Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.47380 * 2 1 4 4 C 1.34223 * 117.00031 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00318 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99911 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47191 * 180.02562 * 6 4 3 8 8 C 1.33438 * 122.71624 * 124.99596 * 7 6 4 9 9 S 1.76179 * 108.06112 * 179.97438 * 8 7 6 10 10 C 1.70972 * 90.33800 * 0.02562 * 9 8 7 11 11 N 1.39001 * 124.94343 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00156 * 0.03162 * 11 10 9 13 13 O 1.21287 * 119.99550 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00347 * 179.97438 * 12 11 10 15 15 H 1.09006 * 109.46689 * 319.99501 * 14 12 11 16 16 N 1.46899 * 109.46846 * 199.99763 * 14 12 11 17 17 C 1.52996 * 109.47032 * 79.99627 * 14 12 11 18 18 C 1.52998 * 109.46929 * 185.00304 * 17 14 12 19 19 C 1.50706 * 109.47348 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99302 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00436 * 179.72505 * 19 18 17 22 22 N 1.31514 * 120.00481 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99745 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47209 * 90.00365 * 23 21 19 25 25 H 1.48506 * 109.47294 * 210.00213 * 23 21 19 26 26 H 1.48501 * 109.47275 * 330.00116 * 23 21 19 27 27 N 1.29621 * 110.11177 * 0.24346 * 10 9 8 28 28 H 1.09002 * 109.46727 * 60.00075 * 1 2 3 29 29 H 1.08999 * 109.46791 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46730 * 300.00181 * 1 2 3 31 31 H 1.08998 * 109.47127 * 239.99513 * 2 1 3 32 32 H 1.09002 * 109.46727 * 119.99925 * 2 1 3 33 33 H 1.08999 * 109.47310 * 59.99672 * 6 4 3 34 34 H 1.08999 * 109.46794 * 299.99795 * 6 4 3 35 35 H 1.07999 * 125.97155 * 359.96551 * 8 7 6 36 36 H 0.97006 * 120.00122 * 180.02562 * 11 10 9 37 37 H 1.00897 * 111.00222 * 299.99256 * 16 14 12 38 38 H 1.00891 * 111.00353 * 63.95436 * 16 14 12 39 39 H 1.09000 * 109.47441 * 65.00394 * 17 14 12 40 40 H 1.09002 * 109.47087 * 304.99840 * 17 14 12 41 41 H 1.09001 * 109.47671 * 60.00109 * 18 17 14 42 42 H 1.08998 * 109.47454 * 300.00107 * 18 17 14 43 43 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0012 7 6 5.4258 2.8584 0.0010 8 6 6.1797 3.4641 -0.9184 9 16 7.8685 3.1200 -0.5531 10 6 7.3966 2.1923 0.8033 11 7 8.2709 1.5410 1.6656 12 6 9.6008 1.6162 1.4603 13 8 10.0346 2.2519 0.5228 14 6 10.5488 0.9106 2.3954 15 1 10.1942 1.0172 3.4207 16 7 11.8871 1.5045 2.2759 17 6 10.6149 -0.5736 2.0302 18 6 11.4785 -1.3128 3.0543 19 6 11.5432 -2.7750 2.6950 20 1 11.0202 -3.1404 1.8236 21 6 12.2742 -3.6451 3.4757 22 7 12.3310 -4.9209 3.1619 23 14 13.1850 -3.0114 4.9785 24 1 12.2950 -3.0867 6.1650 25 1 14.3930 -3.8429 5.2123 26 1 13.5910 -1.6009 4.7530 27 7 6.1046 2.1800 0.9072 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5846 3.4692 0.8911 34 1 3.5852 3.4697 -0.8888 35 1 5.8178 4.0608 -1.7426 36 1 7.9239 1.0324 2.4151 37 1 12.2381 1.4183 1.3339 38 1 11.8828 2.4685 2.5735 39 1 11.0527 -0.6846 1.0382 40 1 9.6090 -0.9936 2.0326 41 1 11.0409 -1.2019 4.0464 42 1 12.4844 -0.8929 3.0520 43 1 12.8456 -5.5330 3.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424085795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -80.448990 kcal Electronic energy + Delta-G solvation = -26347.812677 eV Core-core repulsion = 22327.022660 eV Total energy + Delta-G solvation = -4020.790018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96500 -40.58401 -39.52729 -36.80245 -35.74532 -35.23237 -32.85121 -32.46641 -31.54493 -30.61053 -28.63937 -27.20371 -25.08601 -23.92925 -23.06222 -21.57753 -21.43985 -20.31663 -19.64420 -18.41128 -17.95551 -17.29594 -17.14057 -16.80922 -16.68696 -16.25344 -15.88767 -15.45682 -15.06847 -14.67495 -14.38989 -14.21349 -14.10345 -13.71957 -13.47657 -13.25259 -13.08361 -12.94041 -12.66806 -12.53950 -12.12615 -11.91311 -11.81209 -11.78698 -11.13767 -11.09601 -10.92824 -10.80064 -10.63797 -10.50204 -10.01541 -9.87864 -9.82678 -9.66513 -9.29636 -9.16122 -8.74251 -8.49797 -8.42836 -6.01566 -3.99987 0.58172 1.03262 1.68549 1.99645 2.05628 2.37673 2.52231 2.92509 3.34208 3.42144 3.48711 4.03502 4.43019 4.48911 4.53332 4.59128 4.64887 4.68428 4.72400 4.94014 4.95487 5.07809 5.15327 5.32994 5.33543 5.35374 5.42269 5.44331 5.57906 5.62358 5.99406 6.17235 6.22693 6.32701 6.67645 6.77537 7.10056 7.28676 7.45995 7.51354 7.58824 7.61355 7.66378 7.81999 8.54641 9.02832 9.60640 11.11840 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.002457 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.842815 B =11395.377847 C =13428.958743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.482 6.482 6 C -0.032 4.032 7 C 0.097 3.903 8 C -0.316 4.316 9 S 0.246 5.754 10 C 0.251 3.749 11 N -0.621 5.621 12 C 0.483 3.517 13 O -0.515 6.515 14 C 0.086 3.914 15 H 0.109 0.891 16 N -0.805 5.805 17 C -0.091 4.091 18 C -0.003 4.003 19 C -0.523 4.523 20 H 0.069 0.931 21 C 0.066 3.934 22 N -0.905 5.905 23 Si 0.880 3.120 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.260 1.260 27 N -0.495 5.495 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.176 0.824 36 H 0.427 0.573 37 H 0.353 0.647 38 H 0.339 0.661 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.010 0.990 42 H 0.036 0.964 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.300 20.572 -6.726 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.282 6.282 4 C 0.301 3.699 5 O -0.367 6.367 6 C -0.072 4.072 7 C -0.037 4.037 8 C -0.457 4.457 9 S 0.498 5.502 10 C -0.116 4.116 11 N -0.271 5.271 12 C 0.269 3.731 13 O -0.390 6.390 14 C -0.031 4.031 15 H 0.126 0.874 16 N -0.334 5.334 17 C -0.130 4.130 18 C -0.041 4.041 19 C -0.561 4.561 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.544 5.544 23 Si 0.707 3.293 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.184 1.184 27 N -0.218 5.218 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.194 0.806 36 H 0.267 0.733 37 H 0.168 0.832 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.054 0.946 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.584 19.879 -6.758 28.040 hybrid contribution -1.252 0.308 0.524 1.391 sum -19.836 20.187 -6.234 28.980 Atomic orbital electron populations 1.21807 0.92600 1.03049 1.03412 1.23023 0.95250 0.80067 1.02838 1.86461 1.24530 1.32604 1.84560 1.23369 0.80556 0.92557 0.73456 1.90752 1.60140 1.42668 1.43100 1.19790 0.88572 0.92164 1.06709 1.18936 0.95119 0.97299 0.92350 1.27189 0.99162 1.12293 1.07045 1.84936 1.01881 1.43359 1.20065 1.23499 0.90526 1.00158 0.97462 1.43269 1.05187 1.49488 1.29112 1.23495 0.81837 0.80359 0.87425 1.90595 1.75701 1.41640 1.31036 1.21949 0.86372 0.97213 0.97523 0.87366 1.59013 1.19779 1.22861 1.31735 1.21569 1.01741 0.87754 1.01891 1.19489 0.95907 0.95502 0.93179 1.21149 1.31323 0.90909 1.12747 0.91256 1.25016 0.96083 0.94695 0.97697 1.69920 1.41918 1.03006 1.39540 0.86772 0.79559 0.79714 0.83272 1.20476 1.21576 1.18407 1.66030 1.03324 1.23049 1.29352 0.91543 0.90186 0.91468 0.91238 0.91072 0.86128 0.86048 0.80636 0.73332 0.83201 0.84892 0.91769 0.91831 0.97167 0.94620 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.55 10.22 -39.24 -0.40 -3.95 16 4 C 0.46 5.23 7.92 36.01 0.29 5.51 16 5 O -0.48 -7.51 15.18 -18.75 -0.28 -7.79 16 6 C -0.03 -0.27 6.31 -29.03 -0.18 -0.45 16 7 C 0.10 1.12 5.64 -84.20 -0.47 0.65 16 8 C -0.32 -3.22 11.05 29.05 0.32 -2.90 16 9 S 0.25 3.05 20.22 -107.50 -2.17 0.88 16 10 C 0.25 3.54 8.19 -87.35 -0.72 2.83 16 11 N -0.62 -8.19 5.40 -13.07 -0.07 -8.26 16 12 C 0.48 6.72 7.03 -10.98 -0.08 6.65 16 13 O -0.51 -7.88 13.72 5.55 0.08 -7.80 16 14 C 0.09 1.22 3.15 -68.87 -0.22 1.00 16 15 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 16 N -0.81 -11.20 8.44 -5.65 -0.05 -11.24 16 17 C -0.09 -1.68 4.78 -26.73 -0.13 -1.80 16 18 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 19 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 20 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 21 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 23 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 27 N -0.50 -7.07 9.71 -11.28 -0.11 -7.18 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 33 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.12 0.58 8.03 -51.93 -0.42 0.16 16 35 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.43 4.95 8.82 -40.82 -0.36 4.59 16 37 H 0.35 4.97 8.58 -39.29 -0.34 4.64 16 38 H 0.34 3.90 9.06 -39.30 -0.36 3.54 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.01 0.22 7.58 -51.93 -0.39 -0.17 16 42 H 0.04 0.84 6.79 -51.93 -0.35 0.48 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -36.13 381.16 -8.31 -44.44 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.03 Total: 7.12 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.12 Total: -1.67 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.55 Total: -53.98 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.61 Total: -19.55 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.17 Total: 0.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.13 -8.31 -44.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424085795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.008 kcal (2) G-P(sol) polarization free energy of solvation -36.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds