Wall clock time and date at job start Sat Apr 11 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34232 * 116.99884 * 2 1 4 4 O 1.20821 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99875 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47348 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47422 * 180.02562 * 6 5 3 8 8 C 1.37098 * 119.99648 * 273.25634 * 7 6 5 9 9 H 1.08000 * 120.00298 * 51.77732 * 8 7 6 10 10 C 1.38958 * 119.99470 * 231.77340 * 8 7 6 11 11 N 1.31405 * 120.00340 * 18.56353 * 10 8 7 12 12 Si 1.86800 * 119.99755 * 198.56161 * 10 8 7 13 13 H 1.48501 * 109.46915 * 60.00007 * 12 10 8 14 14 H 1.48491 * 109.47285 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47242 * 300.00552 * 12 10 8 16 16 C 1.34773 * 120.00387 * 93.25082 * 7 6 5 17 17 O 1.21294 * 119.99767 * 5.32690 * 16 7 6 18 18 C 1.50700 * 120.00308 * 185.32300 * 16 7 6 19 19 H 1.09000 * 109.47118 * 307.15072 * 18 16 7 20 20 C 1.53003 * 109.47006 * 67.15080 * 18 16 7 21 21 C 1.50706 * 109.47273 * 187.14837 * 18 16 7 22 22 C 1.38229 * 119.98631 * 300.00167 * 21 18 16 23 23 C 1.38187 * 120.04881 * 179.97438 * 22 21 18 24 24 C 1.38488 * 120.02687 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.01387 * 179.97438 * 24 23 22 26 26 C 1.38400 * 119.97548 * 359.97438 * 24 23 22 27 27 C 1.38444 * 119.98486 * 119.99928 * 21 18 16 28 28 F 1.35101 * 120.01700 * 0.02562 * 27 21 18 29 29 H 1.08996 * 109.46965 * 59.99914 * 1 2 3 30 30 H 1.08995 * 109.46530 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46933 * 299.99667 * 1 2 3 32 32 H 1.09007 * 109.46983 * 60.00441 * 5 3 2 33 33 H 1.08999 * 109.47673 * 300.00737 * 5 3 2 34 34 H 1.08996 * 109.46822 * 59.99646 * 6 5 3 35 35 H 1.09007 * 109.46926 * 300.00431 * 6 5 3 36 36 H 0.96996 * 120.00182 * 179.97438 * 11 10 8 37 37 H 1.08999 * 109.46918 * 63.25547 * 20 18 16 38 38 H 1.08995 * 109.46890 * 183.25575 * 20 18 16 39 39 H 1.09003 * 109.46505 * 303.25483 * 20 18 16 40 40 H 1.07998 * 119.97345 * 0.27530 * 22 21 18 41 41 H 1.08002 * 119.98226 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.02896 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.1512 2.7869 1.1864 9 1 5.9611 1.9990 1.9002 10 6 7.0934 3.7683 1.4694 11 7 7.0785 4.9036 0.8080 12 14 8.3810 3.4737 2.7902 13 1 9.1969 2.2863 2.4300 14 1 9.2608 4.6650 2.8984 15 1 7.7087 3.2355 4.0927 16 6 6.1326 2.9206 -1.1642 17 8 5.5227 3.0460 -2.2051 18 6 7.6390 2.8787 -1.1739 19 1 8.0276 3.6189 -0.4745 20 6 8.1131 1.4849 -0.7572 21 6 8.1412 3.1861 -2.5612 22 6 7.7776 2.3783 -3.6224 23 6 8.2369 2.6594 -4.8950 24 6 9.0617 3.7511 -5.1088 25 9 9.5110 4.0253 -6.3530 26 6 9.4255 4.5612 -4.0473 27 6 8.9664 4.2775 -2.7723 28 9 9.3220 5.0666 -1.7349 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7806 -0.8892 33 1 3.9558 0.7809 0.8907 34 1 3.6101 3.2360 0.8910 35 1 3.6107 3.2365 -0.8889 36 1 7.7360 5.5888 1.0058 37 1 7.7729 0.7517 -1.4885 38 1 9.2019 1.4711 -0.7083 39 1 7.7022 1.2392 0.2220 40 1 7.1302 1.5298 -3.4574 41 1 7.9518 2.0277 -5.7234 42 1 10.0684 5.4131 -4.2130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329666291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:42 Heat of formation + Delta-G solvation = -196.488488 kcal Electronic energy + Delta-G solvation = -30511.384397 eV Core-core repulsion = 25899.429391 eV Total energy + Delta-G solvation = -4611.955006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.98342 -49.94564 -41.57389 -40.97713 -39.44988 -37.63263 -36.63881 -35.24922 -33.80853 -32.07371 -31.72289 -29.90393 -28.63654 -26.90864 -25.89312 -24.74211 -23.98132 -22.74921 -21.62913 -21.07812 -19.19852 -18.89367 -18.67344 -17.97302 -17.68015 -17.61622 -17.12305 -16.94878 -16.76833 -16.65940 -16.30060 -16.20119 -15.71614 -15.53668 -15.37626 -15.04679 -14.89723 -14.46419 -14.28035 -13.91767 -13.82030 -13.68233 -13.43214 -13.27179 -13.04480 -12.97770 -12.79624 -12.78680 -12.59839 -12.45047 -12.17057 -12.02053 -11.96718 -11.84113 -11.76839 -11.59932 -10.69712 -10.14220 -9.97565 -9.51540 -9.29583 -8.31784 -6.18268 0.00251 0.08992 1.14940 1.47048 1.51812 1.59129 1.69816 2.15480 2.37470 2.41750 2.90661 3.03491 3.08493 3.48717 3.66730 3.75772 3.83490 3.94669 4.07151 4.18273 4.26511 4.33072 4.33953 4.49816 4.57953 4.58268 4.65500 4.71662 4.82854 4.85615 4.96175 5.04159 5.06866 5.08954 5.17043 5.24200 5.34720 5.47783 5.50910 5.59695 5.84667 6.00884 6.68479 6.72568 7.02112 7.62912 8.08082 8.73116 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.004219 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.576440 B = 6634.321949 C = 8750.155178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.541 6.541 5 C -0.109 4.109 6 C 0.127 3.873 7 N -0.458 5.458 8 C -0.350 4.350 9 H 0.100 0.900 10 C 0.018 3.982 11 N -0.884 5.884 12 Si 0.955 3.045 13 H -0.247 1.247 14 H -0.293 1.293 15 H -0.262 1.262 16 C 0.517 3.483 17 O -0.627 6.627 18 C -0.078 4.078 19 H 0.117 0.883 20 C -0.128 4.128 21 C -0.110 4.110 22 C -0.035 4.035 23 C -0.156 4.156 24 C 0.115 3.885 25 F -0.133 7.133 26 C -0.195 4.195 27 C 0.107 3.893 28 F -0.140 7.140 29 H 0.058 0.942 30 H 0.136 0.864 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.271 0.729 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.145 0.855 41 H 0.169 0.831 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -10.461 -3.735 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.431 6.431 5 C -0.148 4.148 6 C 0.003 3.997 7 N -0.177 5.177 8 C -0.477 4.477 9 H 0.118 0.882 10 C -0.186 4.186 11 N -0.520 5.520 12 Si 0.778 3.222 13 H -0.170 1.170 14 H -0.219 1.219 15 H -0.187 1.187 16 C 0.308 3.692 17 O -0.514 6.514 18 C -0.099 4.099 19 H 0.135 0.865 20 C -0.185 4.185 21 C -0.112 4.112 22 C -0.053 4.053 23 C -0.174 4.174 24 C 0.095 3.905 25 F -0.112 7.112 26 C -0.214 4.214 27 C 0.088 3.912 28 F -0.119 7.119 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.308 -9.895 -4.222 10.763 hybrid contribution 0.278 1.191 0.753 1.436 sum 0.586 -8.705 -3.469 9.389 Atomic orbital electron populations 1.23569 0.74827 1.05814 1.02427 1.86510 1.25060 1.32404 1.83775 1.23886 0.92230 0.81208 0.70928 1.90647 1.67977 1.37555 1.46948 1.21617 0.86477 0.99739 1.06959 1.21015 0.83659 0.94005 1.01005 1.43347 1.03031 1.65728 1.05554 1.19513 1.20403 1.10632 0.97190 0.88203 1.26261 1.00677 0.93079 0.98612 1.70083 1.34436 1.04801 1.42655 0.85563 0.78845 0.78560 0.79242 1.17016 1.21865 1.18696 1.20443 0.89774 0.76400 0.82608 1.90488 1.71013 1.56383 1.33555 1.20394 0.93008 1.02745 0.93775 0.86545 1.21700 1.00988 0.92658 1.03180 1.20025 0.97971 0.95415 0.97784 1.20815 0.95368 0.98670 0.90426 1.21399 0.99137 0.98019 0.98885 1.17238 0.97874 0.96189 0.79166 1.91500 1.87619 1.93512 1.38527 1.21031 1.06262 1.03803 0.90310 1.17448 0.98760 0.90677 0.84319 1.91487 1.90226 1.72881 1.57267 0.92290 0.84567 0.91974 0.87265 0.85460 0.92011 0.93734 0.91899 0.91778 0.91825 0.90075 0.83720 0.81342 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -9.66 10.57 -51.44 -0.54 -10.20 16 3 C 0.47 15.53 7.96 71.23 0.57 16.09 16 4 O -0.54 -21.17 15.73 21.98 0.35 -20.82 16 5 C -0.11 -3.62 6.13 29.85 0.18 -3.44 16 6 C 0.13 5.49 4.75 86.38 0.41 5.90 16 7 N -0.46 -21.23 2.43 -635.54 -1.54 -22.77 16 8 C -0.35 -15.87 7.01 84.04 0.59 -15.28 16 9 H 0.10 4.15 7.90 -2.91 -0.02 4.13 16 10 C 0.02 0.85 3.46 84.93 0.29 1.14 16 11 N -0.88 -46.14 11.47 21.66 0.25 -45.89 16 12 Si 0.95 36.66 29.59 68.60 2.03 38.69 16 13 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16 14 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 16 C 0.52 24.69 6.22 87.66 0.55 25.23 16 17 O -0.63 -32.39 14.36 -3.07 -0.04 -32.43 16 18 C -0.08 -3.33 1.99 -12.28 -0.02 -3.35 16 19 H 0.12 5.53 3.48 -2.39 -0.01 5.52 16 20 C -0.13 -4.42 8.90 71.98 0.64 -3.78 16 21 C -0.11 -4.32 4.48 -19.82 -0.09 -4.41 16 22 C -0.03 -1.16 7.82 22.26 0.17 -0.98 16 23 C -0.16 -4.37 10.02 22.32 0.22 -4.15 16 24 C 0.11 3.35 7.30 22.37 0.16 3.52 16 25 F -0.13 -3.61 17.27 44.97 0.78 -2.83 16 26 C -0.19 -6.17 10.01 22.36 0.22 -5.95 16 27 C 0.11 4.11 7.24 22.37 0.16 4.27 16 28 F -0.14 -5.87 16.19 44.97 0.73 -5.14 16 29 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 33 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.06 2.77 8.02 -2.39 -0.02 2.75 16 35 H 0.04 2.16 7.22 -2.38 -0.02 2.14 16 36 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 37 H 0.06 1.93 7.28 -2.39 -0.02 1.91 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.08 2.86 6.30 -2.39 -0.02 2.85 16 40 H 0.15 4.59 7.32 -2.91 -0.02 4.57 16 41 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -63.53 363.55 8.32 -55.20 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 1.07 Total: 29.68 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 5.26 Total: 16.53 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.30 Total: -68.67 kcal Atomic # 8 Polarization: -63.22 SS G_CDS: -0.24 Total: -63.46 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 1.50 Total: -7.97 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -63.53 8.32 -55.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329666291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.284 kcal (2) G-P(sol) polarization free energy of solvation -63.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds