Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34871 * 117.00740 * 2 1 4 4 O 1.21617 * 119.99709 * 0.02562 * 3 2 1 5 5 C 1.46501 * 120.00213 * 179.97438 * 3 2 1 6 6 C 1.36754 * 126.17658 * 0.02982 * 5 3 2 7 7 N 1.30918 * 113.92934 * 180.02562 * 6 5 3 8 8 C 1.29391 * 117.46796 * 359.97438 * 7 6 5 9 9 C 1.50702 * 124.70851 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47488 * 195.02813 * 9 8 7 11 11 C 1.52999 * 109.47105 * 75.02629 * 9 8 7 12 12 N 1.46507 * 109.47109 * 315.02978 * 9 8 7 13 13 C 1.34775 * 119.99876 * 205.00070 * 12 9 8 14 14 O 1.21583 * 120.00144 * 359.97438 * 13 12 9 15 15 N 1.34777 * 119.99585 * 179.97438 * 13 12 9 16 16 C 1.46499 * 119.99665 * 179.72218 * 15 13 12 17 17 C 1.53004 * 109.47198 * 180.27868 * 16 15 13 18 18 C 1.52997 * 109.47000 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46940 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00043 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00213 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00116 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47136 * 90.00100 * 23 21 19 25 25 H 1.48499 * 109.47548 * 209.99879 * 23 21 19 26 26 H 1.48499 * 109.47078 * 330.00388 * 23 21 19 27 27 S 1.70925 * 110.58853 * 0.24867 * 8 7 6 28 28 H 1.09006 * 109.47028 * 300.00036 * 1 2 3 29 29 H 1.09006 * 109.47095 * 59.99650 * 1 2 3 30 30 H 1.08992 * 109.48119 * 179.97438 * 1 2 3 31 31 H 1.07993 * 123.03959 * 0.03491 * 6 5 3 32 32 H 1.09003 * 109.47054 * 60.00071 * 11 9 8 33 33 H 1.08996 * 109.47245 * 180.02562 * 11 9 8 34 34 H 1.09003 * 109.46809 * 300.00456 * 11 9 8 35 35 H 0.97000 * 119.99601 * 24.99409 * 12 9 8 36 36 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 37 37 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 38 38 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 39 39 H 1.08995 * 109.46638 * 300.00121 * 17 16 15 40 40 H 1.09006 * 109.47139 * 60.00254 * 17 16 15 41 41 H 1.08995 * 109.47672 * 299.99669 * 18 17 16 42 42 H 1.09007 * 109.47288 * 60.00489 * 18 17 16 43 43 H 0.97000 * 120.00572 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2016 0.0000 4 8 1.4021 2.2217 0.0005 5 6 3.5274 1.2782 0.0006 6 6 4.3912 0.2180 0.0006 7 7 5.6543 0.5622 0.0017 8 6 5.9283 1.8267 0.0021 9 6 7.3208 2.4030 0.0039 10 1 7.2767 3.4590 0.2704 11 6 7.9363 2.2537 -1.3888 12 7 8.1445 1.6867 0.9811 13 6 9.2160 2.2913 1.5313 14 8 9.4994 3.4309 1.2164 15 7 9.9734 1.6325 2.4307 16 6 11.1417 2.2875 3.0242 17 6 11.8244 1.3266 3.9997 18 6 13.0449 2.0104 4.6190 19 6 13.7170 1.0642 5.5803 20 1 13.3141 0.0740 5.7338 21 6 14.8461 1.4626 6.2639 22 7 15.3364 2.6686 6.0774 23 14 15.6795 0.2895 7.4549 24 1 16.7016 -0.5080 6.7306 25 1 16.3341 1.0660 8.5383 26 1 14.6655 -0.6224 8.0426 27 16 4.4918 2.7530 0.0080 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0275 -0.0005 31 1 4.0613 -0.8103 -0.0004 32 1 7.3235 2.7866 -2.1159 33 1 8.9436 2.6701 -1.3874 34 1 7.9804 1.1977 -1.6553 35 1 7.9185 0.7774 1.2321 36 1 9.7476 0.7231 2.6817 37 1 11.8426 2.5641 2.2364 38 1 10.8240 3.1827 3.5586 39 1 11.1237 1.0500 4.7874 40 1 12.1423 0.4313 3.4652 41 1 13.7455 2.2867 3.8311 42 1 12.7275 2.9059 5.1534 43 1 16.1306 2.9490 6.5586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425452522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -104.406022 kcal Electronic energy + Delta-G solvation = -25512.736078 eV Core-core repulsion = 21490.907206 eV Total energy + Delta-G solvation = -4021.828873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68580 -41.29285 -40.55631 -37.61945 -37.38441 -36.40637 -35.17816 -33.38056 -32.28263 -31.13344 -28.52835 -28.39114 -27.24244 -25.15144 -24.16833 -23.34240 -22.27816 -21.97844 -20.85872 -19.97864 -18.98228 -18.75257 -18.40338 -17.66952 -17.57180 -17.10128 -16.82418 -16.48782 -16.10140 -15.79765 -15.76287 -15.38247 -15.27772 -14.73860 -14.64925 -14.37907 -14.23655 -13.95833 -13.71133 -13.43569 -13.22383 -13.14413 -12.74048 -12.67872 -12.52404 -12.48957 -12.34700 -12.14017 -11.90231 -11.64963 -11.64034 -11.31258 -11.15062 -10.95451 -10.77262 -10.53121 -10.45889 -10.17543 -9.84038 -8.17439 -6.28678 -1.15815 -0.24548 0.38222 0.98796 1.43120 1.44298 1.55102 1.63652 1.71810 1.80976 2.10788 2.43563 2.68819 3.16398 3.29098 3.55767 3.60041 4.01982 4.04789 4.13576 4.20094 4.27182 4.27479 4.32169 4.59749 4.62651 4.71156 4.80157 4.87700 4.99677 5.02169 5.11625 5.19917 5.20312 5.34873 5.48554 5.56495 5.74512 5.86936 5.95142 6.25180 6.32154 6.46437 6.88601 7.05291 7.40777 7.53433 8.94512 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.001609 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.067364 B =17398.644547 C =18159.950543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.347 6.347 3 C 0.552 3.448 4 O -0.534 6.534 5 C -0.324 4.324 6 C 0.144 3.856 7 N -0.479 5.479 8 C 0.041 3.959 9 C 0.237 3.763 10 H 0.106 0.894 11 C -0.153 4.153 12 N -0.724 5.724 13 C 0.704 3.296 14 O -0.630 6.630 15 N -0.729 5.729 16 C 0.150 3.850 17 C -0.101 4.101 18 C 0.023 3.977 19 C -0.541 4.541 20 H 0.066 0.934 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.261 1.261 27 S 0.284 5.716 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.411 0.589 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.068 0.932 41 H -0.007 1.007 42 H -0.007 1.007 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.970 -7.946 -16.784 36.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C 0.396 3.604 4 O -0.426 6.426 5 C -0.447 4.447 6 C -0.017 4.017 7 N -0.194 5.194 8 C -0.232 4.232 9 C 0.128 3.872 10 H 0.124 0.876 11 C -0.213 4.213 12 N -0.381 5.381 13 C 0.404 3.596 14 O -0.511 6.511 15 N -0.384 5.384 16 C 0.026 3.974 17 C -0.139 4.139 18 C -0.015 4.015 19 C -0.579 4.579 20 H 0.084 0.916 21 C -0.200 4.200 22 N -0.574 5.574 23 Si 0.791 3.209 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.185 1.185 27 S 0.545 5.455 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.235 0.765 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.251 0.749 36 H 0.248 0.752 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.012 0.988 42 H 0.011 0.989 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.561 -5.730 -16.989 35.432 hybrid contribution 0.049 -1.683 0.901 1.910 sum -30.512 -7.413 -16.088 35.281 Atomic orbital electron populations 1.23675 0.73499 1.06261 1.02882 1.86555 1.25621 1.30399 1.83726 1.19451 0.86719 0.82107 0.72101 1.90919 1.67099 1.36751 1.47822 1.25141 0.95962 0.99106 1.24449 1.23082 0.84756 1.01506 0.92377 1.66124 1.20695 1.15743 1.16820 1.27655 1.01450 0.93109 1.00946 1.19338 0.81064 0.96066 0.90722 0.87641 1.22168 1.01670 1.03757 0.93661 1.44879 1.28393 1.18799 1.46074 1.16007 0.80207 0.84146 0.79274 1.90905 1.73868 1.19063 1.67304 1.45037 1.29659 1.18789 1.44945 1.21095 0.85420 0.95577 0.95329 1.21595 0.97127 0.97973 0.97246 1.18947 0.92714 0.95238 0.94571 1.21693 1.11106 1.00741 1.24405 0.91585 1.26001 0.98064 0.96896 0.99056 1.70108 1.23464 1.20066 1.43786 0.85429 0.78661 0.78605 0.78220 1.19848 1.21089 1.18520 1.84275 0.94290 1.05514 1.61448 0.91728 0.91549 0.84378 0.76501 0.89388 0.91882 0.90934 0.74883 0.75229 0.93203 0.93297 0.91478 0.91375 0.98811 0.98860 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.57 113.37 1.20 1.41 16 2 O -0.35 -4.35 10.37 -57.85 -0.60 -4.95 16 3 C 0.55 9.35 7.92 69.98 0.55 9.90 16 4 O -0.53 -11.96 16.76 19.45 0.33 -11.63 16 5 C -0.32 -4.84 6.51 24.08 0.16 -4.68 16 6 C 0.14 1.76 11.20 84.48 0.95 2.71 16 7 N -0.48 -7.02 10.10 -189.54 -1.92 -8.94 16 8 C 0.04 0.63 6.20 88.47 0.55 1.17 16 9 C 0.24 4.17 3.07 44.24 0.14 4.31 16 10 H 0.11 2.03 7.57 -2.39 -0.02 2.01 16 11 C -0.15 -2.41 9.47 71.98 0.68 -1.73 16 12 N -0.72 -14.48 5.07 -461.41 -2.34 -16.82 16 13 C 0.70 19.88 8.53 179.05 1.53 21.41 16 14 O -0.63 -23.08 16.01 -3.98 -0.06 -23.14 16 15 N -0.73 -19.70 5.56 -478.53 -2.66 -22.36 16 16 C 0.15 5.22 5.67 86.38 0.49 5.71 16 17 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 18 C 0.02 1.19 4.97 29.85 0.15 1.34 16 19 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 20 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 21 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 22 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 23 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 27 S 0.28 4.11 23.00 -56.49 -1.30 2.81 16 28 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 6.67 8.30 -92.71 -0.77 5.90 16 36 H 0.41 8.44 8.49 -92.71 -0.79 7.66 16 37 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -75.13 391.13 0.50 -74.63 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -0.50 Total: 12.93 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 7.24 Total: 8.34 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -6.63 Total: -104.68 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.34 Total: -39.72 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.30 Total: 2.81 kcal Total: -75.13 0.50 -74.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425452522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.774 kcal (2) G-P(sol) polarization free energy of solvation -75.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds