Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00173 * 2 1 4 4 O 1.20831 * 119.99764 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00170 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46867 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46577 * 179.97438 * 6 5 3 8 8 C 1.37100 * 120.00354 * 264.44972 * 7 6 5 9 9 H 1.08004 * 119.99378 * 136.85507 * 8 7 6 10 10 C 1.38945 * 120.00267 * 316.85810 * 8 7 6 11 11 N 1.31417 * 119.99743 * 343.31245 * 10 8 7 12 12 Si 1.86793 * 119.99939 * 163.30909 * 10 8 7 13 13 H 1.48502 * 109.47492 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46975 * 120.00189 * 12 10 8 15 15 H 1.48506 * 109.47393 * 240.00018 * 12 10 8 16 16 C 1.34779 * 119.99773 * 84.46113 * 7 6 5 17 17 O 1.21294 * 119.99800 * 355.70304 * 16 7 6 18 18 C 1.50693 * 120.00415 * 175.98759 * 16 7 6 19 19 H 1.09004 * 109.46896 * 39.18019 * 18 16 7 20 20 C 1.53003 * 109.47139 * 279.18350 * 18 16 7 21 21 C 1.50704 * 109.47642 * 159.17845 * 18 16 7 22 22 C 1.38232 * 119.98356 * 59.72625 * 21 18 16 23 23 C 1.38186 * 120.04741 * 179.77159 * 22 21 18 24 24 C 1.38496 * 120.02376 * 0.50537 * 23 22 21 25 25 F 1.35100 * 120.00746 * 179.77286 * 24 23 22 26 26 C 1.38399 * 119.97434 * 359.74706 * 24 23 22 27 27 C 1.38429 * 119.95244 * 359.97438 * 26 24 23 28 28 F 1.35099 * 120.01802 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47124 * 300.00734 * 1 2 3 31 31 H 1.09010 * 109.46558 * 60.00261 * 1 2 3 32 32 H 1.09000 * 109.47302 * 60.00160 * 5 3 2 33 33 H 1.09001 * 109.46907 * 299.99550 * 5 3 2 34 34 H 1.08997 * 109.46946 * 60.00649 * 6 5 3 35 35 H 1.08994 * 109.47602 * 300.00021 * 6 5 3 36 36 H 0.97003 * 119.99349 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.46392 * 293.25803 * 20 18 16 38 38 H 1.09001 * 109.47345 * 53.25850 * 20 18 16 39 39 H 1.08998 * 109.47051 * 173.26064 * 20 18 16 40 40 H 1.08002 * 119.97628 * 0.02562 * 22 21 18 41 41 H 1.07997 * 119.98518 * 180.25302 * 23 22 21 42 42 H 1.08000 * 120.02287 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1408 2.9702 1.1832 9 1 7.0331 2.3917 1.3719 10 6 5.6795 3.8677 2.1383 11 7 4.8118 4.7959 1.8029 12 14 6.2928 3.7548 3.8991 13 1 7.2578 2.6322 4.0163 14 1 6.9649 5.0256 4.2716 15 1 5.1437 3.5173 4.8093 16 6 6.1429 2.7405 -1.1602 17 8 5.5500 2.5288 -2.1969 18 6 7.6403 2.9098 -1.1696 19 1 8.0672 2.4161 -0.2965 20 6 7.9854 4.3999 -1.1325 21 6 8.2077 2.2937 -2.4225 22 6 7.8068 2.7556 -3.6621 23 6 8.3298 2.1949 -4.8117 24 6 9.2485 1.1623 -4.7231 25 9 9.7561 0.6112 -5.8473 26 6 9.6466 0.6956 -3.4825 27 6 9.1264 1.2619 -2.3315 28 9 9.5145 0.8077 -1.1198 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 3.9565 0.7806 -0.8891 33 1 3.9557 0.7810 0.8909 34 1 3.6101 3.2367 0.8894 35 1 3.6108 3.2357 -0.8906 36 1 4.4895 5.4222 2.4699 37 1 7.6631 4.8706 -2.0614 38 1 7.4762 4.8700 -0.2912 39 1 9.0627 4.5206 -1.0187 40 1 7.0874 3.5581 -3.7322 41 1 8.0189 2.5593 -5.7797 42 1 10.3633 -0.1094 -3.4125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329666304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -188.269925 kcal Electronic energy + Delta-G solvation = -30171.171299 eV Core-core repulsion = 25559.572677 eV Total energy + Delta-G solvation = -4611.598622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.89360 -48.77335 -40.10134 -39.48645 -38.08596 -36.21990 -35.03212 -33.50765 -32.03911 -30.76888 -30.50518 -28.68192 -27.51000 -25.10733 -24.59971 -23.38984 -22.80377 -21.35657 -20.16621 -19.15547 -18.05275 -17.48963 -17.21394 -16.64041 -16.28117 -16.16982 -15.88358 -15.74611 -15.54878 -15.21729 -15.11962 -14.55602 -14.32042 -14.14861 -13.93605 -13.68505 -13.58308 -13.24630 -12.69986 -12.49290 -12.43588 -12.25208 -12.05451 -11.80608 -11.71850 -11.51510 -11.47576 -11.26343 -11.09930 -10.93354 -10.75985 -10.57168 -10.47465 -10.40772 -10.11130 -10.02116 -9.20839 -8.85160 -8.63711 -8.27835 -7.62826 -6.47819 -4.27176 1.14823 1.24289 2.63527 3.01652 3.05710 3.17552 3.20083 3.56999 3.75542 4.03009 4.03965 4.55673 4.61315 4.78863 4.87176 4.97407 5.04989 5.21844 5.27914 5.28447 5.39330 5.60702 5.74944 5.76564 5.81221 5.90275 5.94311 5.98068 6.12594 6.23428 6.25288 6.28112 6.37764 6.42353 6.68840 6.71611 6.80948 6.87099 6.99341 7.21939 7.35525 7.81112 8.14553 8.23348 8.96009 9.32990 9.76969 10.54734 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.004095 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.789870 B = 6836.643093 C = 8838.538384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.506 6.506 5 C -0.127 4.127 6 C 0.138 3.862 7 N -0.433 5.433 8 C -0.350 4.350 9 H 0.091 0.909 10 C 0.051 3.949 11 N -0.852 5.852 12 Si 0.910 3.090 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.485 3.515 17 O -0.597 6.597 18 C -0.057 4.057 19 H 0.103 0.897 20 C -0.127 4.127 21 C -0.099 4.099 22 C -0.021 4.021 23 C -0.169 4.169 24 C 0.116 3.884 25 F -0.139 7.139 26 C -0.200 4.200 27 C 0.129 3.871 28 F -0.130 7.130 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.271 0.729 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -5.668 -5.092 8.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.393 6.393 5 C -0.166 4.166 6 C 0.014 3.986 7 N -0.151 5.151 8 C -0.478 4.478 9 H 0.108 0.892 10 C -0.157 4.157 11 N -0.487 5.487 12 Si 0.736 3.264 13 H -0.190 1.190 14 H -0.205 1.205 15 H -0.205 1.205 16 C 0.273 3.727 17 O -0.482 6.482 18 C -0.079 4.079 19 H 0.121 0.879 20 C -0.185 4.185 21 C -0.100 4.100 22 C -0.039 4.039 23 C -0.188 4.188 24 C 0.096 3.904 25 F -0.118 7.118 26 C -0.219 4.219 27 C 0.110 3.890 28 F -0.109 7.109 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.648 -5.332 -5.474 8.087 hybrid contribution 0.158 -0.279 1.072 1.119 sum 2.805 -5.611 -4.402 7.664 Atomic orbital electron populations 1.23171 0.77352 1.03044 1.02331 1.86543 1.22762 1.34424 1.84629 1.24089 0.92402 0.80884 0.71686 1.90652 1.67289 1.36222 1.45138 1.21936 0.85853 1.03447 1.05334 1.21057 0.82325 0.90612 1.04648 1.43277 1.04180 1.62515 1.05092 1.19405 1.12264 1.22922 0.93214 0.89189 1.25460 0.96425 0.93467 1.00331 1.69936 1.30017 1.14124 1.34634 0.86135 0.78981 0.78613 0.82636 1.18975 1.20517 1.20476 1.20232 0.88654 0.80113 0.83652 1.90538 1.70484 1.54744 1.32460 1.19961 0.94800 0.98380 0.94711 0.87869 1.21602 1.00882 0.92772 1.03231 1.19892 0.96922 0.96266 0.96933 1.20846 0.95141 0.98298 0.89602 1.21181 0.99138 0.97949 1.00511 1.17260 0.96551 0.95032 0.81539 1.91487 1.85918 1.84605 1.49795 1.20836 1.05872 1.04753 0.90470 1.17153 0.96850 0.95020 0.80003 1.91504 1.89567 1.87882 1.41906 0.88617 0.92163 0.92169 0.88177 0.87818 0.87542 0.91819 0.91821 0.93004 0.89660 0.92846 0.83541 0.84457 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.94 10.57 -39.26 -0.41 -6.35 16 3 C 0.47 8.81 7.96 36.00 0.29 9.10 16 4 O -0.51 -10.82 15.73 -18.75 -0.30 -11.11 16 5 C -0.13 -2.46 6.10 -27.88 -0.17 -2.63 16 6 C 0.14 3.14 4.12 -4.04 -0.02 3.12 16 7 N -0.43 -9.97 2.49 -114.81 -0.29 -10.25 16 8 C -0.35 -8.08 7.81 -14.93 -0.12 -8.20 16 9 H 0.09 2.02 6.79 -52.48 -0.36 1.66 16 10 C 0.05 1.20 4.97 -17.47 -0.09 1.11 16 11 N -0.85 -21.32 11.68 55.50 0.65 -20.67 16 12 Si 0.91 18.35 29.58 -169.99 -5.03 13.32 16 13 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 14 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 16 C 0.48 10.70 6.71 -10.99 -0.07 10.63 16 17 O -0.60 -14.00 14.21 5.55 0.08 -13.92 16 18 C -0.06 -1.08 2.19 -92.92 -0.20 -1.28 16 19 H 0.10 1.97 5.64 -51.93 -0.29 1.67 16 20 C -0.13 -2.20 9.04 37.16 0.34 -1.86 16 21 C -0.10 -1.67 4.61 -104.54 -0.48 -2.15 16 22 C -0.02 -0.33 7.77 -39.60 -0.31 -0.63 16 23 C -0.17 -2.32 10.03 -39.51 -0.40 -2.72 16 24 C 0.12 1.60 7.30 -39.43 -0.29 1.31 16 25 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 26 C -0.20 -2.78 10.01 -39.45 -0.39 -3.17 16 27 C 0.13 2.05 7.24 -39.43 -0.29 1.76 16 28 F -0.13 -2.11 16.19 2.25 0.04 -2.08 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 31 H 0.06 0.73 8.13 -51.92 -0.42 0.30 16 32 H 0.10 1.93 8.07 -51.93 -0.42 1.51 16 33 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 34 H 0.11 2.65 5.83 -51.93 -0.30 2.35 16 35 H 0.06 1.56 7.62 -51.93 -0.40 1.16 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.05 0.84 7.19 -51.93 -0.37 0.47 16 38 H 0.08 1.68 7.55 -51.93 -0.39 1.29 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.15 2.36 6.96 -52.49 -0.37 1.99 16 41 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -27.60 366.21 -5.83 -33.43 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.99 Total: 8.06 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.13 Total: 5.88 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.36 Total: -30.92 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.63 Total: -31.39 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.08 Total: -3.91 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.60 -5.83 -33.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329666304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.841 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds