Wall clock time and date at job start Sat Apr 11 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34232 * 116.99884 * 2 1 4 4 O 1.20821 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99875 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47348 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47422 * 180.02562 * 6 5 3 8 8 C 1.37098 * 119.99648 * 273.25634 * 7 6 5 9 9 H 1.08000 * 120.00298 * 51.77732 * 8 7 6 10 10 C 1.38958 * 119.99470 * 231.77340 * 8 7 6 11 11 N 1.31405 * 120.00340 * 18.56353 * 10 8 7 12 12 Si 1.86800 * 119.99755 * 198.56161 * 10 8 7 13 13 H 1.48501 * 109.46915 * 60.00007 * 12 10 8 14 14 H 1.48491 * 109.47285 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47242 * 300.00552 * 12 10 8 16 16 C 1.34773 * 120.00387 * 93.25082 * 7 6 5 17 17 O 1.21294 * 119.99767 * 5.32690 * 16 7 6 18 18 C 1.50700 * 120.00308 * 185.32300 * 16 7 6 19 19 H 1.09000 * 109.47118 * 307.15072 * 18 16 7 20 20 C 1.53003 * 109.47006 * 67.15080 * 18 16 7 21 21 C 1.50706 * 109.47273 * 187.14837 * 18 16 7 22 22 C 1.38229 * 119.98631 * 300.00167 * 21 18 16 23 23 C 1.38187 * 120.04881 * 179.97438 * 22 21 18 24 24 C 1.38488 * 120.02687 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.01387 * 179.97438 * 24 23 22 26 26 C 1.38400 * 119.97548 * 359.97438 * 24 23 22 27 27 C 1.38444 * 119.98486 * 119.99928 * 21 18 16 28 28 F 1.35101 * 120.01700 * 0.02562 * 27 21 18 29 29 H 1.08996 * 109.46965 * 59.99914 * 1 2 3 30 30 H 1.08995 * 109.46530 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46933 * 299.99667 * 1 2 3 32 32 H 1.09007 * 109.46983 * 60.00441 * 5 3 2 33 33 H 1.08999 * 109.47673 * 300.00737 * 5 3 2 34 34 H 1.08996 * 109.46822 * 59.99646 * 6 5 3 35 35 H 1.09007 * 109.46926 * 300.00431 * 6 5 3 36 36 H 0.96996 * 120.00182 * 179.97438 * 11 10 8 37 37 H 1.08999 * 109.46918 * 63.25547 * 20 18 16 38 38 H 1.08995 * 109.46890 * 183.25575 * 20 18 16 39 39 H 1.09003 * 109.46505 * 303.25483 * 20 18 16 40 40 H 1.07998 * 119.97345 * 0.27530 * 22 21 18 41 41 H 1.08002 * 119.98226 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.02896 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.1512 2.7869 1.1864 9 1 5.9611 1.9990 1.9002 10 6 7.0934 3.7683 1.4694 11 7 7.0785 4.9036 0.8080 12 14 8.3810 3.4737 2.7902 13 1 9.1969 2.2863 2.4300 14 1 9.2608 4.6650 2.8984 15 1 7.7087 3.2355 4.0927 16 6 6.1326 2.9206 -1.1642 17 8 5.5227 3.0460 -2.2051 18 6 7.6390 2.8787 -1.1739 19 1 8.0276 3.6189 -0.4745 20 6 8.1131 1.4849 -0.7572 21 6 8.1412 3.1861 -2.5612 22 6 7.7776 2.3783 -3.6224 23 6 8.2369 2.6594 -4.8950 24 6 9.0617 3.7511 -5.1088 25 9 9.5110 4.0253 -6.3530 26 6 9.4255 4.5612 -4.0473 27 6 8.9664 4.2775 -2.7723 28 9 9.3220 5.0666 -1.7349 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7806 -0.8892 33 1 3.9558 0.7809 0.8907 34 1 3.6101 3.2360 0.8910 35 1 3.6107 3.2365 -0.8889 36 1 7.7360 5.5888 1.0058 37 1 7.7729 0.7517 -1.4885 38 1 9.2019 1.4711 -0.7083 39 1 7.7022 1.2392 0.2220 40 1 7.1302 1.5298 -3.4574 41 1 7.9518 2.0277 -5.7234 42 1 10.0684 5.4131 -4.2130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329666291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:43 Heat of formation + Delta-G solvation = -182.505201 kcal Electronic energy + Delta-G solvation = -30510.778036 eV Core-core repulsion = 25899.429391 eV Total energy + Delta-G solvation = -4611.348645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.75594 -48.46692 -40.23450 -39.40115 -37.97876 -36.35065 -34.85832 -33.69435 -32.17279 -30.51677 -30.38598 -28.54385 -27.55840 -25.15977 -24.41276 -23.30232 -22.62653 -21.30729 -20.25039 -19.35911 -17.85868 -17.48565 -17.17164 -16.51755 -16.35357 -16.33991 -15.62213 -15.60320 -15.31541 -15.06387 -14.88463 -14.66207 -14.17629 -14.05554 -13.96582 -13.69424 -13.59017 -13.06696 -12.74155 -12.47067 -12.43152 -12.29010 -12.06516 -11.85918 -11.61919 -11.50209 -11.36988 -11.21573 -11.12578 -10.96120 -10.69855 -10.56874 -10.49481 -10.42084 -10.22973 -10.21568 -8.93607 -8.67426 -8.40097 -8.09590 -7.49923 -6.52661 -4.34745 1.34527 1.40708 2.48042 2.89404 3.06114 3.15192 3.16883 3.72726 3.93348 4.05698 4.22313 4.67562 4.79151 4.81721 4.96021 5.09299 5.12564 5.15583 5.18938 5.25228 5.49843 5.55977 5.57019 5.65957 5.99307 6.01008 6.03450 6.08258 6.13233 6.29958 6.38027 6.40823 6.49683 6.54184 6.57981 6.72104 6.84750 6.92417 7.07810 7.21543 7.30683 7.78607 7.99519 8.50309 8.79956 9.42774 9.86622 10.51931 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.004219 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.576440 B = 6634.321949 C = 8750.155178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.466 3.534 4 O -0.508 6.508 5 C -0.123 4.123 6 C 0.126 3.874 7 N -0.451 5.451 8 C -0.348 4.348 9 H 0.085 0.915 10 C 0.052 3.948 11 N -0.845 5.845 12 Si 0.901 3.099 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.270 1.270 16 C 0.527 3.473 17 O -0.600 6.600 18 C -0.078 4.078 19 H 0.138 0.862 20 C -0.133 4.133 21 C -0.088 4.088 22 C -0.029 4.029 23 C -0.170 4.170 24 C 0.111 3.889 25 F -0.141 7.141 26 C -0.201 4.201 27 C 0.135 3.865 28 F -0.125 7.125 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.276 0.724 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -8.144 -3.340 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.395 6.395 5 C -0.162 4.162 6 C 0.001 3.999 7 N -0.170 5.170 8 C -0.476 4.476 9 H 0.103 0.897 10 C -0.156 4.156 11 N -0.479 5.479 12 Si 0.726 3.274 13 H -0.189 1.189 14 H -0.206 1.206 15 H -0.195 1.195 16 C 0.317 3.683 17 O -0.485 6.485 18 C -0.098 4.098 19 H 0.155 0.845 20 C -0.191 4.191 21 C -0.090 4.090 22 C -0.047 4.047 23 C -0.189 4.189 24 C 0.092 3.908 25 F -0.120 7.120 26 C -0.220 4.220 27 C 0.115 3.885 28 F -0.103 7.103 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.123 -7.531 -3.843 8.456 hybrid contribution 0.526 0.472 0.699 0.994 sum 0.403 -7.059 -3.144 7.738 Atomic orbital electron populations 1.23189 0.77132 1.03179 1.02395 1.86538 1.22913 1.34237 1.84520 1.24059 0.92402 0.80945 0.71704 1.90653 1.67342 1.36301 1.45223 1.21874 0.85875 1.02844 1.05599 1.21109 0.84299 0.91289 1.03158 1.43143 1.02446 1.66065 1.05360 1.19162 1.20699 1.10502 0.97228 0.89728 1.25589 0.99346 0.93652 0.97061 1.69961 1.33628 1.03706 1.40649 0.86401 0.80996 0.78659 0.81319 1.18933 1.20554 1.19467 1.19949 0.88595 0.76845 0.82906 1.90530 1.70194 1.55055 1.32733 1.20469 0.94892 1.01577 0.92899 0.84458 1.21725 1.00118 0.94105 1.03143 1.19951 0.96935 0.94300 0.97803 1.20727 0.95162 0.98670 0.90179 1.21095 1.00714 0.98304 0.98797 1.17212 0.98138 0.96331 0.79111 1.91473 1.87767 1.93583 1.39176 1.20856 1.06684 1.03282 0.91198 1.17189 0.97353 0.90276 0.83677 1.91534 1.89920 1.72418 1.56406 0.92109 0.88509 0.92098 0.88028 0.87576 0.90710 0.90781 0.91313 0.93586 0.93303 0.89466 0.84270 0.84680 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.37 -5.22 10.57 -39.26 -0.41 -5.63 16 3 C 0.47 7.79 7.96 36.00 0.29 8.08 16 4 O -0.51 -9.84 15.73 -18.75 -0.29 -10.13 16 5 C -0.12 -2.07 6.13 -27.88 -0.17 -2.24 16 6 C 0.13 2.65 4.75 -4.04 -0.02 2.63 16 7 N -0.45 -10.31 2.43 -114.81 -0.28 -10.59 16 8 C -0.35 -7.92 7.01 -14.93 -0.10 -8.03 16 9 H 0.09 1.82 7.90 -52.49 -0.41 1.40 16 10 C 0.05 1.20 3.46 -17.47 -0.06 1.14 16 11 N -0.85 -21.41 11.47 55.50 0.64 -20.78 16 12 Si 0.90 18.05 29.59 -169.99 -5.03 13.02 16 13 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 C 0.53 12.39 6.22 -10.99 -0.07 12.32 16 17 O -0.60 -15.16 14.36 5.54 0.08 -15.08 16 18 C -0.08 -1.64 1.99 -92.92 -0.18 -1.83 16 19 H 0.14 3.19 3.48 -51.93 -0.18 3.01 16 20 C -0.13 -2.38 8.90 37.16 0.33 -2.05 16 21 C -0.09 -1.73 4.48 -104.55 -0.47 -2.20 16 22 C -0.03 -0.50 7.82 -39.60 -0.31 -0.81 16 23 C -0.17 -2.60 10.02 -39.51 -0.40 -2.99 16 24 C 0.11 1.75 7.30 -39.43 -0.29 1.46 16 25 F -0.14 -2.11 17.27 2.25 0.04 -2.07 16 26 C -0.20 -3.29 10.01 -39.44 -0.39 -3.68 16 27 C 0.13 2.56 7.24 -39.43 -0.29 2.28 16 28 F -0.12 -2.53 16.19 2.25 0.04 -2.49 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 33 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.07 1.61 8.02 -51.93 -0.42 1.20 16 35 H 0.07 1.71 7.22 -51.92 -0.37 1.34 16 36 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.05 0.73 7.28 -51.93 -0.38 0.35 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.60 6.30 -51.93 -0.33 1.27 16 40 H 0.14 2.30 7.32 -52.49 -0.38 1.91 16 41 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.14 1.99 8.06 -52.48 -0.42 1.56 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -28.65 363.55 -5.81 -34.46 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.99 Total: 8.32 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.07 Total: 5.50 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.36 Total: -31.37 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.63 Total: -30.85 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.08 Total: -4.57 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.65 -5.81 -34.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329666291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.049 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds