Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 S 1.81398 * 109.47172 * 179.97438 * 3 2 1 5 5 O 1.42097 * 110.54688 * 63.38946 * 4 3 2 6 6 O 1.42106 * 110.54420 * 286.64138 * 4 3 2 7 7 N 1.65604 * 104.45016 * 175.01645 * 4 3 2 8 8 C 1.39664 * 119.99867 * 63.49770 * 7 4 3 9 9 C 1.38987 * 120.04007 * 74.14861 * 8 7 4 10 10 C 1.38131 * 120.06744 * 180.02562 * 9 8 7 11 11 C 1.38186 * 120.13934 * 0.02562 * 10 9 8 12 12 C 1.38906 * 120.08334 * 359.97438 * 11 10 9 13 13 N 1.39933 * 120.03701 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00247 * 144.67380 * 13 12 11 15 15 O 1.21582 * 119.99777 * 4.65178 * 14 13 12 16 16 N 1.34775 * 120.00259 * 184.64372 * 14 13 12 17 17 C 1.46497 * 120.00109 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47179 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99865 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99982 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99870 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47282 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47116 * 120.00122 * 22 20 18 25 25 H 1.48503 * 109.47364 * 239.99989 * 22 20 18 26 26 C 1.38759 * 119.92930 * 359.97438 * 12 11 10 27 27 H 1.09010 * 109.46954 * 59.99922 * 1 2 3 28 28 H 1.08993 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47500 * 300.00208 * 1 2 3 30 30 H 1.09005 * 109.46967 * 240.00001 * 2 1 3 31 31 H 1.08997 * 109.47044 * 119.99820 * 2 1 3 32 32 H 1.09005 * 109.47175 * 60.00129 * 3 2 1 33 33 H 1.08997 * 109.46991 * 299.99852 * 3 2 1 34 34 H 0.96995 * 119.99668 * 243.49283 * 7 4 3 35 35 H 1.07996 * 119.97081 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.93115 * 179.97438 * 10 9 8 37 37 H 1.08005 * 119.96021 * 179.97438 * 11 10 9 38 38 H 0.96998 * 119.99943 * 324.67860 * 13 12 11 39 39 H 0.97003 * 119.99990 * 359.97438 * 16 14 13 40 40 H 1.08995 * 109.47500 * 300.00248 * 17 16 14 41 41 H 1.09003 * 109.47288 * 60.00349 * 17 16 14 42 42 H 0.97003 * 119.99480 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.06546 * 179.72346 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3532 0.8463 -1.1886 6 8 4.3521 1.0616 1.2760 7 7 4.2673 3.0401 -0.1386 8 6 3.9184 3.9421 0.8690 9 6 4.6053 3.9353 2.0773 10 6 4.2605 4.8268 3.0744 11 6 3.2317 5.7275 2.8745 12 6 2.5411 5.7395 1.6693 13 7 1.4998 6.6523 1.4677 14 6 1.3014 7.1897 0.2477 15 8 1.9720 6.8189 -0.6962 16 7 0.3597 8.1380 0.0741 17 6 0.1437 8.7218 -1.2521 18 6 -0.9563 9.7491 -1.1757 19 1 -1.4453 9.9476 -0.2334 20 6 -1.3377 10.4362 -2.3085 21 7 -0.7418 10.1948 -3.4559 22 14 -2.7007 11.7101 -2.2137 23 1 -3.2040 11.7936 -0.8190 24 1 -2.1707 13.0339 -2.6282 25 1 -3.8105 11.3159 -3.1182 26 6 2.8856 4.8460 0.6651 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 4.7516 3.3493 -0.9200 35 1 5.4096 3.2324 2.2367 36 1 4.7954 4.8194 4.0125 37 1 2.9641 6.4230 3.6563 38 1 0.9208 6.8983 2.2060 39 1 -0.1757 8.4336 0.8271 40 1 1.0628 9.1978 -1.5936 41 1 -0.1409 7.9367 -1.9527 42 1 -1.0105 10.6781 -4.2529 43 1 2.3472 4.8504 -0.2712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488538124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -108.557662 kcal Electronic energy + Delta-G solvation = -27098.873739 eV Core-core repulsion = 23076.864838 eV Total energy + Delta-G solvation = -4022.008901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64124 -39.97688 -38.26144 -37.17559 -36.79836 -36.10107 -35.85155 -34.98502 -34.30766 -30.99814 -30.01696 -28.84836 -28.66275 -25.09012 -23.77170 -23.26849 -22.91408 -21.84556 -20.50500 -19.88639 -19.26027 -18.82280 -18.03852 -17.55501 -17.34878 -17.20024 -16.76048 -16.64741 -16.36130 -15.91875 -15.78755 -15.42367 -15.00037 -14.55887 -14.52756 -14.18746 -14.03752 -13.92519 -13.68707 -13.53975 -13.34487 -13.30273 -13.22275 -12.87240 -12.86338 -12.76093 -12.57057 -12.37387 -12.21203 -11.88642 -11.77308 -11.44732 -11.41115 -11.24636 -10.86377 -10.81325 -9.92838 -9.73433 -9.05232 -8.28850 -6.44736 -0.90034 0.23900 0.39310 1.44362 1.45284 1.52843 1.58306 1.74433 2.10610 2.39003 2.62137 2.78633 3.07017 3.12668 3.41148 3.50912 3.75150 4.04670 4.06649 4.14543 4.27336 4.31439 4.37693 4.51750 4.62943 4.64876 4.68509 5.00488 5.03191 5.03384 5.11214 5.26352 5.28543 5.32156 5.39862 5.45808 5.48785 5.54281 5.67188 5.83085 5.84104 6.14246 6.19436 6.66851 7.18336 7.26053 7.60701 8.83373 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002528 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.231723 B =11071.566797 C =12049.138249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.615 4.615 4 S 2.618 3.382 5 O -0.987 6.987 6 O -0.972 6.972 7 N -1.063 6.063 8 C 0.128 3.872 9 C -0.132 4.132 10 C -0.084 4.084 11 C -0.129 4.129 12 C 0.158 3.842 13 N -0.672 5.672 14 C 0.690 3.310 15 O -0.625 6.625 16 N -0.715 5.715 17 C 0.285 3.715 18 C -0.553 4.553 19 H 0.085 0.915 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.984 3.016 23 H -0.252 1.252 24 H -0.281 1.281 25 H -0.280 1.280 26 C -0.140 4.140 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.428 0.572 35 H 0.139 0.861 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.425 0.575 39 H 0.408 0.592 40 H -0.012 1.012 41 H -0.010 1.010 42 H 0.268 0.732 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -16.095 16.406 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.747 4.747 4 S 2.716 3.284 5 O -0.977 6.977 6 O -0.962 6.962 7 N -0.817 5.817 8 C 0.033 3.967 9 C -0.154 4.154 10 C -0.103 4.103 11 C -0.150 4.150 12 C 0.062 3.938 13 N -0.322 5.322 14 C 0.390 3.610 15 O -0.506 6.506 16 N -0.368 5.368 17 C 0.162 3.838 18 C -0.591 4.591 19 H 0.103 0.897 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.807 3.193 23 H -0.175 1.175 24 H -0.207 1.207 25 H -0.206 1.206 26 C -0.164 4.164 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.266 0.734 35 H 0.157 0.843 36 H 0.185 0.815 37 H 0.179 0.821 38 H 0.264 0.736 39 H 0.243 0.757 40 H 0.006 0.994 41 H 0.007 0.993 42 H 0.077 0.923 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.655 -17.095 15.504 23.761 hybrid contribution -1.314 1.511 -0.720 2.128 sum 4.342 -15.584 14.784 21.915 Atomic orbital electron populations 1.21753 0.92954 1.03207 1.02705 1.21424 0.99601 0.91047 1.04309 1.30508 1.23642 1.07261 1.13335 1.04792 0.78496 0.71825 0.73278 1.93567 1.79481 1.75250 1.49414 1.93560 1.78323 1.81102 1.43200 1.53038 1.71701 1.26600 1.30390 1.17134 0.96251 0.93878 0.89470 1.21708 1.00058 1.00443 0.93185 1.21237 0.96077 0.93269 0.99714 1.21343 0.95783 1.01144 0.96698 1.17629 0.90667 0.89873 0.95621 1.42401 1.33819 1.45144 1.10800 1.16285 0.81153 0.80167 0.83374 1.90861 1.51891 1.66194 1.41607 1.45316 1.37848 1.40078 1.13574 1.18453 0.94965 0.91656 0.78734 1.21623 1.19246 1.21629 0.96580 0.89686 1.26026 0.99522 0.99467 0.94510 1.70144 1.43192 1.42920 1.00617 0.85128 0.77622 0.77453 0.79100 1.17548 1.20663 1.20602 1.21529 0.99184 0.95224 1.00415 0.92444 0.90578 0.91825 0.89883 0.89398 0.83569 0.83938 0.73358 0.84317 0.81470 0.82089 0.73585 0.75665 0.99425 0.99250 0.92289 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.12 -1.85 5.94 30.59 0.18 -1.67 16 3 C -0.62 -10.37 5.99 71.98 0.43 -9.93 16 4 S 2.62 56.89 5.43 -56.49 -0.31 56.59 16 5 O -0.99 -27.20 18.08 -127.65 -2.31 -29.51 16 6 O -0.97 -24.83 16.85 -127.65 -2.15 -26.98 16 7 N -1.06 -23.78 5.60 -51.42 -0.29 -24.06 16 8 C 0.13 3.08 5.71 38.20 0.22 3.30 16 9 C -0.13 -2.74 9.20 22.42 0.21 -2.53 16 10 C -0.08 -1.34 10.03 22.23 0.22 -1.12 16 11 C -0.13 -2.23 9.96 22.42 0.22 -2.01 16 12 C 0.16 3.94 6.29 38.13 0.24 4.18 16 13 N -0.67 -17.35 5.34 -317.24 -1.69 -19.04 16 14 C 0.69 26.20 8.41 179.05 1.51 27.70 16 15 O -0.62 -29.44 13.79 -3.98 -0.05 -29.49 16 16 N -0.71 -28.22 5.55 -482.31 -2.68 -30.90 16 17 C 0.29 14.98 5.43 85.63 0.46 15.44 16 18 C -0.55 -28.81 9.28 25.60 0.24 -28.57 16 19 H 0.09 3.97 7.60 -2.91 -0.02 3.95 16 20 C 0.00 0.24 5.46 84.65 0.46 0.70 16 21 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 22 Si 0.98 41.03 29.54 68.60 2.03 43.05 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 26 C -0.14 -3.94 8.60 22.52 0.19 -3.74 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.43 8.94 8.92 -96.75 -0.86 8.07 16 35 H 0.14 2.72 7.73 -2.91 -0.02 2.70 16 36 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.43 7.33 8.84 -92.71 -0.82 6.51 16 39 H 0.41 12.82 8.34 -92.71 -0.77 12.05 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.12 4.13 6.25 -2.91 -0.02 4.11 16 Total: -1.00 -79.56 380.36 -3.26 -82.82 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -1.39 Total: 31.48 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.30 Total: 0.50 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -4.38 Total: -128.46 kcal Atomic # 8 Polarization: -81.47 SS G_CDS: -4.51 Total: -85.98 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 56.89 SS G_CDS: -0.31 Total: 56.59 kcal Total: -79.56 -3.26 -82.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488538124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.737 kcal (2) G-P(sol) polarization free energy of solvation -79.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds