Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34871 * 117.00740 * 2 1 4 4 O 1.21617 * 119.99709 * 0.02562 * 3 2 1 5 5 C 1.46501 * 120.00213 * 179.97438 * 3 2 1 6 6 C 1.36754 * 126.17658 * 0.02982 * 5 3 2 7 7 N 1.30918 * 113.92934 * 180.02562 * 6 5 3 8 8 C 1.29391 * 117.46796 * 359.97438 * 7 6 5 9 9 C 1.50702 * 124.70851 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47488 * 195.02813 * 9 8 7 11 11 C 1.52999 * 109.47105 * 75.02629 * 9 8 7 12 12 N 1.46507 * 109.47109 * 315.02978 * 9 8 7 13 13 C 1.34775 * 119.99876 * 205.00070 * 12 9 8 14 14 O 1.21583 * 120.00144 * 359.97438 * 13 12 9 15 15 N 1.34777 * 119.99585 * 179.97438 * 13 12 9 16 16 C 1.46499 * 119.99665 * 179.72218 * 15 13 12 17 17 C 1.53004 * 109.47198 * 180.27868 * 16 15 13 18 18 C 1.52997 * 109.47000 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46940 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00043 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00213 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00116 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47136 * 90.00100 * 23 21 19 25 25 H 1.48499 * 109.47548 * 209.99879 * 23 21 19 26 26 H 1.48499 * 109.47078 * 330.00388 * 23 21 19 27 27 S 1.70925 * 110.58853 * 0.24867 * 8 7 6 28 28 H 1.09006 * 109.47028 * 300.00036 * 1 2 3 29 29 H 1.09006 * 109.47095 * 59.99650 * 1 2 3 30 30 H 1.08992 * 109.48119 * 179.97438 * 1 2 3 31 31 H 1.07993 * 123.03959 * 0.03491 * 6 5 3 32 32 H 1.09003 * 109.47054 * 60.00071 * 11 9 8 33 33 H 1.08996 * 109.47245 * 180.02562 * 11 9 8 34 34 H 1.09003 * 109.46809 * 300.00456 * 11 9 8 35 35 H 0.97000 * 119.99601 * 24.99409 * 12 9 8 36 36 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 37 37 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 38 38 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 39 39 H 1.08995 * 109.46638 * 300.00121 * 17 16 15 40 40 H 1.09006 * 109.47139 * 60.00254 * 17 16 15 41 41 H 1.08995 * 109.47672 * 299.99669 * 18 17 16 42 42 H 1.09007 * 109.47288 * 60.00489 * 18 17 16 43 43 H 0.97000 * 120.00572 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2016 0.0000 4 8 1.4021 2.2217 0.0005 5 6 3.5274 1.2782 0.0006 6 6 4.3912 0.2180 0.0006 7 7 5.6543 0.5622 0.0017 8 6 5.9283 1.8267 0.0021 9 6 7.3208 2.4030 0.0039 10 1 7.2767 3.4590 0.2704 11 6 7.9363 2.2537 -1.3888 12 7 8.1445 1.6867 0.9811 13 6 9.2160 2.2913 1.5313 14 8 9.4994 3.4309 1.2164 15 7 9.9734 1.6325 2.4307 16 6 11.1417 2.2875 3.0242 17 6 11.8244 1.3266 3.9997 18 6 13.0449 2.0104 4.6190 19 6 13.7170 1.0642 5.5803 20 1 13.3141 0.0740 5.7338 21 6 14.8461 1.4626 6.2639 22 7 15.3364 2.6686 6.0774 23 14 15.6795 0.2895 7.4549 24 1 16.7016 -0.5080 6.7306 25 1 16.3341 1.0660 8.5383 26 1 14.6655 -0.6224 8.0426 27 16 4.4918 2.7530 0.0080 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0275 -0.0005 31 1 4.0613 -0.8103 -0.0004 32 1 7.3235 2.7866 -2.1159 33 1 8.9436 2.6701 -1.3874 34 1 7.9804 1.1977 -1.6553 35 1 7.9185 0.7774 1.2321 36 1 9.7476 0.7231 2.6817 37 1 11.8426 2.5641 2.2364 38 1 10.8240 3.1827 3.5586 39 1 11.1237 1.0500 4.7874 40 1 12.1423 0.4313 3.4652 41 1 13.7455 2.2867 3.8311 42 1 12.7275 2.9059 5.1534 43 1 16.1306 2.9490 6.5586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425452522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = -80.216800 kcal Electronic energy + Delta-G solvation = -25511.687155 eV Core-core repulsion = 21490.907206 eV Total energy + Delta-G solvation = -4020.779949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.03486 -40.42907 -39.66266 -36.98919 -36.25864 -35.08348 -33.36271 -32.06833 -31.13336 -30.18695 -28.08736 -26.73401 -26.49847 -23.79632 -23.17897 -22.48440 -21.02835 -20.56188 -20.07375 -19.10022 -18.21136 -17.82035 -17.05537 -16.98760 -16.49844 -16.00691 -15.63647 -15.33286 -15.06695 -14.74614 -14.44015 -14.36413 -14.14300 -14.07475 -13.79676 -13.64158 -13.06964 -12.80473 -12.46677 -12.27758 -12.11608 -11.85798 -11.80648 -11.65548 -11.45675 -11.39609 -10.90217 -10.72507 -10.59230 -10.33714 -10.20096 -10.11174 -9.85769 -9.60894 -9.43954 -9.33763 -9.12140 -8.66979 -8.36659 -6.01332 -4.04387 -0.52552 0.37044 0.99099 1.63888 2.23726 2.36582 2.76357 3.22385 3.31164 3.37630 3.39451 3.40390 4.16887 4.20790 4.32562 4.45621 4.56018 4.57384 4.64816 4.78124 4.83540 4.98896 5.26165 5.34505 5.43289 5.52064 5.67350 5.70255 5.81111 5.90318 6.17324 6.26025 6.50522 6.62299 6.77386 6.94242 7.01380 7.03489 7.08526 7.64298 7.77073 7.97510 8.07989 8.38459 8.66591 9.02274 9.59787 11.09895 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.001609 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.067364 B =17398.644547 C =18159.950543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.349 6.349 3 C 0.550 3.450 4 O -0.503 6.503 5 C -0.311 4.311 6 C 0.134 3.866 7 N -0.472 5.472 8 C 0.043 3.957 9 C 0.240 3.760 10 H 0.112 0.888 11 C -0.158 4.158 12 N -0.740 5.740 13 C 0.704 3.296 14 O -0.591 6.591 15 N -0.738 5.738 16 C 0.135 3.865 17 C -0.121 4.121 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 S 0.274 5.726 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.194 0.806 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.404 0.596 36 H 0.395 0.605 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.608 -5.416 -16.727 34.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.265 6.265 3 C 0.393 3.607 4 O -0.392 6.392 5 C -0.434 4.434 6 C -0.027 4.027 7 N -0.186 5.186 8 C -0.231 4.231 9 C 0.131 3.869 10 H 0.130 0.870 11 C -0.218 4.218 12 N -0.398 5.398 13 C 0.403 3.597 14 O -0.469 6.469 15 N -0.392 5.392 16 C 0.012 3.988 17 C -0.159 4.159 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 S 0.534 5.466 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.211 0.789 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.239 0.761 36 H 0.228 0.772 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.150 -3.132 -16.917 33.849 hybrid contribution -0.280 -2.462 0.929 2.647 sum -29.430 -5.594 -15.988 33.956 Atomic orbital electron populations 1.23371 0.75039 1.04207 1.02962 1.86557 1.24110 1.31517 1.84320 1.19316 0.86491 0.82009 0.72895 1.90935 1.66426 1.35715 1.46095 1.25061 0.96036 0.98686 1.23608 1.22730 0.85474 1.00663 0.93801 1.66079 1.20100 1.15870 1.16589 1.27897 1.01875 0.92796 1.00499 1.19266 0.80575 0.96403 0.90697 0.87034 1.22227 1.02449 1.03396 0.93762 1.45043 1.29628 1.18505 1.46648 1.15942 0.79656 0.84650 0.79417 1.90925 1.72733 1.17199 1.66075 1.45381 1.30602 1.18170 1.45062 1.21542 0.84664 0.96383 0.96221 1.21898 0.99287 0.97979 0.96727 1.19030 0.90855 0.95936 0.95565 1.21208 1.10775 0.99999 1.24128 0.92655 1.25023 0.97178 0.95183 0.97047 1.69962 1.22838 1.17952 1.42477 0.86584 0.79647 0.80884 0.80806 1.20669 1.21217 1.19928 1.84260 0.94798 1.05668 1.61890 0.91495 0.91539 0.87496 0.78922 0.91371 0.90028 0.91307 0.76125 0.77151 0.91824 0.91860 0.92751 0.92720 0.96216 0.96224 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.57 101.05 1.07 1.23 16 2 O -0.35 -2.47 10.37 -40.96 -0.42 -2.90 16 3 C 0.55 4.94 7.92 34.06 0.27 5.21 16 4 O -0.50 -5.71 16.76 -19.36 -0.32 -6.04 16 5 C -0.31 -2.55 6.51 -36.79 -0.24 -2.79 16 6 C 0.13 0.97 11.20 -18.48 -0.21 0.77 16 7 N -0.47 -3.96 10.10 -11.26 -0.11 -4.08 16 8 C 0.04 0.36 6.20 -13.31 -0.08 0.27 16 9 C 0.24 2.24 3.07 -69.08 -0.21 2.03 16 10 H 0.11 1.10 7.57 -51.93 -0.39 0.70 16 11 C -0.16 -1.33 9.47 37.16 0.35 -0.98 16 12 N -0.74 -7.89 5.07 -59.81 -0.30 -8.19 16 13 C 0.70 10.17 8.53 -86.92 -0.74 9.43 16 14 O -0.59 -10.74 16.01 5.29 0.08 -10.66 16 15 N -0.74 -10.39 5.56 -65.22 -0.36 -10.75 16 16 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 17 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 23 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 S 0.27 2.12 23.00 -107.50 -2.47 -0.36 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.40 3.67 8.30 -40.82 -0.34 3.33 16 36 H 0.40 4.49 8.49 -40.82 -0.35 4.15 16 37 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -34.54 391.13 -8.93 -43.47 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.12 Total: 1.01 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.51 Total: 2.15 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.04 Total: -48.99 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.66 Total: -19.59 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.47 Total: -0.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.54 -8.93 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425452522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.746 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds