Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21292 * 120.00074 * 2 1 4 4 N 1.34774 * 119.99849 * 179.97438 * 2 1 3 5 5 C 1.40136 * 120.00191 * 185.63380 * 4 2 1 6 6 C 1.39110 * 119.92137 * 214.59571 * 5 4 2 7 7 C 1.37997 * 120.32421 * 179.97438 * 6 5 4 8 8 C 1.38691 * 120.16323 * 359.97438 * 7 6 5 9 9 O 1.35719 * 120.07918 * 179.97438 * 8 7 6 10 10 C 1.40128 * 119.84066 * 0.02562 * 8 7 6 11 11 C 1.47508 * 120.15722 * 179.97438 * 10 8 7 12 12 O 1.21584 * 120.00420 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99711 * 179.97438 * 11 10 8 14 14 C 1.39379 * 119.99895 * 174.76127 * 13 11 10 15 15 C 1.38625 * 119.58212 * 174.79802 * 14 13 11 16 16 C 1.40798 * 118.79385 * 179.97438 * 15 14 13 17 17 C 1.41548 * 120.99434 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99861 * 214.15118 * 17 16 15 19 19 C 1.40028 * 119.99843 * 34.16168 * 17 16 15 20 20 N 1.30742 * 120.00293 * 5.42682 * 19 17 16 21 21 Si 1.86806 * 119.99992 * 185.43054 * 19 17 16 22 22 H 1.48504 * 109.46847 * 59.99387 * 21 19 17 23 23 H 1.48498 * 109.47122 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46995 * 299.99818 * 21 19 17 25 25 C 1.41181 * 118.01483 * 359.97438 * 16 15 14 26 26 C 1.37593 * 119.01351 * 0.02778 * 25 16 15 27 27 N 1.32089 * 121.11254 * 359.97039 * 26 25 16 28 28 C 1.38386 * 119.92075 * 34.84292 * 5 4 2 29 29 H 1.09003 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47579 * 300.00607 * 1 2 3 31 31 H 1.09006 * 109.46514 * 60.01033 * 1 2 3 32 32 H 0.97001 * 120.00502 * 5.63575 * 4 2 1 33 33 H 1.07995 * 119.83628 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.91497 * 179.97438 * 7 6 5 35 35 H 0.96699 * 114.00237 * 270.02685 * 9 8 7 36 36 H 0.97001 * 119.99729 * 354.76335 * 13 11 10 37 37 H 1.07999 * 120.60320 * 0.02562 * 15 14 13 38 38 H 0.96996 * 120.00165 * 180.02562 * 20 19 17 39 39 H 1.07992 * 120.49739 * 179.97438 * 25 16 15 40 40 H 1.07996 * 119.44504 * 179.97438 * 26 25 16 41 41 H 1.08006 * 120.08263 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5772 -1.1702 0.1197 6 6 4.3288 -2.1296 -0.5509 7 6 5.7042 -2.1399 -0.4399 8 6 6.3474 -1.1919 0.3418 9 8 7.7002 -1.2039 0.4502 10 6 5.5970 -0.2222 1.0203 11 6 6.2738 0.7890 1.8541 12 8 7.4856 0.7829 1.9535 13 7 5.5490 1.7205 2.5048 14 6 6.1766 2.6072 3.3780 15 6 5.4430 3.6297 3.9594 16 6 6.0936 4.5156 4.8394 17 6 5.3896 5.5762 5.4584 18 1 5.8878 6.5146 5.6518 19 6 4.0473 5.4084 5.8202 20 7 3.4745 4.2410 5.6842 21 14 3.0749 6.8527 6.4970 22 1 3.0414 7.9427 5.4890 23 1 1.6881 6.4170 6.8006 24 1 3.7221 7.3467 7.7389 25 6 7.4691 4.3144 5.0859 26 6 8.1133 3.2710 4.4620 27 7 7.4665 2.4616 3.6426 28 6 4.2047 -0.2217 0.9082 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3632 0.5137 -0.8902 32 1 1.6994 -2.0053 -0.0816 33 1 3.8334 -2.8701 -1.1613 34 1 6.2812 -2.8881 -0.9630 35 1 8.0314 -1.7434 1.1812 36 1 4.5905 1.7737 2.3654 37 1 4.3913 3.7442 3.7419 38 1 2.5446 4.1250 5.9344 39 1 8.0078 4.9703 5.7536 40 1 9.1655 3.1110 4.6452 41 1 3.6196 0.5199 1.4318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532437872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = -66.036910 kcal Electronic energy + Delta-G solvation = -28589.834992 eV Core-core repulsion = 24434.225978 eV Total energy + Delta-G solvation = -4155.609014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.97034 -41.14527 -40.23123 -39.08808 -37.86133 -36.11095 -35.61304 -35.27229 -32.73926 -32.37911 -31.44566 -30.25656 -28.89925 -27.92972 -25.58099 -24.13516 -23.90197 -23.02511 -21.57817 -21.48020 -19.78037 -19.44785 -19.19625 -18.11111 -17.69646 -17.42052 -16.94816 -16.82976 -16.50449 -16.14779 -16.06088 -15.92894 -15.77233 -15.51575 -14.98038 -14.81082 -14.41342 -14.38009 -14.28980 -13.88761 -13.70216 -13.40498 -13.24741 -13.11148 -12.95513 -12.88590 -12.71480 -12.22188 -11.94290 -11.83669 -11.54128 -11.39135 -11.19350 -11.07771 -10.91856 -10.16105 -9.92521 -9.68854 -9.13996 -8.92832 -8.60520 -6.61730 -0.36540 0.08196 0.74081 0.96167 1.38787 1.46687 1.51009 1.54591 1.93543 1.98533 2.08689 2.20074 2.63883 2.83177 3.23339 3.41085 3.65131 3.70423 3.85376 4.02928 4.18419 4.24526 4.38703 4.50637 4.63401 4.65572 4.70487 4.75488 4.85297 4.89076 4.98965 5.03144 5.14001 5.19534 5.24138 5.26981 5.40786 5.56752 5.73963 5.88463 6.06185 6.38596 6.41668 6.49225 6.74577 6.80306 6.81561 7.12857 7.17296 7.71650 8.32057 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003610 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.901407 B = 7753.810812 C =10373.645581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.499 3.501 3 O -0.581 6.581 4 N -0.656 5.656 5 C 0.122 3.878 6 C -0.078 4.078 7 C -0.124 4.124 8 C 0.141 3.859 9 O -0.494 6.494 10 C -0.168 4.168 11 C 0.537 3.463 12 O -0.500 6.500 13 N -0.653 5.653 14 C 0.331 3.669 15 C -0.247 4.247 16 C 0.121 3.879 17 C -0.494 4.494 18 H 0.086 0.914 19 C 0.035 3.965 20 N -0.830 5.830 21 Si 0.992 3.008 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.288 4.288 26 C 0.112 3.888 27 N -0.571 5.571 28 C -0.088 4.088 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.435 0.565 33 H 0.186 0.814 34 H 0.175 0.825 35 H 0.406 0.594 36 H 0.414 0.586 37 H 0.114 0.886 38 H 0.289 0.711 39 H 0.123 0.877 40 H 0.157 0.843 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 -17.478 -11.670 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.290 3.710 3 O -0.460 6.460 4 N -0.305 5.305 5 C 0.028 3.972 6 C -0.098 4.098 7 C -0.143 4.143 8 C 0.094 3.906 9 O -0.307 6.307 10 C -0.172 4.172 11 C 0.325 3.675 12 O -0.373 6.373 13 N -0.300 5.300 14 C 0.106 3.894 15 C -0.273 4.273 16 C 0.112 3.888 17 C -0.525 4.525 18 H 0.104 0.896 19 C -0.180 4.180 20 N -0.457 5.457 21 Si 0.812 3.188 22 H -0.184 1.184 23 H -0.191 1.191 24 H -0.182 1.182 25 C -0.311 4.311 26 C -0.042 4.042 27 N -0.291 5.291 28 C -0.109 4.109 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.276 0.724 33 H 0.203 0.797 34 H 0.193 0.807 35 H 0.266 0.734 36 H 0.252 0.748 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.174 0.826 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.686 -17.276 -12.474 23.407 hybrid contribution -1.239 1.081 1.374 2.143 sum -10.925 -16.195 -11.100 22.469 Atomic orbital electron populations 1.21902 0.86657 1.07241 1.06141 1.22026 0.92861 0.82547 0.73605 1.90811 1.71872 1.33397 1.49889 1.43618 1.03769 1.10836 1.72273 1.17698 0.84707 0.97589 0.97247 1.21394 0.92793 0.98658 0.96965 1.21546 0.94748 0.98396 0.99581 1.18777 0.83423 0.93089 0.95351 1.84724 1.16174 1.74421 1.55397 1.20268 0.94164 0.99753 1.03033 1.18797 0.87245 0.81571 0.79881 1.90818 1.13795 1.72084 1.60606 1.43457 1.11718 1.32222 1.42598 1.18419 0.90026 0.89738 0.91254 1.21522 1.00680 1.00498 1.04574 1.18006 0.91693 0.91537 0.87537 1.19811 0.96566 0.99967 1.36191 0.89564 1.26841 0.98047 0.99453 0.93681 1.69796 1.13982 1.24963 1.36931 0.85103 0.76952 0.77394 0.79338 1.18430 1.19081 1.18165 1.22230 0.96695 1.03754 1.08446 1.22323 0.99256 0.90843 0.91755 1.67329 1.07879 1.31949 1.21901 1.21127 0.92315 0.99629 0.97877 0.86320 0.88298 0.87572 0.72356 0.79678 0.80730 0.73410 0.74827 0.86784 0.90007 0.85931 0.82597 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.39 71.24 0.74 -0.63 16 2 C 0.50 9.51 7.66 87.66 0.67 10.18 16 3 O -0.58 -18.56 14.90 -3.07 -0.05 -18.61 16 4 N -0.66 -8.91 5.34 -303.52 -1.62 -10.53 16 5 C 0.12 2.49 6.25 38.06 0.24 2.72 16 6 C -0.08 -1.08 9.95 22.42 0.22 -0.86 16 7 C -0.12 -2.19 9.97 22.32 0.22 -1.96 16 8 C 0.14 3.98 6.72 22.84 0.15 4.13 16 9 O -0.49 -14.96 11.56 -69.45 -0.80 -15.76 16 10 C -0.17 -5.81 5.88 -20.02 -0.12 -5.93 16 11 C 0.54 24.23 7.71 86.69 0.67 24.90 16 12 O -0.50 -25.54 13.44 16.98 0.23 -25.31 16 13 N -0.65 -30.86 5.33 -311.57 -1.66 -32.52 16 14 C 0.33 18.06 7.40 132.79 0.98 19.04 16 15 C -0.25 -13.94 8.56 22.99 0.20 -13.75 16 16 C 0.12 6.82 5.52 -21.11 -0.12 6.71 16 17 C -0.49 -26.90 9.11 23.52 0.21 -26.69 16 18 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 19 C 0.03 1.75 5.34 85.29 0.46 2.21 16 20 N -0.83 -43.62 11.02 21.84 0.24 -43.38 16 21 Si 0.99 38.06 29.56 68.60 2.03 40.09 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 25 C -0.29 -14.93 9.90 22.84 0.23 -14.70 16 26 C 0.11 5.69 11.15 84.50 0.94 6.63 16 27 N -0.57 -31.55 7.88 -193.57 -1.53 -33.07 16 28 C -0.09 -2.66 8.13 22.66 0.18 -2.48 16 29 H 0.12 0.02 7.92 -2.39 -0.02 0.00 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.44 1.46 8.67 -92.71 -0.80 0.65 16 33 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.41 9.27 9.06 -74.06 -0.67 8.60 16 36 H 0.41 17.86 6.74 -92.71 -0.63 17.24 16 37 H 0.11 6.54 6.57 -2.91 -0.02 6.52 16 38 H 0.29 13.71 8.29 -92.71 -0.77 12.94 16 39 H 0.12 5.72 8.06 -2.91 -0.02 5.69 16 40 H 0.16 6.70 8.06 -2.91 -0.02 6.67 16 41 H 0.12 4.04 4.89 -2.91 -0.01 4.03 16 Total: -1.00 -87.10 358.49 1.77 -85.33 By element: Atomic # 1 Polarization: 45.20 SS G_CDS: -0.96 Total: 44.24 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.88 Total: 9.53 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -4.57 Total: -119.50 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -0.62 Total: -59.68 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -87.10 1.77 -85.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532437872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.290 kcal (2) G-P(sol) polarization free energy of solvation -87.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds