Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47522 * 2 1 4 4 C 1.35923 * 116.99985 * 184.97492 * 3 2 1 5 5 C 1.38850 * 120.05978 * 273.79900 * 4 3 2 6 6 Cl 1.73599 * 120.04134 * 0.04629 * 5 4 3 7 7 C 1.38217 * 119.92365 * 180.02562 * 5 4 3 8 8 C 1.38298 * 120.04279 * 0.02562 * 7 5 4 9 9 C 1.38232 * 120.11454 * 359.67805 * 8 7 5 10 10 C 1.38189 * 120.07952 * 0.60261 * 9 8 7 11 11 C 1.50706 * 120.02514 * 179.69805 * 10 9 8 12 12 C 1.50693 * 109.46920 * 264.30092 * 11 10 9 13 13 O 1.21294 * 120.00384 * 5.56636 * 12 11 10 14 14 N 1.34782 * 119.99926 * 185.56478 * 12 11 10 15 15 C 1.37095 * 119.99655 * 354.64245 * 14 12 11 16 16 H 1.07998 * 120.00694 * 323.23809 * 15 14 12 17 17 C 1.38959 * 119.99618 * 143.23990 * 15 14 12 18 18 N 1.31415 * 119.99566 * 159.98209 * 17 15 14 19 19 Si 1.86797 * 120.00099 * 339.98562 * 17 15 14 20 20 H 1.48501 * 109.47179 * 95.46454 * 19 17 15 21 21 H 1.48499 * 109.46995 * 215.46282 * 19 17 15 22 22 H 1.48500 * 109.46965 * 335.46096 * 19 17 15 23 23 C 1.46501 * 120.00064 * 174.36532 * 14 12 11 24 24 C 1.52999 * 109.47110 * 90.00077 * 23 14 12 25 25 O 1.42899 * 109.46946 * 65.00127 * 24 23 14 26 26 C 1.42901 * 113.99967 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.46767 * 300.00363 * 1 2 3 28 28 H 1.09000 * 109.46780 * 60.00063 * 1 2 3 29 29 H 1.08992 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47090 * 239.99203 * 2 1 3 31 31 H 1.09009 * 109.46897 * 119.99993 * 2 1 3 32 32 H 1.07999 * 119.98059 * 180.02562 * 7 5 4 33 33 H 1.08000 * 119.93894 * 179.97438 * 8 7 5 34 34 H 1.08010 * 119.95916 * 180.31580 * 9 8 7 35 35 H 1.08994 * 109.47265 * 144.29168 * 11 10 9 36 36 H 1.09005 * 109.46798 * 24.29753 * 11 10 9 37 37 H 0.97002 * 119.99660 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.46899 * 210.00307 * 23 14 12 39 39 H 1.09003 * 109.46952 * 330.00232 * 23 14 12 40 40 H 1.08997 * 109.47223 * 184.99939 * 24 23 14 41 41 H 1.08996 * 109.47089 * 305.00330 * 24 23 14 42 42 H 1.09003 * 109.46491 * 299.99669 * 26 25 24 43 43 H 1.08998 * 109.47511 * 59.99576 * 26 25 24 44 44 H 1.08997 * 109.47149 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3497 1.5267 -0.1050 5 6 4.1453 1.5050 1.0327 6 17 3.4260 1.2473 2.5915 7 6 5.5109 1.6884 0.9227 8 6 6.0841 1.8938 -0.3190 9 6 5.2943 1.9096 -1.4534 10 6 3.9278 1.7326 -1.3485 11 6 3.0672 1.7569 -2.5854 12 6 2.4961 3.1387 -2.7729 13 8 2.8405 4.0419 -2.0402 14 7 1.6025 3.3711 -3.7548 15 6 1.2957 2.3800 -4.6510 16 1 2.0648 1.7025 -4.9912 17 6 -0.0050 2.2473 -5.1217 18 7 -0.2364 1.5920 -6.2370 19 14 -1.4244 3.0003 -4.1690 20 1 -1.7448 4.3365 -4.7320 21 1 -2.6151 2.1194 -4.2764 22 1 -1.0417 3.1434 -2.7414 23 6 0.9546 4.6808 -3.8607 24 6 1.7931 5.5935 -4.7578 25 8 1.8085 5.0707 -6.0877 26 6 2.5691 5.8526 -7.0108 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 6.1306 1.6713 1.8070 33 1 7.1512 2.0373 -0.4030 34 1 5.7453 2.0652 -2.4225 35 1 2.2541 1.0393 -2.4764 36 1 3.6711 1.4925 -3.4535 37 1 -1.1444 1.4990 -6.5654 38 1 -0.0392 4.5606 -4.2921 39 1 0.8690 5.1251 -2.8690 40 1 1.3593 6.5934 -4.7656 41 1 2.8124 5.6425 -4.3749 42 1 2.1517 6.8581 -7.0653 43 1 3.6044 5.9067 -6.6744 44 1 2.5314 5.3893 -7.9967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = -102.320973 kcal Electronic energy + Delta-G solvation = -28757.352139 eV Core-core repulsion = 24701.277223 eV Total energy + Delta-G solvation = -4056.074915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44151 -40.40363 -38.63278 -38.40477 -37.45982 -36.62900 -33.94902 -33.71104 -32.72473 -31.26761 -30.44671 -28.42646 -27.23068 -26.48250 -24.34435 -24.22458 -23.25377 -22.65218 -20.81536 -19.15340 -18.65915 -18.19986 -17.77717 -17.48993 -17.10970 -16.88934 -16.34368 -16.17701 -16.09577 -15.72098 -15.50255 -15.36996 -15.30115 -14.49565 -14.38554 -14.21760 -13.95533 -13.64983 -13.49802 -13.32656 -13.19014 -13.11122 -13.00051 -12.69507 -12.61351 -12.44755 -12.41427 -12.26835 -12.21553 -11.96399 -11.83299 -11.67181 -11.05041 -10.81977 -10.61948 -10.41192 -9.72550 -9.65850 -9.54061 -8.41952 -5.99612 0.09520 0.19067 1.11355 1.18910 1.31160 1.41528 1.91832 2.22526 2.36100 2.62722 2.83795 2.92465 3.17826 3.66841 3.94556 4.02869 4.04681 4.13353 4.19424 4.27641 4.30655 4.33630 4.35602 4.36129 4.37812 4.50972 4.53868 4.55674 4.63054 4.72941 4.75707 4.83580 4.84650 4.92169 4.99770 5.16505 5.19488 5.32885 5.46127 5.49217 5.72558 6.10919 6.29834 6.39793 6.50684 7.04931 7.47853 7.82801 8.72565 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.004302 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.740339 B = 6507.212375 C = 7772.086976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.346 6.346 4 C 0.100 3.900 5 C -0.072 4.072 6 Cl -0.064 7.064 7 C -0.102 4.102 8 C -0.104 4.104 9 C -0.099 4.099 10 C -0.081 4.081 11 C -0.070 4.070 12 C 0.485 3.515 13 O -0.612 6.612 14 N -0.466 5.466 15 C -0.317 4.317 16 H 0.083 0.917 17 C 0.040 3.960 18 N -0.893 5.893 19 Si 0.917 3.083 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.094 3.906 24 C 0.062 3.938 25 O -0.395 6.395 26 C 0.027 3.973 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.275 0.725 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.877 -0.928 9.962 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 O -0.264 6.264 4 C 0.055 3.945 5 C -0.099 4.099 6 Cl -0.035 7.035 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.082 4.082 11 C -0.109 4.109 12 C 0.276 3.724 13 O -0.498 6.498 14 N -0.187 5.187 15 C -0.444 4.444 16 H 0.100 0.900 17 C -0.164 4.164 18 N -0.531 5.531 19 Si 0.745 3.255 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.194 1.194 23 C -0.029 4.029 24 C -0.015 4.015 25 O -0.314 6.314 26 C -0.069 4.069 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.181 0.819 33 H 0.189 0.811 34 H 0.162 0.838 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.577 -0.619 10.260 13.387 hybrid contribution -1.024 0.371 0.027 1.089 sum 7.554 -0.248 10.287 12.765 Atomic orbital electron populations 1.21778 0.92563 1.03835 1.02376 1.22870 0.96269 0.81240 1.01152 1.86089 1.18064 1.28572 1.93680 1.18417 0.83473 1.01337 0.91274 1.21491 0.94426 1.08009 0.85948 1.98333 1.84261 1.95055 1.25856 1.21299 0.91364 0.99303 1.00089 1.21458 1.01784 0.98500 0.90410 1.21329 0.91689 0.97749 1.00911 1.19895 0.95019 1.00424 0.92873 1.20189 0.99336 0.95351 0.96034 1.20608 0.82065 0.90497 0.79280 1.90525 1.64264 1.47209 1.47838 1.43723 1.38977 1.10112 1.25874 1.18744 0.94925 1.10718 1.20060 0.89973 1.25632 0.99352 0.96174 0.95212 1.69806 1.22296 1.42445 1.18544 0.86308 0.80322 0.78382 0.80518 1.19341 1.21261 1.19387 1.21820 0.96335 0.85759 0.98968 1.22758 0.99264 0.96269 0.83251 1.88158 1.72729 1.51658 1.18862 1.22860 0.94859 0.95716 0.93468 0.91663 0.93780 0.87919 0.92740 0.91508 0.81930 0.81063 0.83846 0.89104 0.87917 0.91498 0.92035 0.89744 0.90881 0.93782 0.92746 0.93926 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 10.28 71.98 0.74 -3.33 16 2 C 0.06 1.73 6.46 71.98 0.46 2.20 16 3 O -0.35 -12.89 8.73 -92.68 -0.81 -13.70 16 4 C 0.10 3.49 5.69 22.52 0.13 3.61 16 5 C -0.07 -2.11 6.33 22.41 0.14 -1.97 16 6 Cl -0.06 -1.71 28.21 -2.72 -0.08 -1.79 16 7 C -0.10 -2.36 9.83 22.28 0.22 -2.15 16 8 C -0.10 -2.27 10.04 22.28 0.22 -2.04 16 9 C -0.10 -2.77 9.67 22.26 0.22 -2.55 16 10 C -0.08 -2.84 4.39 -19.77 -0.09 -2.92 16 11 C -0.07 -2.77 4.26 29.10 0.12 -2.64 16 12 C 0.48 22.75 7.60 87.65 0.67 23.42 16 13 O -0.61 -30.77 15.69 -3.07 -0.05 -30.82 16 14 N -0.47 -22.74 2.19 -635.53 -1.39 -24.13 16 15 C -0.32 -16.62 8.54 84.04 0.72 -15.90 16 16 H 0.08 4.54 7.38 -2.91 -0.02 4.52 16 17 C 0.04 2.16 5.35 84.93 0.45 2.61 16 18 N -0.89 -50.02 13.96 21.67 0.30 -49.72 16 19 Si 0.92 43.12 24.82 68.60 1.70 44.82 16 20 H -0.27 -12.06 6.71 99.48 0.67 -11.39 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.27 -12.89 7.10 99.48 0.71 -12.18 16 23 C 0.09 4.26 4.57 86.38 0.39 4.66 16 24 C 0.06 2.47 6.28 71.98 0.45 2.92 16 25 O -0.40 -16.88 10.19 -148.98 -1.52 -18.40 16 26 C 0.03 0.84 11.01 113.37 1.25 2.09 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.58 7.66 -2.39 -0.02 1.57 16 31 H 0.07 1.72 7.87 -2.38 -0.02 1.71 16 32 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.09 3.74 6.83 -2.39 -0.02 3.72 16 36 H 0.10 3.79 7.71 -2.38 -0.02 3.77 16 37 H 0.28 14.50 8.31 -92.71 -0.77 13.72 16 38 H 0.06 2.89 2.95 -2.39 -0.01 2.88 16 39 H 0.08 3.72 7.51 -2.39 -0.02 3.70 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -68.40 380.54 5.23 -63.16 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.97 Total: 22.57 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.10 Total: 8.00 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.09 Total: -73.85 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -2.38 Total: -62.92 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.70 Total: 44.82 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -68.40 5.23 -63.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.160 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds