 6 C -0.17 -1.14 9.80 -39.61 -0.39 -1.53 16 7 C 0.04 0.31 6.32 -39.39 -0.25 0.06 16 8 Cl -0.06 -0.48 28.94 -51.86 -1.50 -1.98 16 9 C -0.22 -2.15 8.80 -39.45 -0.35 -2.50 16 10 C 0.20 2.34 6.71 -38.59 -0.26 2.08 16 11 O -0.26 -3.65 8.17 -44.34 -0.36 -4.01 16 12 C 0.02 0.20 4.37 37.16 0.16 0.36 16 13 C 0.12 1.80 3.12 -26.73 -0.08 1.71 16 14 H 0.11 1.73 6.55 -51.93 -0.34 1.39 16 15 O -0.53 -8.98 13.17 -40.08 -0.53 -9.51 16 16 C 0.03 0.47 4.62 -3.82 -0.02 0.45 16 17 N -0.53 -11.46 4.62 -244.37 -1.13 -12.59 16 18 C 0.03 0.69 9.14 60.06 0.55 1.24 16 19 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 20 C -0.50 -14.32 8.46 -34.44 -0.29 -14.61 16 21 H 0.07 1.86 7.12 -52.49 -0.37 1.49 16 22 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 23 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 24 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 28 H 0.09 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.09 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.15 0.42 7.05 -52.48 -0.37 0.05 16 32 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 33 H 0.15 1.30 6.30 -52.49 -0.33 0.97 16 34 H 0.07 0.76 7.65 -51.92 -0.40 0.36 16 35 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 36 H 0.37 4.97 9.05 45.56 0.41 5.38 16 37 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 38 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.05 0.89 6.47 -51.93 -0.34 0.55 16 40 H 0.08 1.67 6.76 -51.92 -0.35 1.32 16 41 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.03 0.79 7.93 -51.92 -0.41 0.38 16 43 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -34.96 383.46 -9.61 -44.57 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.39 Total: 0.27 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.93 Total: -6.43 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.39 Total: -38.67 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.15 Total: -20.39 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.96 -9.61 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416404660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.042 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds