Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 S 1.81398 * 109.47172 * 179.97438 * 3 2 1 5 5 O 1.42097 * 110.54688 * 63.38946 * 4 3 2 6 6 O 1.42106 * 110.54420 * 286.64138 * 4 3 2 7 7 N 1.65604 * 104.45016 * 175.01645 * 4 3 2 8 8 C 1.39664 * 119.99867 * 63.49770 * 7 4 3 9 9 C 1.38987 * 120.04007 * 74.14861 * 8 7 4 10 10 C 1.38131 * 120.06744 * 180.02562 * 9 8 7 11 11 C 1.38186 * 120.13934 * 0.02562 * 10 9 8 12 12 C 1.38906 * 120.08334 * 359.97438 * 11 10 9 13 13 N 1.39933 * 120.03701 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00247 * 144.67380 * 13 12 11 15 15 O 1.21582 * 119.99777 * 4.65178 * 14 13 12 16 16 N 1.34775 * 120.00259 * 184.64372 * 14 13 12 17 17 C 1.46497 * 120.00109 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47179 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99865 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99982 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99870 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47282 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47116 * 120.00122 * 22 20 18 25 25 H 1.48503 * 109.47364 * 239.99989 * 22 20 18 26 26 C 1.38759 * 119.92930 * 359.97438 * 12 11 10 27 27 H 1.09010 * 109.46954 * 59.99922 * 1 2 3 28 28 H 1.08993 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47500 * 300.00208 * 1 2 3 30 30 H 1.09005 * 109.46967 * 240.00001 * 2 1 3 31 31 H 1.08997 * 109.47044 * 119.99820 * 2 1 3 32 32 H 1.09005 * 109.47175 * 60.00129 * 3 2 1 33 33 H 1.08997 * 109.46991 * 299.99852 * 3 2 1 34 34 H 0.96995 * 119.99668 * 243.49283 * 7 4 3 35 35 H 1.07996 * 119.97081 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.93115 * 179.97438 * 10 9 8 37 37 H 1.08005 * 119.96021 * 179.97438 * 11 10 9 38 38 H 0.96998 * 119.99943 * 324.67860 * 13 12 11 39 39 H 0.97003 * 119.99990 * 359.97438 * 16 14 13 40 40 H 1.08995 * 109.47500 * 300.00248 * 17 16 14 41 41 H 1.09003 * 109.47288 * 60.00349 * 17 16 14 42 42 H 0.97003 * 119.99480 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.06546 * 179.72346 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3532 0.8463 -1.1886 6 8 4.3521 1.0616 1.2760 7 7 4.2673 3.0401 -0.1386 8 6 3.9184 3.9421 0.8690 9 6 4.6053 3.9353 2.0773 10 6 4.2605 4.8268 3.0744 11 6 3.2317 5.7275 2.8745 12 6 2.5411 5.7395 1.6693 13 7 1.4998 6.6523 1.4677 14 6 1.3014 7.1897 0.2477 15 8 1.9720 6.8189 -0.6962 16 7 0.3597 8.1380 0.0741 17 6 0.1437 8.7218 -1.2521 18 6 -0.9563 9.7491 -1.1757 19 1 -1.4453 9.9476 -0.2334 20 6 -1.3377 10.4362 -2.3085 21 7 -0.7418 10.1948 -3.4559 22 14 -2.7007 11.7101 -2.2137 23 1 -3.2040 11.7936 -0.8190 24 1 -2.1707 13.0339 -2.6282 25 1 -3.8105 11.3159 -3.1182 26 6 2.8856 4.8460 0.6651 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 4.7516 3.3493 -0.9200 35 1 5.4096 3.2324 2.2367 36 1 4.7954 4.8194 4.0125 37 1 2.9641 6.4230 3.6563 38 1 0.9208 6.8983 2.2060 39 1 -0.1757 8.4336 0.8271 40 1 1.0628 9.1978 -1.5936 41 1 -0.1409 7.9367 -1.9527 42 1 -1.0105 10.6781 -4.2529 43 1 2.3472 4.8504 -0.2712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488538124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = -80.867512 kcal Electronic energy + Delta-G solvation = -27097.673004 eV Core-core repulsion = 23076.864838 eV Total energy + Delta-G solvation = -4020.808166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.40719 -38.78896 -37.28151 -36.19928 -35.66244 -35.19867 -34.37279 -33.83547 -32.43691 -29.89974 -28.96817 -28.01014 -27.05921 -23.46022 -22.73548 -22.28156 -21.97486 -20.39704 -19.59232 -18.45177 -18.14318 -17.91225 -16.71379 -16.41762 -16.20109 -16.07630 -15.66428 -15.34332 -14.96784 -14.75253 -14.64325 -14.00874 -13.87649 -13.71905 -13.26126 -13.03173 -12.99893 -12.84049 -12.49821 -12.33395 -12.25020 -12.08828 -12.03457 -11.87910 -11.79396 -11.65981 -11.28577 -11.01589 -10.99641 -10.91331 -10.39238 -10.29644 -10.09817 -9.55142 -9.46169 -8.84423 -8.81592 -8.25518 -7.84802 -6.24395 -4.31660 -0.03642 1.14929 1.34810 2.41322 3.02899 3.18386 3.26273 3.28896 3.43962 3.48943 3.83854 3.97095 4.19932 4.25021 4.45577 4.73330 4.78105 4.87731 4.94078 5.02856 5.12244 5.17254 5.20116 5.26730 5.29490 5.44921 5.59154 5.61653 5.62367 5.84526 5.92564 6.24082 6.33549 6.35672 6.52607 6.78596 6.91605 7.10221 7.28918 7.40608 7.42822 7.72309 7.90058 8.58420 8.74017 9.07109 9.35530 10.85718 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002528 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.231723 B =11071.566797 C =12049.138249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.627 4.627 4 S 2.607 3.393 5 O -0.956 6.956 6 O -0.950 6.950 7 N -1.062 6.062 8 C 0.133 3.867 9 C -0.128 4.128 10 C -0.094 4.094 11 C -0.145 4.145 12 C 0.184 3.816 13 N -0.696 5.696 14 C 0.690 3.310 15 O -0.582 6.582 16 N -0.720 5.720 17 C 0.266 3.734 18 C -0.544 4.544 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.120 4.120 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.426 0.574 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.405 0.595 39 H 0.389 0.611 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -16.523 13.251 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.757 4.757 4 S 2.702 3.298 5 O -0.947 6.947 6 O -0.940 6.940 7 N -0.816 5.816 8 C 0.038 3.962 9 C -0.149 4.149 10 C -0.113 4.113 11 C -0.166 4.166 12 C 0.087 3.913 13 N -0.344 5.344 14 C 0.390 3.610 15 O -0.460 6.460 16 N -0.372 5.372 17 C 0.145 3.855 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.264 0.736 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.240 0.760 39 H 0.222 0.778 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.616 -17.499 12.252 22.363 hybrid contribution -1.698 1.749 0.207 2.446 sum 4.918 -15.751 12.459 20.676 Atomic orbital electron populations 1.21720 0.93669 1.02270 1.02765 1.21256 0.98935 0.91722 1.03478 1.30607 1.26505 1.06139 1.12460 1.05219 0.77711 0.72416 0.74440 1.93611 1.78128 1.74546 1.48389 1.93601 1.77069 1.80704 1.42604 1.53102 1.71449 1.26785 1.30289 1.17085 0.96410 0.93926 0.88785 1.21459 1.00192 1.00005 0.93285 1.20802 0.96737 0.94825 0.98957 1.21034 0.96913 1.01152 0.97516 1.17354 0.89884 0.89686 0.94395 1.42819 1.33430 1.45912 1.12252 1.16179 0.81995 0.80573 0.82280 1.90877 1.50542 1.65088 1.39522 1.45796 1.36838 1.39612 1.14926 1.19069 0.96803 0.92854 0.76792 1.21228 1.19425 1.21959 0.95657 0.91821 1.24947 0.96876 0.97141 0.95024 1.69984 1.41165 1.41368 0.99601 0.86342 0.81313 0.80904 0.78219 1.19643 1.20756 1.20762 1.21659 0.98238 0.93567 1.00941 0.91991 0.91948 0.92131 0.90212 0.90501 0.84675 0.84439 0.73597 0.84890 0.85141 0.85400 0.75996 0.77837 0.95456 0.95499 0.92407 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.11 -0.90 5.94 -26.73 -0.16 -1.06 16 3 C -0.63 -5.37 5.99 37.16 0.22 -5.15 16 4 S 2.61 27.94 5.43 -107.50 -0.58 27.36 16 5 O -0.96 -12.79 18.08 -57.54 -1.04 -13.83 16 6 O -0.95 -12.28 16.85 -57.54 -0.97 -13.25 16 7 N -1.06 -11.53 5.60 32.40 0.18 -11.34 16 8 C 0.13 1.62 5.71 -83.82 -0.48 1.14 16 9 C -0.13 -1.44 9.20 -39.34 -0.36 -1.80 16 10 C -0.09 -0.92 10.03 -39.64 -0.40 -1.32 16 11 C -0.14 -1.50 9.96 -39.35 -0.39 -1.90 16 12 C 0.18 2.42 6.29 -83.72 -0.53 1.89 16 13 N -0.70 -9.42 5.34 -14.24 -0.08 -9.50 16 14 C 0.69 12.93 8.41 -86.92 -0.73 12.20 16 15 O -0.58 -13.10 13.79 5.29 0.07 -13.02 16 16 N -0.72 -14.12 5.55 -66.42 -0.37 -14.48 16 17 C 0.27 6.71 5.43 -5.19 -0.03 6.68 16 18 C -0.54 -14.16 9.28 -34.44 -0.32 -14.48 16 19 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.88 -25.31 13.29 55.43 0.74 -24.58 16 22 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.12 -1.68 8.60 -39.20 -0.34 -2.01 16 27 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.13 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.43 4.16 8.92 -34.47 -0.31 3.85 16 35 H 0.13 1.42 7.73 -52.49 -0.41 1.02 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 38 H 0.40 4.01 8.84 -40.82 -0.36 3.65 16 39 H 0.39 6.37 8.34 -40.82 -0.34 6.03 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.15 2.38 6.25 -52.49 -0.33 2.06 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -35.44 380.36 -10.50 -45.94 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.93 Total: 10.63 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.24 Total: -4.86 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.47 Total: -59.91 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.94 Total: -40.10 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 27.94 SS G_CDS: -0.58 Total: 27.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.44 -10.50 -45.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488538124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.925 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds