Wall clock time and date at job start Sat Apr 11 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46804 * 2 1 4 4 C 1.46496 * 119.99858 * 90.00221 * 3 2 1 5 5 C 1.52997 * 109.46953 * 269.99454 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00005 * 0.02562 * 7 6 5 9 9 C 1.47516 * 119.99812 * 180.02562 * 7 6 5 10 10 O 1.34644 * 126.94451 * 0.02562 * 9 7 6 11 11 N 1.20884 * 111.46918 * 179.97438 * 10 9 7 12 12 C 1.30135 * 111.97991 * 0.02562 * 11 10 9 13 13 C 1.36817 * 126.94078 * 179.70645 * 9 7 6 14 14 C 1.50697 * 128.07860 * 0.02562 * 13 9 7 15 15 C 1.34774 * 119.99782 * 269.99447 * 3 2 1 16 16 O 1.21285 * 119.99988 * 180.02562 * 15 3 2 17 17 C 1.50706 * 120.00178 * 0.02562 * 15 3 2 18 18 S 1.80997 * 109.47088 * 179.97438 * 17 15 3 19 19 C 1.76197 * 99.99908 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00003 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99850 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99999 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47330 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47645 * 119.99919 * 23 21 19 26 26 H 1.48505 * 109.47008 * 239.99705 * 23 21 19 27 27 H 1.09001 * 109.47714 * 300.00032 * 1 2 3 28 28 H 1.08996 * 109.47389 * 60.00345 * 1 2 3 29 29 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47069 * 239.99984 * 2 1 3 31 31 H 1.09000 * 109.46920 * 119.99791 * 2 1 3 32 32 H 1.09001 * 109.47062 * 149.99949 * 4 3 2 33 33 H 1.08996 * 109.47565 * 29.99414 * 4 3 2 34 34 H 1.09001 * 109.47289 * 60.00079 * 5 4 3 35 35 H 1.09004 * 109.47261 * 300.00335 * 5 4 3 36 36 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 37 37 H 1.07998 * 126.70307 * 179.97438 * 12 11 10 38 38 H 1.09005 * 109.47185 * 89.99849 * 14 13 9 39 39 H 1.09001 * 109.46955 * 209.99531 * 14 13 9 40 40 H 1.08991 * 109.47189 * 329.99684 * 14 13 9 41 41 H 1.08998 * 109.46409 * 299.99459 * 17 15 3 42 42 H 1.08994 * 109.47146 * 59.99267 * 17 15 3 43 43 H 0.97002 * 119.99466 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 1.2687 5 6 0.9874 2.7931 1.7103 6 7 1.2317 3.4842 2.9788 7 6 0.2434 4.1906 3.5626 8 8 -0.8509 4.2539 3.0367 9 6 0.4896 4.8869 4.8395 10 8 1.6396 4.9113 5.5394 11 7 1.5300 5.5689 6.5478 12 6 0.3350 6.0680 6.6763 13 6 -0.4028 5.6434 5.5489 14 6 -1.8386 5.9495 5.2088 15 6 2.2429 2.0165 -1.1672 16 8 2.6476 3.1599 -1.1672 17 6 1.9914 1.3062 -2.4724 18 16 2.3829 2.4153 -3.8481 19 6 2.0099 1.3592 -5.2082 20 1 1.6556 0.3545 -5.0304 21 6 2.1724 1.8180 -6.5081 22 7 2.6047 3.0422 -6.7247 23 14 1.7762 0.6985 -7.9500 24 1 1.3111 -0.6172 -7.4421 25 1 0.7086 1.3157 -8.7773 26 1 2.9946 0.5067 -8.7771 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0643 2.7985 1.1384 33 1 2.5504 1.3452 2.0284 34 1 0.1855 2.0664 1.8406 35 1 0.6993 3.5197 0.9506 36 1 2.1048 3.4333 3.3985 37 1 -0.0216 6.6891 7.4846 38 1 -2.4852 5.1861 5.6416 39 1 -2.1076 6.9254 5.6131 40 1 -1.9615 5.9584 4.1259 41 1 2.6214 0.4186 -2.5301 42 1 0.9434 1.0123 -2.5299 43 1 2.7178 3.3629 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356199126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:46 Heat of formation + Delta-G solvation = -34.760531 kcal Electronic energy + Delta-G solvation = -26456.198588 eV Core-core repulsion = 22437.389771 eV Total energy + Delta-G solvation = -4018.808817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.09507 -41.20607 -40.64153 -37.48859 -36.27623 -35.58379 -34.58233 -33.56477 -32.28279 -31.15816 -29.84145 -28.79238 -27.65245 -25.40042 -24.35008 -24.02446 -23.02153 -21.84445 -20.66871 -19.79936 -19.43254 -18.88218 -18.22428 -17.45634 -17.18208 -16.88194 -16.78973 -16.56818 -16.36195 -15.79100 -15.61777 -15.01639 -14.82918 -14.76421 -14.46701 -14.40400 -14.24734 -14.19689 -14.12464 -13.65374 -13.46725 -13.22538 -13.09825 -12.91486 -12.71875 -12.60721 -12.39478 -12.33528 -11.89907 -11.68123 -11.57818 -11.45057 -11.15543 -10.90811 -10.67188 -10.26366 -10.24900 -9.84979 -8.66713 -8.34578 -6.12515 -0.35083 1.02696 1.21055 1.35851 1.41526 1.48909 1.57041 1.58320 1.79782 1.92813 2.26816 2.34924 2.99753 3.14986 3.25763 3.53430 3.64864 3.67100 3.80994 3.93512 3.99137 4.11721 4.22188 4.27698 4.34641 4.41733 4.49823 4.61232 4.71881 4.73692 4.77443 4.78117 4.88171 4.93812 5.01360 5.08914 5.26741 5.40067 5.42480 5.58253 6.14574 6.20024 6.23489 6.80314 6.97100 7.06919 7.12303 8.74854 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.001965 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.371989 B =14242.821141 C =14528.264718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.109 3.891 5 C 0.110 3.890 6 N -0.698 5.698 7 C 0.606 3.394 8 O -0.540 6.540 9 C -0.108 4.108 10 O 0.110 5.890 11 N -0.362 5.362 12 C -0.002 4.002 13 C -0.119 4.119 14 C -0.087 4.087 15 C 0.533 3.467 16 O -0.560 6.560 17 C -0.124 4.124 18 S -0.155 6.155 19 C -0.543 4.543 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.274 1.274 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.421 0.579 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -4.412 28.696 29.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 N -0.336 5.336 4 C -0.015 4.015 5 C -0.014 4.014 6 N -0.350 5.350 7 C 0.391 3.609 8 O -0.418 6.418 9 C -0.174 4.174 10 O 0.039 5.961 11 N -0.063 5.063 12 C -0.179 4.179 13 C -0.124 4.124 14 C -0.143 4.143 15 C 0.321 3.679 16 O -0.438 6.438 17 C -0.275 4.275 18 S 0.072 5.928 19 C -0.691 4.691 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.199 1.199 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.259 0.741 37 H 0.251 0.749 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.202 -2.541 28.926 29.500 hybrid contribution -0.884 -1.219 -1.296 1.987 sum -6.086 -3.760 27.630 28.541 Atomic orbital electron populations 1.22296 0.95558 1.03579 1.01795 1.21966 0.94777 0.80046 1.05546 1.47854 1.66222 1.15390 1.04127 1.21653 0.95858 0.98287 0.85663 1.21811 0.99617 0.96078 0.83930 1.45584 1.15130 1.50528 1.23773 1.16583 0.84472 0.78412 0.81476 1.90861 1.24775 1.62582 1.63578 1.23867 0.88286 1.07244 0.97966 1.84942 1.32691 1.53075 1.25416 1.73755 1.22157 1.08211 1.02182 1.25580 0.88487 1.02793 1.01062 1.22028 0.99743 0.96822 0.93768 1.20402 0.86995 1.03872 1.03067 1.20162 0.76278 0.85864 0.85603 1.90697 1.46271 1.19383 1.87462 1.23403 1.05939 1.03158 0.94988 1.85595 1.87594 1.22179 0.97453 1.23217 1.51568 1.01695 0.92574 0.89854 1.26140 0.94225 0.97177 1.01742 1.70196 1.44360 1.17876 1.22380 0.84905 0.78057 0.78228 0.76761 1.17864 1.20074 1.19930 0.91891 0.94438 0.89130 0.89743 0.86249 0.90399 0.85081 0.89594 0.94087 0.74101 0.74918 0.89054 0.88029 0.91289 0.87183 0.87698 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 71.98 0.74 -2.02 16 2 C 0.10 1.53 5.98 86.38 0.52 2.04 16 3 N -0.60 -14.13 2.47 -821.83 -2.03 -16.16 16 4 C 0.11 1.97 5.56 86.38 0.48 2.45 16 5 C 0.11 2.27 6.00 86.38 0.52 2.79 16 6 N -0.70 -12.17 5.55 -466.29 -2.59 -14.76 16 7 C 0.61 13.17 7.82 86.69 0.68 13.85 16 8 O -0.54 -15.18 15.12 -3.95 -0.06 -15.24 16 9 C -0.11 -2.03 7.29 24.39 0.18 -1.85 16 10 O 0.11 1.98 11.04 65.81 0.73 2.71 16 11 N -0.36 -6.49 12.04 -58.54 -0.71 -7.19 16 12 C 0.00 -0.02 12.14 85.69 1.04 1.02 16 13 C -0.12 -1.88 6.37 -19.45 -0.12 -2.00 16 14 C -0.09 -1.10 9.95 71.23 0.71 -0.39 16 15 C 0.53 19.21 7.69 87.66 0.67 19.88 16 16 O -0.56 -25.40 15.44 -3.05 -0.05 -25.44 16 17 C -0.12 -4.86 4.71 71.24 0.34 -4.52 16 18 S -0.16 -8.63 20.57 -56.49 -1.16 -9.79 16 19 C -0.54 -30.87 9.50 67.95 0.65 -30.22 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.67 5.49 84.86 0.47 1.14 16 22 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 23 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H 0.06 0.95 6.26 -2.39 -0.01 0.94 16 28 H 0.04 0.80 7.22 -2.39 -0.02 0.78 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.39 6.44 -2.39 -0.02 1.37 16 31 H 0.12 0.97 7.89 -2.39 -0.02 0.95 16 32 H 0.08 1.72 7.42 -2.39 -0.02 1.70 16 33 H 0.13 1.17 7.89 -2.39 -0.02 1.15 16 34 H 0.09 1.63 6.26 -2.39 -0.01 1.62 16 35 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.42 4.94 8.30 -92.71 -0.77 4.17 16 37 H 0.23 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 1.24 6.73 -2.39 -0.02 1.22 16 41 H 0.11 3.85 7.40 -2.40 -0.02 3.83 16 42 H 0.10 3.80 7.18 -2.40 -0.02 3.79 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -83.59 380.83 3.59 -80.00 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.29 Total: 14.03 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 6.85 Total: 2.15 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -5.04 Total: -93.95 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: 0.62 Total: -37.98 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -83.59 3.59 -80.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356199126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.238 kcal (2) G-P(sol) polarization free energy of solvation -83.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds