Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21292 * 120.00074 * 2 1 4 4 N 1.34774 * 119.99849 * 179.97438 * 2 1 3 5 5 C 1.40136 * 120.00191 * 185.63380 * 4 2 1 6 6 C 1.39110 * 119.92137 * 214.59571 * 5 4 2 7 7 C 1.37997 * 120.32421 * 179.97438 * 6 5 4 8 8 C 1.38691 * 120.16323 * 359.97438 * 7 6 5 9 9 O 1.35719 * 120.07918 * 179.97438 * 8 7 6 10 10 C 1.40128 * 119.84066 * 0.02562 * 8 7 6 11 11 C 1.47508 * 120.15722 * 179.97438 * 10 8 7 12 12 O 1.21584 * 120.00420 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99711 * 179.97438 * 11 10 8 14 14 C 1.39379 * 119.99895 * 174.76127 * 13 11 10 15 15 C 1.38625 * 119.58212 * 174.79802 * 14 13 11 16 16 C 1.40798 * 118.79385 * 179.97438 * 15 14 13 17 17 C 1.41548 * 120.99434 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99861 * 214.15118 * 17 16 15 19 19 C 1.40028 * 119.99843 * 34.16168 * 17 16 15 20 20 N 1.30742 * 120.00293 * 5.42682 * 19 17 16 21 21 Si 1.86806 * 119.99992 * 185.43054 * 19 17 16 22 22 H 1.48504 * 109.46847 * 59.99387 * 21 19 17 23 23 H 1.48498 * 109.47122 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46995 * 299.99818 * 21 19 17 25 25 C 1.41181 * 118.01483 * 359.97438 * 16 15 14 26 26 C 1.37593 * 119.01351 * 0.02778 * 25 16 15 27 27 N 1.32089 * 121.11254 * 359.97039 * 26 25 16 28 28 C 1.38386 * 119.92075 * 34.84292 * 5 4 2 29 29 H 1.09003 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47579 * 300.00607 * 1 2 3 31 31 H 1.09006 * 109.46514 * 60.01033 * 1 2 3 32 32 H 0.97001 * 120.00502 * 5.63575 * 4 2 1 33 33 H 1.07995 * 119.83628 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.91497 * 179.97438 * 7 6 5 35 35 H 0.96699 * 114.00237 * 270.02685 * 9 8 7 36 36 H 0.97001 * 119.99729 * 354.76335 * 13 11 10 37 37 H 1.07999 * 120.60320 * 0.02562 * 15 14 13 38 38 H 0.96996 * 120.00165 * 180.02562 * 20 19 17 39 39 H 1.07992 * 120.49739 * 179.97438 * 25 16 15 40 40 H 1.07996 * 119.44504 * 179.97438 * 26 25 16 41 41 H 1.08006 * 120.08263 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5772 -1.1702 0.1197 6 6 4.3288 -2.1296 -0.5509 7 6 5.7042 -2.1399 -0.4399 8 6 6.3474 -1.1919 0.3418 9 8 7.7002 -1.2039 0.4502 10 6 5.5970 -0.2222 1.0203 11 6 6.2738 0.7890 1.8541 12 8 7.4856 0.7829 1.9535 13 7 5.5490 1.7205 2.5048 14 6 6.1766 2.6072 3.3780 15 6 5.4430 3.6297 3.9594 16 6 6.0936 4.5156 4.8394 17 6 5.3896 5.5762 5.4584 18 1 5.8878 6.5146 5.6518 19 6 4.0473 5.4084 5.8202 20 7 3.4745 4.2410 5.6842 21 14 3.0749 6.8527 6.4970 22 1 3.0414 7.9427 5.4890 23 1 1.6881 6.4170 6.8006 24 1 3.7221 7.3467 7.7389 25 6 7.4691 4.3144 5.0859 26 6 8.1133 3.2710 4.4620 27 7 7.4665 2.4616 3.6426 28 6 4.2047 -0.2217 0.9082 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3632 0.5137 -0.8902 32 1 1.6994 -2.0053 -0.0816 33 1 3.8334 -2.8701 -1.1613 34 1 6.2812 -2.8881 -0.9630 35 1 8.0314 -1.7434 1.1812 36 1 4.5905 1.7737 2.3654 37 1 4.3913 3.7442 3.7419 38 1 2.5446 4.1250 5.9344 39 1 8.0078 4.9703 5.7536 40 1 9.1655 3.1110 4.6452 41 1 3.6196 0.5199 1.4318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532437872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -39.111347 kcal Electronic energy + Delta-G solvation = -28588.667412 eV Core-core repulsion = 24434.225978 eV Total energy + Delta-G solvation = -4154.441434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.89816 -39.79511 -38.80194 -37.43731 -36.82918 -34.48340 -34.21171 -33.64671 -31.48932 -30.75700 -30.46714 -28.44939 -28.06957 -25.92772 -24.30849 -23.06785 -21.94968 -21.55125 -20.67449 -19.85647 -18.49377 -18.16802 -17.59063 -17.18729 -16.29077 -16.11964 -15.64308 -15.40663 -15.17469 -14.89520 -14.53791 -14.35748 -14.18954 -13.94555 -13.91945 -13.44514 -13.09005 -12.98221 -12.80784 -12.67672 -12.55540 -12.37700 -12.31264 -12.05172 -11.39474 -11.18420 -10.88350 -10.73515 -10.45845 -10.26652 -10.14182 -10.13489 -9.66773 -9.32595 -9.31969 -9.13376 -8.20077 -7.88955 -7.71409 -6.99837 -6.69025 -4.58029 0.72136 1.05037 2.27007 2.64354 2.74696 2.85294 3.05158 3.08546 3.17659 3.31754 3.62408 3.91528 3.95171 4.23867 4.38987 4.66244 4.67524 4.76186 4.79088 5.05765 5.08455 5.19671 5.27805 5.47036 5.63190 5.67488 5.82055 5.95515 6.00150 6.09542 6.24300 6.60513 6.61059 6.68286 6.81463 6.99283 7.04754 7.16055 7.39262 7.48971 7.75655 7.81399 7.83663 7.98461 8.24036 8.45458 8.73933 8.81096 8.90651 9.67714 10.20757 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003610 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.901407 B = 7753.810812 C =10373.645581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.506 3.494 3 O -0.518 6.518 4 N -0.675 5.675 5 C 0.124 3.876 6 C -0.109 4.109 7 C -0.137 4.137 8 C 0.153 3.847 9 O -0.475 6.475 10 C -0.135 4.135 11 C 0.541 3.459 12 O -0.461 6.461 13 N -0.653 5.653 14 C 0.336 3.664 15 C -0.227 4.227 16 C 0.148 3.852 17 C -0.464 4.464 18 H 0.081 0.919 19 C 0.077 3.923 20 N -0.804 5.804 21 Si 0.915 3.085 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.276 4.276 26 C 0.116 3.884 27 N -0.548 5.548 28 C -0.074 4.074 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.411 0.589 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.394 0.606 36 H 0.408 0.592 37 H 0.126 0.874 38 H 0.280 0.720 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 -15.338 -10.445 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.295 3.705 3 O -0.392 6.392 4 N -0.322 5.322 5 C 0.031 3.969 6 C -0.129 4.129 7 C -0.156 4.156 8 C 0.106 3.894 9 O -0.286 6.286 10 C -0.140 4.140 11 C 0.326 3.674 12 O -0.331 6.331 13 N -0.300 5.300 14 C 0.112 3.888 15 C -0.252 4.252 16 C 0.139 3.861 17 C -0.496 4.496 18 H 0.099 0.901 19 C -0.141 4.141 20 N -0.431 5.431 21 Si 0.740 3.260 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.300 4.300 26 C -0.039 4.039 27 N -0.267 5.267 28 C -0.095 4.095 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.247 0.753 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.252 0.748 36 H 0.244 0.756 37 H 0.144 0.856 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.463 -15.056 -11.236 20.214 hybrid contribution -1.879 0.547 1.060 2.226 sum -9.342 -14.508 -10.176 20.033 Atomic orbital electron populations 1.21859 0.90508 1.04466 1.05996 1.21098 0.91027 0.83162 0.75245 1.90823 1.70354 1.31055 1.47009 1.43701 1.04975 1.09984 1.73551 1.17541 0.83057 0.98223 0.98104 1.20843 0.93454 0.99584 0.99046 1.21187 0.93943 0.99289 1.01216 1.18451 0.83681 0.92602 0.94701 1.84776 1.15452 1.73613 1.54737 1.20560 0.93206 0.99158 1.01032 1.18017 0.87413 0.81545 0.80383 1.90873 1.12219 1.70953 1.59029 1.43370 1.11292 1.32353 1.42962 1.18165 0.90014 0.89498 0.91162 1.21584 1.01089 0.99262 1.03296 1.17575 0.90476 0.90869 0.87134 1.19478 0.95153 0.99774 1.35239 0.90112 1.25882 0.97653 0.96554 0.93973 1.69724 1.13246 1.23001 1.37121 0.86261 0.78330 0.81436 0.80021 1.18856 1.20355 1.18986 1.22022 0.97108 1.03078 1.07794 1.21790 0.97891 0.91489 0.92710 1.67195 1.07540 1.31072 1.20909 1.21250 0.93165 0.98571 0.96514 0.90386 0.87994 0.88343 0.75288 0.84976 0.84350 0.74780 0.75611 0.85648 0.90895 0.87797 0.85726 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.39 36.01 0.37 -0.55 16 2 C 0.51 5.12 7.66 -10.99 -0.08 5.04 16 3 O -0.52 -7.99 14.90 5.55 0.08 -7.91 16 4 N -0.68 -5.53 5.34 -9.87 -0.05 -5.59 16 5 C 0.12 1.40 6.25 -83.68 -0.52 0.88 16 6 C -0.11 -1.00 9.95 -39.35 -0.39 -1.39 16 7 C -0.14 -1.45 9.97 -39.50 -0.39 -1.84 16 8 C 0.15 2.20 6.72 -38.71 -0.26 1.94 16 9 O -0.48 -7.11 11.56 -40.79 -0.47 -7.58 16 10 C -0.13 -2.25 5.88 -104.87 -0.62 -2.86 16 11 C 0.54 11.44 7.71 -12.48 -0.10 11.35 16 12 O -0.46 -11.11 13.44 -16.63 -0.22 -11.33 16 13 N -0.65 -14.30 5.33 -12.45 -0.07 -14.37 16 14 C 0.34 8.63 7.40 -154.77 -1.15 7.48 16 15 C -0.23 -6.03 8.56 -38.47 -0.33 -6.36 16 16 C 0.15 4.01 5.52 -106.55 -0.59 3.42 16 17 C -0.46 -12.30 9.11 -37.65 -0.34 -12.64 16 18 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 19 C 0.08 1.91 5.34 -17.34 -0.09 1.82 16 20 N -0.80 -20.59 11.02 55.55 0.61 -19.98 16 21 Si 0.92 18.62 29.56 -169.99 -5.03 13.59 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 25 C -0.28 -6.95 9.90 -38.70 -0.38 -7.34 16 26 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16 27 N -0.55 -14.48 7.88 -12.54 -0.10 -14.58 16 28 C -0.07 -1.09 8.13 -38.99 -0.32 -1.40 16 29 H 0.08 0.18 7.92 -51.93 -0.41 -0.23 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.41 1.64 8.67 -40.82 -0.35 1.28 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.39 4.36 9.06 45.56 0.41 4.78 16 36 H 0.41 7.96 6.74 -40.82 -0.28 7.69 16 37 H 0.13 3.35 6.57 -52.49 -0.34 3.00 16 38 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 39 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 40 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 41 H 0.14 2.20 4.89 -52.48 -0.26 1.94 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -36.86 358.49 -8.54 -45.40 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -3.31 Total: 16.76 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -5.39 Total: 0.17 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.39 Total: -54.51 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.61 Total: -26.82 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.86 -8.54 -45.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532437872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.287 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds