Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47217 * 2 1 4 4 C 1.34232 * 116.99935 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99939 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00223 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.47207 * 180.02562 * 6 4 3 8 8 C 1.33443 * 122.71399 * 124.97939 * 7 6 4 9 9 S 1.76171 * 108.05704 * 179.74611 * 8 7 6 10 10 C 1.70964 * 90.34471 * 0.32678 * 9 8 7 11 11 N 1.38998 * 124.94835 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99929 * 359.69781 * 11 10 9 13 13 O 1.21289 * 119.99821 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00232 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.46613 * 40.00277 * 14 12 11 16 16 N 1.46906 * 109.46982 * 160.00064 * 14 12 11 17 17 C 1.52997 * 109.47466 * 280.00174 * 14 12 11 18 18 C 1.53000 * 109.47341 * 175.00164 * 17 14 12 19 19 C 1.50690 * 109.47247 * 180.02562 * 18 17 14 20 20 H 1.08003 * 120.00245 * 359.97438 * 19 18 17 21 21 C 1.37884 * 120.00333 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99643 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00220 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46827 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46876 * 120.00182 * 23 21 19 26 26 H 1.48496 * 109.47147 * 240.00370 * 23 21 19 27 27 N 1.29623 * 110.11081 * 359.66440 * 10 9 8 28 28 H 1.09009 * 109.46648 * 300.00054 * 1 2 3 29 29 H 1.09003 * 109.47226 * 59.99297 * 1 2 3 30 30 H 1.08993 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47120 * 240.00235 * 2 1 3 32 32 H 1.08998 * 109.47364 * 120.00253 * 2 1 3 33 33 H 1.09004 * 109.46678 * 60.00503 * 6 4 3 34 34 H 1.08996 * 109.47092 * 300.00259 * 6 4 3 35 35 H 1.07990 * 125.96816 * 359.97438 * 8 7 6 36 36 H 0.97001 * 120.00604 * 179.69432 * 11 10 9 37 37 H 1.00896 * 111.00309 * 60.00059 * 16 14 12 38 38 H 1.00902 * 110.99923 * 183.96223 * 16 14 12 39 39 H 1.09002 * 109.47196 * 294.99972 * 17 14 12 40 40 H 1.09004 * 109.46881 * 54.99487 * 17 14 12 41 41 H 1.09002 * 109.46818 * 300.00038 * 18 17 14 42 42 H 1.08994 * 109.47281 * 59.99487 * 18 17 14 43 43 H 0.96996 * 119.99918 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 -0.0012 7 6 5.4258 2.8584 -0.0023 8 6 6.1790 3.4632 -0.9229 9 16 7.8682 3.1249 -0.5547 10 6 7.3972 2.1928 0.7989 11 7 8.2722 1.5432 1.6617 12 6 9.6020 1.6183 1.4554 13 8 10.0351 2.2532 0.5171 14 6 10.5507 0.9145 2.3911 15 1 10.1405 -0.0590 2.6598 16 7 11.8485 0.7328 1.7272 17 6 10.7379 1.7556 3.6554 18 6 11.6007 0.9856 4.6571 19 6 11.7846 1.8138 5.9026 20 1 11.3317 2.7918 5.9725 21 6 12.5310 1.3231 6.9529 22 7 13.0829 0.1324 6.8676 23 14 12.7595 2.3501 8.4965 24 1 12.0432 3.6417 8.3421 25 1 12.2101 1.6164 9.6649 26 1 14.2063 2.6082 8.7096 27 7 6.1055 2.1854 0.9073 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5853 3.4697 0.8889 34 1 3.5846 3.4692 -0.8911 35 1 5.8165 4.0593 -1.7472 36 1 7.9258 1.0357 2.4124 37 1 12.2497 1.6216 1.4680 38 1 12.4821 0.2062 2.3098 39 1 11.2296 2.6938 3.3981 40 1 9.7648 1.9654 4.0996 41 1 11.1090 0.0475 4.9144 42 1 12.5737 0.7759 4.2129 43 1 13.6083 -0.2127 7.6063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424085792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -85.003881 kcal Electronic energy + Delta-G solvation = -26216.481448 eV Core-core repulsion = 22195.493916 eV Total energy + Delta-G solvation = -4020.987533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90184 -40.44441 -39.42196 -36.79340 -35.85082 -35.08419 -32.95388 -32.44648 -31.51246 -30.02531 -28.57880 -27.03360 -24.98172 -23.99960 -23.19056 -21.61360 -21.44078 -20.54039 -19.50803 -18.33430 -17.94220 -17.35011 -17.11625 -16.74448 -16.32687 -16.20685 -15.57007 -15.14452 -14.67938 -14.57976 -14.51846 -14.24255 -14.13832 -13.48919 -13.43229 -13.23558 -13.12570 -13.07458 -12.85485 -12.31461 -12.12288 -11.93150 -11.89130 -11.61283 -11.18071 -11.01451 -10.95227 -10.81411 -10.71541 -10.59817 -10.10588 -10.09974 -9.74244 -9.51452 -9.30049 -9.20491 -8.50702 -8.42612 -8.30475 -6.14159 -4.17559 0.68473 1.12190 1.78004 2.06078 2.12095 2.48045 2.56957 3.00550 3.23233 3.31507 3.35172 4.09930 4.34872 4.52925 4.57322 4.63792 4.68209 4.73617 4.92515 4.95913 5.00955 5.14380 5.22210 5.33387 5.35630 5.39786 5.41747 5.51646 5.58397 5.69243 6.08226 6.13560 6.22848 6.34678 6.73551 6.82670 7.32005 7.42790 7.52509 7.59326 7.71969 7.73116 7.81895 7.83544 8.23723 8.88317 9.47903 10.96709 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.002167 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.954954 B =12915.376321 C =14089.773096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.462 3.538 5 O -0.484 6.484 6 C -0.032 4.032 7 C 0.097 3.903 8 C -0.319 4.319 9 S 0.250 5.750 10 C 0.257 3.743 11 N -0.624 5.624 12 C 0.525 3.475 13 O -0.500 6.500 14 C 0.084 3.916 15 H 0.107 0.893 16 N -0.829 5.829 17 C -0.140 4.140 18 C 0.024 3.976 19 C -0.525 4.525 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 N -0.498 5.498 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.176 0.824 36 H 0.426 0.574 37 H 0.348 0.652 38 H 0.360 0.640 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.206 4.003 -16.627 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.369 6.369 6 C -0.072 4.072 7 C -0.037 4.037 8 C -0.460 4.460 9 S 0.501 5.499 10 C -0.111 4.111 11 N -0.274 5.274 12 C 0.312 3.688 13 O -0.373 6.373 14 C -0.031 4.031 15 H 0.125 0.875 16 N -0.362 5.362 17 C -0.180 4.180 18 C -0.013 4.013 19 C -0.563 4.563 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.209 1.209 27 N -0.221 5.221 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.193 0.807 36 H 0.265 0.735 37 H 0.161 0.839 38 H 0.177 0.823 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.104 3.518 -17.709 27.022 hybrid contribution -0.662 0.542 2.273 2.428 sum -20.767 4.060 -15.436 26.192 Atomic orbital electron populations 1.21807 0.92620 1.02999 1.03479 1.23005 0.95254 0.80173 1.02707 1.86473 1.24597 1.32497 1.84553 1.23404 0.80470 0.92604 0.73261 1.90729 1.60168 1.42720 1.43326 1.19795 0.88684 0.92033 1.06736 1.18904 0.95021 0.97555 0.92232 1.27191 0.99326 1.12330 1.07141 1.84987 1.01605 1.43048 1.20244 1.23399 0.90434 0.99918 0.97364 1.43058 1.05079 1.50190 1.29106 1.21548 0.81010 0.80393 0.85809 1.90577 1.75435 1.40695 1.30544 1.21435 0.90566 0.99873 0.91220 0.87542 1.58734 1.04698 1.25309 1.47497 1.22463 1.02203 0.99183 0.94155 1.19111 0.94167 0.95395 0.92595 1.21186 1.32174 1.02812 1.00161 0.92595 1.25017 0.95502 0.95058 0.98744 1.69951 1.33885 1.16962 1.32263 0.86513 0.77936 0.80397 0.83046 1.19744 1.20903 1.20909 1.66019 1.03323 1.23571 1.29167 0.91429 0.91521 0.90241 0.91323 0.91139 0.86082 0.86053 0.80710 0.73461 0.83871 0.82314 0.92227 0.92217 0.96118 0.96213 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.29 37.16 0.38 -0.41 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.50 10.22 -39.26 -0.40 -3.90 16 4 C 0.46 5.20 7.92 36.01 0.29 5.49 16 5 O -0.48 -7.33 15.20 -18.75 -0.28 -7.62 16 6 C -0.03 -0.28 6.31 -29.03 -0.18 -0.46 16 7 C 0.10 1.17 5.63 -84.20 -0.47 0.69 16 8 C -0.32 -3.41 11.05 29.06 0.32 -3.09 16 9 S 0.25 3.28 20.22 -107.50 -2.17 1.11 16 10 C 0.26 3.81 8.19 -87.35 -0.72 3.10 16 11 N -0.62 -8.90 5.40 -13.07 -0.07 -8.98 16 12 C 0.53 8.17 7.04 -10.99 -0.08 8.09 16 13 O -0.50 -8.55 13.72 5.55 0.08 -8.47 16 14 C 0.08 1.32 3.21 -68.86 -0.22 1.10 16 15 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 16 N -0.83 -13.00 8.94 -5.65 -0.05 -13.05 16 17 C -0.14 -2.58 4.78 -26.73 -0.13 -2.71 16 18 C 0.02 0.57 4.74 -27.89 -0.13 0.43 16 19 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 20 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 23 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 N -0.50 -7.38 9.73 -11.28 -0.11 -7.49 16 28 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 33 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.12 0.61 8.02 -51.93 -0.42 0.19 16 35 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.43 5.36 8.82 -40.82 -0.36 5.00 16 37 H 0.35 5.42 8.58 -39.29 -0.34 5.09 16 38 H 0.36 5.69 7.55 -39.29 -0.30 5.40 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -33.60 382.84 -8.61 -42.21 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.96 Total: 9.10 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.12 Total: 0.13 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.51 Total: -54.31 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.61 Total: -19.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.17 Total: 1.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.60 -8.61 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424085792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.792 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds