Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21309 * 119.99860 * 2 1 4 4 C 1.46705 * 119.99988 * 180.02562 * 2 1 3 5 5 C 1.40059 * 120.21212 * 0.02562 * 4 2 1 6 6 C 1.37608 * 119.89607 * 179.97438 * 5 4 2 7 7 C 1.38784 * 120.32661 * 359.97438 * 6 5 4 8 8 Cl 1.73593 * 119.78937 * 179.97438 * 7 6 5 9 9 C 1.38220 * 120.42511 * 359.74980 * 7 6 5 10 10 C 1.38618 * 120.09589 * 0.50637 * 9 7 6 11 11 O 1.35596 * 120.16307 * 179.76932 * 10 9 7 12 12 C 1.42894 * 116.99874 * 359.72565 * 11 10 9 13 13 C 1.53002 * 109.47240 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47070 * 305.00002 * 13 12 11 15 15 O 1.42903 * 109.46923 * 65.00166 * 13 12 11 16 16 C 1.53000 * 109.47233 * 184.99627 * 13 12 11 17 17 N 1.46905 * 109.47123 * 180.02562 * 16 13 12 18 18 C 1.46898 * 110.99713 * 293.95674 * 17 16 13 19 19 C 1.46891 * 110.99898 * 170.00473 * 17 16 13 20 20 C 1.50706 * 109.47049 * 190.00167 * 19 17 16 21 21 H 1.07995 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31511 * 120.00404 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47100 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47054 * 119.99878 * 24 22 20 27 27 H 1.48500 * 109.47134 * 240.00287 * 24 22 20 28 28 H 1.08998 * 109.46810 * 240.00527 * 1 2 3 29 29 H 1.08999 * 109.47201 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47378 * 120.00231 * 1 2 3 31 31 H 1.08003 * 120.05279 * 0.02562 * 5 4 2 32 32 H 1.08006 * 119.83714 * 180.02562 * 6 5 4 33 33 H 1.07994 * 119.95208 * 180.27583 * 9 7 6 34 34 H 1.09008 * 109.47321 * 59.99785 * 12 11 10 35 35 H 1.08997 * 109.47221 * 299.99715 * 12 11 10 36 36 H 0.96700 * 114.00234 * 59.99815 * 15 13 12 37 37 H 1.08992 * 109.47399 * 300.00166 * 16 13 12 38 38 H 1.09004 * 109.46724 * 60.00652 * 16 13 12 39 39 H 1.09002 * 109.47298 * 60.00428 * 18 17 16 40 40 H 1.09011 * 109.46893 * 179.97438 * 18 17 16 41 41 H 1.08994 * 109.47518 * 299.99556 * 18 17 16 42 42 H 1.09008 * 109.47131 * 309.99933 * 19 17 16 43 43 H 1.08997 * 109.47884 * 70.00206 * 19 17 16 44 44 H 0.96997 * 120.00581 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2406 -1.2705 -0.0006 5 6 1.5448 -2.4860 -0.0017 6 6 2.2394 -3.6739 -0.0027 7 6 3.6272 -3.6742 -0.0033 8 17 4.4894 -5.1809 -0.0039 9 6 4.3274 -2.4825 -0.0079 10 6 3.6455 -1.2756 -0.0015 11 8 4.3311 -0.1057 -0.0014 12 6 5.7575 -0.1898 -0.0020 13 6 6.3515 1.2203 -0.0023 14 1 5.9490 1.7838 -0.8441 15 8 6.0122 1.8804 1.2188 16 6 7.8738 1.1324 -0.1286 17 7 8.4441 2.4862 -0.1283 18 6 8.0362 3.2295 -1.3279 19 6 9.9075 2.4409 -0.0094 20 6 10.4350 3.8315 0.2339 21 1 9.7515 4.6655 0.2937 22 6 11.7902 4.0389 0.3801 23 7 12.6225 3.0233 0.3078 24 14 12.4442 5.7627 0.6809 25 1 11.3114 6.7222 0.7188 26 1 13.1674 5.7985 1.9774 27 1 13.3735 6.1378 -0.4149 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.4647 -2.4910 -0.0025 32 1 1.7018 -4.6107 -0.0040 33 1 5.4073 -2.4916 -0.0128 34 1 6.0897 -0.7238 -0.8923 35 1 6.0904 -0.7243 0.8877 36 1 6.3389 1.4333 2.0116 37 1 8.2762 0.5689 0.7131 38 1 8.1326 0.6289 -1.0601 39 1 6.9493 3.3081 -1.3546 40 1 8.4718 4.2284 -1.3021 41 1 8.3844 2.7038 -2.2170 42 1 10.1844 1.7961 0.8248 43 1 10.3350 2.0463 -0.9311 44 1 13.5760 3.1692 0.4103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416404660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = -122.871575 kcal Electronic energy + Delta-G solvation = -26851.184326 eV Core-core repulsion = 22794.218269 eV Total energy + Delta-G solvation = -4056.966056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70450 -40.02106 -39.29612 -38.56028 -37.40601 -36.90229 -34.65082 -32.96850 -32.12817 -31.00789 -30.14903 -29.18802 -27.89625 -25.98206 -24.89715 -23.59583 -22.75413 -21.93194 -20.94143 -19.39010 -18.57764 -18.00687 -17.71417 -17.38544 -16.90588 -16.77361 -16.40935 -16.29402 -16.00543 -15.74080 -15.61930 -15.36741 -15.09786 -14.93139 -14.45173 -14.27523 -14.09903 -13.82785 -13.41114 -13.29595 -13.01670 -12.95508 -12.88001 -12.77318 -12.69012 -12.59752 -12.58648 -12.42342 -12.05752 -12.05245 -11.85542 -11.69491 -11.43079 -10.92681 -10.64536 -10.64147 -10.06475 -9.41611 -9.02360 -8.23001 -6.32326 -0.53908 0.21336 0.92925 1.37355 1.39306 1.40144 1.54051 1.87381 2.39310 2.57070 3.09360 3.11478 3.18187 3.47213 3.61592 3.73639 3.79014 3.88999 3.97323 4.04890 4.18355 4.21822 4.23154 4.37398 4.46407 4.50714 4.58455 4.62946 4.66594 4.74560 4.91920 4.93116 5.03639 5.05139 5.06200 5.13930 5.26768 5.32379 5.47795 5.62898 6.01467 6.17403 6.26531 6.57544 6.70216 6.83006 6.86443 7.37275 8.88183 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.002253 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.703343 B =12424.775497 C =14010.525792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.381 3.619 3 O -0.491 6.491 4 C -0.226 4.226 5 C -0.003 4.003 6 C -0.161 4.161 7 C 0.029 3.971 8 Cl -0.057 7.057 9 C -0.229 4.229 10 C 0.173 3.827 11 O -0.292 6.292 12 C 0.025 3.975 13 C 0.129 3.871 14 H 0.092 0.908 15 O -0.556 6.556 16 C 0.030 3.970 17 N -0.540 5.540 18 C 0.039 3.961 19 C 0.208 3.792 20 C -0.523 4.523 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.933 5.933 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.193 0.807 32 H 0.171 0.829 33 H 0.146 0.854 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.381 0.619 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.009 0.991 43 H -0.035 1.035 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.410 -19.141 -1.409 33.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.261 3.739 3 O -0.369 6.369 4 C -0.228 4.228 5 C -0.021 4.021 6 C -0.180 4.180 7 C 0.002 3.998 8 Cl -0.028 7.028 9 C -0.249 4.249 10 C 0.125 3.875 11 O -0.204 6.204 12 C -0.050 4.050 13 C 0.069 3.931 14 H 0.110 0.890 15 O -0.362 6.362 16 C -0.099 4.099 17 N -0.265 5.265 18 C -0.109 4.109 19 C 0.082 3.918 20 C -0.562 4.562 21 H 0.077 0.923 22 C -0.195 4.195 23 N -0.574 5.574 24 Si 0.793 3.207 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.203 1.203 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.140 0.860 31 H 0.210 0.790 32 H 0.188 0.812 33 H 0.164 0.836 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.229 0.771 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.027 0.973 43 H -0.017 1.017 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.357 -17.885 -1.399 32.715 hybrid contribution 2.111 -0.360 -0.269 2.158 sum -25.247 -18.245 -1.668 31.194 Atomic orbital electron populations 1.22283 0.89822 1.05728 1.06891 1.22997 0.93619 0.86692 0.70575 1.90676 1.73277 1.35511 1.37415 1.20447 0.90359 0.97565 1.14380 1.21685 1.02183 0.88027 0.90185 1.21311 0.90936 1.00856 1.04854 1.21151 0.93487 0.86623 0.98555 1.98408 1.77204 1.30807 1.96336 1.21197 1.01637 0.90476 1.11563 1.19540 0.91815 0.84871 0.91287 1.86353 1.20158 1.27508 1.86354 1.23742 0.78189 0.99242 1.03844 1.21708 0.91860 0.90773 0.88760 0.89044 1.86634 1.79440 1.54443 1.15647 1.22673 0.94369 0.91270 1.01587 1.61874 1.11218 1.14252 1.39112 1.22230 0.99992 0.98921 0.89769 1.19414 0.82322 0.96504 0.93564 1.21483 0.92069 0.94186 1.48421 0.92287 1.25878 0.97149 1.01469 0.95047 1.70070 1.03378 1.32486 1.51460 0.85349 0.78225 0.79255 0.77891 1.19094 1.20216 1.20252 0.86097 0.90509 0.86029 0.79046 0.81192 0.83605 0.89341 0.89537 0.77050 0.90173 0.93871 0.91212 0.92435 0.96577 0.97322 1.01722 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 8.93 71.24 0.64 -1.04 16 2 C 0.38 7.83 7.21 27.90 0.20 8.03 16 3 O -0.49 -15.94 15.89 17.84 0.28 -15.65 16 4 C -0.23 -4.11 5.88 -20.07 -0.12 -4.22 16 5 C 0.00 -0.03 9.46 22.56 0.21 0.19 16 6 C -0.16 -1.58 9.80 22.25 0.22 -1.36 16 7 C 0.03 0.43 6.32 22.40 0.14 0.58 16 8 Cl -0.06 -0.82 28.94 -2.72 -0.08 -0.90 16 9 C -0.23 -4.30 8.80 22.36 0.20 -4.10 16 10 C 0.17 3.96 6.71 22.91 0.15 4.11 16 11 O -0.29 -8.35 8.17 -64.33 -0.53 -8.87 16 12 C 0.03 0.62 4.37 71.98 0.31 0.93 16 13 C 0.13 3.98 3.12 30.60 0.10 4.07 16 14 H 0.09 3.07 6.55 -2.39 -0.02 3.05 16 15 O -0.56 -19.26 13.17 -144.34 -1.90 -21.16 16 16 C 0.03 1.03 4.62 86.30 0.40 1.43 16 17 N -0.54 -24.07 4.62 -927.04 -4.28 -28.36 16 18 C 0.04 1.61 9.14 127.69 1.17 2.78 16 19 C 0.21 11.22 4.72 85.56 0.40 11.62 16 20 C -0.52 -30.41 8.46 25.60 0.22 -30.19 16 21 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 22 C 0.00 0.15 5.46 84.66 0.46 0.61 16 23 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 24 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H 0.12 0.36 8.09 -2.39 -0.02 0.35 16 29 H 0.08 0.85 8.12 -2.39 -0.02 0.84 16 30 H 0.12 0.34 8.08 -2.39 -0.02 0.32 16 31 H 0.19 -0.07 7.05 -2.91 -0.02 -0.09 16 32 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 34 H 0.09 1.82 7.65 -2.38 -0.02 1.80 16 35 H 0.09 1.76 7.67 -2.39 -0.02 1.75 16 36 H 0.38 10.56 9.05 -74.06 -0.67 9.89 16 37 H 0.08 2.63 7.93 -2.39 -0.02 2.62 16 38 H 0.04 1.41 8.12 -2.39 -0.02 1.39 16 39 H 0.07 2.56 6.47 -2.39 -0.02 2.55 16 40 H 0.06 2.56 6.76 -2.38 -0.02 2.54 16 41 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 42 H 0.01 0.50 7.93 -2.38 -0.02 0.48 16 43 H -0.03 -2.02 8.12 -2.39 -0.02 -2.04 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -79.51 383.46 0.87 -78.64 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.36 Total: 11.79 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 4.70 Total: -6.58 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -4.00 Total: -84.53 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -2.14 Total: -45.68 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -79.51 0.87 -78.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416404660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.227 kcal (2) G-P(sol) polarization free energy of solvation -79.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds