Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00173 * 2 1 4 4 O 1.20831 * 119.99764 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00170 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46867 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46577 * 179.97438 * 6 5 3 8 8 C 1.37100 * 120.00354 * 264.44972 * 7 6 5 9 9 H 1.08004 * 119.99378 * 136.85507 * 8 7 6 10 10 C 1.38945 * 120.00267 * 316.85810 * 8 7 6 11 11 N 1.31417 * 119.99743 * 343.31245 * 10 8 7 12 12 Si 1.86793 * 119.99939 * 163.30909 * 10 8 7 13 13 H 1.48502 * 109.47492 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46975 * 120.00189 * 12 10 8 15 15 H 1.48506 * 109.47393 * 240.00018 * 12 10 8 16 16 C 1.34779 * 119.99773 * 84.46113 * 7 6 5 17 17 O 1.21294 * 119.99800 * 355.70304 * 16 7 6 18 18 C 1.50693 * 120.00415 * 175.98759 * 16 7 6 19 19 H 1.09004 * 109.46896 * 39.18019 * 18 16 7 20 20 C 1.53003 * 109.47139 * 279.18350 * 18 16 7 21 21 C 1.50704 * 109.47642 * 159.17845 * 18 16 7 22 22 C 1.38232 * 119.98356 * 59.72625 * 21 18 16 23 23 C 1.38186 * 120.04741 * 179.77159 * 22 21 18 24 24 C 1.38496 * 120.02376 * 0.50537 * 23 22 21 25 25 F 1.35100 * 120.00746 * 179.77286 * 24 23 22 26 26 C 1.38399 * 119.97434 * 359.74706 * 24 23 22 27 27 C 1.38429 * 119.95244 * 359.97438 * 26 24 23 28 28 F 1.35099 * 120.01802 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47124 * 300.00734 * 1 2 3 31 31 H 1.09010 * 109.46558 * 60.00261 * 1 2 3 32 32 H 1.09000 * 109.47302 * 60.00160 * 5 3 2 33 33 H 1.09001 * 109.46907 * 299.99550 * 5 3 2 34 34 H 1.08997 * 109.46946 * 60.00649 * 6 5 3 35 35 H 1.08994 * 109.47602 * 300.00021 * 6 5 3 36 36 H 0.97003 * 119.99349 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.46392 * 293.25803 * 20 18 16 38 38 H 1.09001 * 109.47345 * 53.25850 * 20 18 16 39 39 H 1.08998 * 109.47051 * 173.26064 * 20 18 16 40 40 H 1.08002 * 119.97628 * 0.02562 * 22 21 18 41 41 H 1.07997 * 119.98518 * 180.25302 * 23 22 21 42 42 H 1.08000 * 120.02287 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1408 2.9702 1.1832 9 1 7.0331 2.3917 1.3719 10 6 5.6795 3.8677 2.1383 11 7 4.8118 4.7959 1.8029 12 14 6.2928 3.7548 3.8991 13 1 7.2578 2.6322 4.0163 14 1 6.9649 5.0256 4.2716 15 1 5.1437 3.5173 4.8093 16 6 6.1429 2.7405 -1.1602 17 8 5.5500 2.5288 -2.1969 18 6 7.6403 2.9098 -1.1696 19 1 8.0672 2.4161 -0.2965 20 6 7.9854 4.3999 -1.1325 21 6 8.2077 2.2937 -2.4225 22 6 7.8068 2.7556 -3.6621 23 6 8.3298 2.1949 -4.8117 24 6 9.2485 1.1623 -4.7231 25 9 9.7561 0.6112 -5.8473 26 6 9.6466 0.6956 -3.4825 27 6 9.1264 1.2619 -2.3315 28 9 9.5145 0.8077 -1.1198 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 3.9565 0.7806 -0.8891 33 1 3.9557 0.7810 0.8909 34 1 3.6101 3.2367 0.8894 35 1 3.6108 3.2357 -0.8906 36 1 4.4895 5.4222 2.4699 37 1 7.6631 4.8706 -2.0614 38 1 7.4762 4.8700 -0.2912 39 1 9.0627 4.5206 -1.0187 40 1 7.0874 3.5581 -3.7322 41 1 8.0189 2.5593 -5.7797 42 1 10.3633 -0.1094 -3.4125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329666304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -200.919143 kcal Electronic energy + Delta-G solvation = -30171.719811 eV Core-core repulsion = 25559.572677 eV Total energy + Delta-G solvation = -4612.147133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.00473 -49.97113 -41.60065 -40.99016 -39.48947 -37.66515 -36.78119 -34.97025 -33.81698 -32.34004 -31.72757 -29.96277 -28.70821 -26.89900 -26.09544 -24.79890 -24.01401 -22.73619 -21.67106 -20.88814 -19.23282 -19.03151 -18.57290 -18.12666 -17.73601 -17.63003 -17.36147 -16.94221 -16.87079 -16.58917 -16.30109 -16.13100 -15.74289 -15.58345 -15.38827 -15.10104 -14.87945 -14.69140 -14.23883 -13.92582 -13.74592 -13.69780 -13.45873 -13.29109 -13.05863 -12.95364 -12.83564 -12.75843 -12.64123 -12.59649 -12.14584 -12.02761 -12.01196 -11.84424 -11.75206 -11.61131 -10.99542 -10.33249 -9.98126 -9.56936 -9.44669 -8.28208 -6.12480 -0.03795 0.09061 1.11602 1.43635 1.51535 1.62088 1.65831 2.03310 2.31994 2.41149 2.87412 2.99899 3.06833 3.43780 3.64105 3.66991 3.82920 3.94718 4.08663 4.18064 4.21627 4.29721 4.30683 4.40475 4.42656 4.48153 4.59420 4.68101 4.78236 4.86786 4.96048 4.97894 5.01688 5.03343 5.12605 5.24817 5.37960 5.39393 5.44702 5.52189 5.81285 6.02978 6.40244 6.68437 7.14652 7.55375 7.98704 8.75195 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.004095 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.789870 B = 6836.643093 C = 8838.538384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.117 4.117 6 C 0.145 3.855 7 N -0.445 5.445 8 C -0.352 4.352 9 H 0.098 0.902 10 C 0.013 3.987 11 N -0.889 5.889 12 Si 0.972 3.028 13 H -0.254 1.254 14 H -0.280 1.280 15 H -0.283 1.283 16 C 0.477 3.523 17 O -0.615 6.615 18 C -0.050 4.050 19 H 0.098 0.902 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.031 4.031 23 C -0.159 4.159 24 C 0.120 3.880 25 F -0.133 7.133 26 C -0.189 4.189 27 C 0.120 3.880 28 F -0.135 7.135 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.035 0.965 36 H 0.270 0.730 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.163 0.837 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.470 -7.393 -5.481 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.155 4.155 6 C 0.021 3.979 7 N -0.162 5.162 8 C -0.479 4.479 9 H 0.115 0.885 10 C -0.191 4.191 11 N -0.525 5.525 12 Si 0.796 3.204 13 H -0.177 1.177 14 H -0.206 1.206 15 H -0.209 1.209 16 C 0.266 3.734 17 O -0.502 6.502 18 C -0.071 4.071 19 H 0.117 0.883 20 C -0.177 4.177 21 C -0.117 4.117 22 C -0.049 4.049 23 C -0.178 4.178 24 C 0.100 3.900 25 F -0.112 7.112 26 C -0.209 4.209 27 C 0.100 3.900 28 F -0.114 7.114 29 H 0.156 0.844 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.155 0.845 41 H 0.180 0.820 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.856 -7.088 -5.869 9.978 hybrid contribution -0.267 0.205 1.075 1.127 sum 3.590 -6.883 -4.794 9.124 Atomic orbital electron populations 1.23583 0.74758 1.05862 1.02468 1.86511 1.25186 1.32440 1.83847 1.23847 0.92115 0.81261 0.71015 1.90643 1.67842 1.37434 1.46753 1.21707 0.86793 1.01018 1.06010 1.20783 0.82634 0.92474 1.02021 1.43468 1.04189 1.62921 1.05655 1.19631 1.12365 1.22710 0.93226 0.88470 1.26180 0.96438 0.92918 1.03587 1.70051 1.31611 1.15134 1.35677 0.85184 0.78364 0.78714 0.78099 1.17719 1.20574 1.20925 1.20849 0.90220 0.79241 0.83043 1.90508 1.71365 1.55370 1.32954 1.19856 0.92170 0.99285 0.95837 0.88349 1.21528 1.02236 0.91717 1.02191 1.19798 0.98123 0.97397 0.96395 1.20791 0.95507 0.98597 0.89985 1.21377 0.98240 0.97270 1.00878 1.17276 0.96225 0.94775 0.81698 1.91510 1.85763 1.84450 1.49453 1.21037 1.05478 1.04671 0.89688 1.17209 0.97195 0.95115 0.80457 1.91488 1.89629 1.87922 1.42316 0.84444 0.92058 0.92125 0.87977 0.86476 0.89815 0.94626 0.91998 0.92512 0.92542 0.90165 0.84517 0.81969 0.81534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.35 10.57 -51.42 -0.54 -11.89 16 3 C 0.47 18.01 7.96 71.24 0.57 18.57 16 4 O -0.54 -23.52 15.73 21.95 0.35 -23.18 16 5 C -0.12 -4.59 6.10 29.85 0.18 -4.41 16 6 C 0.15 6.91 4.12 86.38 0.36 7.26 16 7 N -0.44 -21.03 2.49 -635.54 -1.58 -22.61 16 8 C -0.35 -16.44 7.81 84.04 0.66 -15.79 16 9 H 0.10 4.34 6.79 -2.91 -0.02 4.32 16 10 C 0.01 0.63 4.97 84.92 0.42 1.05 16 11 N -0.89 -45.89 11.68 21.66 0.25 -45.64 16 12 Si 0.97 37.68 29.58 68.60 2.03 39.71 16 13 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 14 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 15 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 16 C 0.48 21.51 6.71 87.65 0.59 22.09 16 17 O -0.62 -29.55 14.21 -3.07 -0.04 -29.60 16 18 C -0.05 -1.90 2.19 -12.29 -0.03 -1.92 16 19 H 0.10 3.75 5.64 -2.38 -0.01 3.74 16 20 C -0.12 -4.13 9.04 71.98 0.65 -3.48 16 21 C -0.12 -3.83 4.61 -19.81 -0.09 -3.93 16 22 C -0.03 -0.94 7.77 22.26 0.17 -0.76 16 23 C -0.16 -4.01 10.03 22.32 0.22 -3.79 16 24 C 0.12 2.97 7.30 22.37 0.16 3.14 16 25 F -0.13 -3.15 17.27 44.97 0.78 -2.37 16 26 C -0.19 -4.77 10.01 22.35 0.22 -4.54 16 27 C 0.12 3.60 7.24 22.37 0.16 3.77 16 28 F -0.14 -4.21 16.19 44.97 0.73 -3.48 16 29 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 32 H 0.10 3.98 8.07 -2.39 -0.02 3.96 16 33 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 34 H 0.08 4.37 5.83 -2.39 -0.01 4.36 16 35 H 0.04 1.84 7.62 -2.39 -0.02 1.82 16 36 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 37 H 0.06 1.87 7.19 -2.39 -0.02 1.85 16 38 H 0.06 2.27 7.55 -2.39 -0.02 2.26 16 39 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.14 4.42 6.96 -2.91 -0.02 4.40 16 41 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -60.56 366.21 8.48 -52.08 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 1.07 Total: 27.91 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 5.45 Total: 19.06 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -1.33 Total: -68.25 kcal Atomic # 8 Polarization: -64.42 SS G_CDS: -0.24 Total: -64.66 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 1.50 Total: -5.85 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -60.56 8.48 -52.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329666304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.838 kcal (2) G-P(sol) polarization free energy of solvation -60.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds