Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45209 * 109.46990 * 2 1 4 4 C 1.34699 * 116.99866 * 179.97438 * 3 2 1 5 5 O 1.21445 * 119.99800 * 0.02562 * 4 3 2 6 6 C 1.47891 * 119.99652 * 179.97438 * 4 3 2 7 7 C 1.39920 * 120.46337 * 179.97438 * 6 4 3 8 8 C 1.38436 * 118.35253 * 179.77250 * 7 6 4 9 9 C 1.39328 * 119.19525 * 0.49703 * 8 7 6 10 10 C 1.48293 * 119.56857 * 179.77021 * 9 8 7 11 11 O 1.21492 * 119.99738 * 359.72614 * 10 9 8 12 12 N 1.34776 * 119.99796 * 179.72557 * 10 9 8 13 13 C 1.39155 * 119.99826 * 183.71050 * 12 10 9 14 14 C 1.39706 * 119.57754 * 339.01752 * 13 12 10 15 15 C 1.38643 * 119.49351 * 180.02562 * 14 13 12 16 16 C 1.38353 * 118.67416 * 359.97438 * 15 14 13 17 17 C 1.40584 * 119.13093 * 0.02562 * 16 15 14 18 18 C 1.41341 * 119.78431 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99693 * 5.13471 * 18 17 16 20 20 C 1.40022 * 119.99855 * 185.12860 * 18 17 16 21 21 N 1.30749 * 119.99966 * 184.82622 * 20 18 17 22 22 Si 1.86796 * 120.00212 * 4.82465 * 20 18 17 23 23 H 1.48504 * 109.47344 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47458 * 299.99942 * 22 20 18 25 25 H 1.48504 * 109.47121 * 60.00111 * 22 20 18 26 26 N 1.31926 * 119.58092 * 159.27612 * 13 12 10 27 27 N 1.32734 * 120.86253 * 359.49334 * 9 8 7 28 28 C 1.31410 * 121.80247 * 0.25427 * 27 9 8 29 29 H 1.09002 * 109.47283 * 299.99910 * 1 2 3 30 30 H 1.08999 * 109.47599 * 60.00410 * 1 2 3 31 31 H 1.09006 * 109.47289 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47462 * 239.99913 * 2 1 3 33 33 H 1.08999 * 109.47599 * 119.99590 * 2 1 3 34 34 H 1.08004 * 120.82555 * 0.04862 * 7 6 4 35 35 H 1.07999 * 120.40195 * 180.26618 * 8 7 6 36 36 H 0.96995 * 120.00068 * 3.70898 * 12 10 9 37 37 H 1.08000 * 120.25215 * 359.97438 * 14 13 12 38 38 H 1.08005 * 120.66577 * 179.97438 * 15 14 13 39 39 H 1.07998 * 120.43207 * 180.02562 * 16 15 14 40 40 H 0.96997 * 119.99681 * 354.98891 * 21 20 18 41 41 H 1.08002 * 119.64254 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3493 1.5455 0.0005 5 8 4.0890 0.5824 0.0005 6 6 3.9145 2.9122 0.0000 7 6 5.3001 3.1068 0.0011 8 6 5.7816 4.4047 -0.0043 9 6 4.8778 5.4650 0.0000 10 6 5.3846 6.8586 -0.0006 11 8 6.5810 7.0699 0.0003 12 7 4.5180 7.8908 -0.0021 13 6 4.9917 9.1969 -0.0806 14 6 6.3129 9.4740 0.2792 15 6 6.7829 10.7760 0.2008 16 6 5.9220 11.7675 -0.2352 17 6 4.6036 11.4248 -0.5828 18 6 3.7123 12.4268 -1.0294 19 1 4.0666 13.4356 -1.1820 20 6 2.3702 12.1114 -1.2741 21 7 1.5678 13.0132 -1.7765 22 14 1.7260 10.4022 -0.8828 23 1 0.2843 10.3250 -1.2304 24 1 2.4806 9.3960 -1.6723 25 1 1.9008 10.1271 0.5660 26 7 4.1860 10.1584 -0.4889 27 7 3.5690 5.2440 -0.0010 28 6 3.0720 4.0275 -0.0010 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.9771 2.2654 0.0015 35 1 6.8451 4.5931 -0.0080 36 1 3.5641 7.7233 0.0515 37 1 6.9629 8.6803 0.6165 38 1 7.8008 11.0116 0.4746 39 1 6.2584 12.7911 -0.3075 40 1 1.8824 13.9207 -1.9119 41 1 2.0011 3.8880 -0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361939770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = -49.393938 kcal Electronic energy + Delta-G solvation = -27733.238821 eV Core-core repulsion = 23578.351500 eV Total energy + Delta-G solvation = -4154.887321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37929 -40.57135 -39.55883 -38.08479 -37.08466 -34.78976 -33.65050 -33.09076 -32.57419 -31.70204 -31.15290 -29.58155 -26.53346 -25.31424 -24.11246 -23.76688 -22.67996 -21.84600 -21.53802 -20.20947 -18.86073 -18.50099 -18.05395 -17.47123 -17.04503 -16.88905 -16.24596 -15.57861 -15.43849 -15.08785 -14.87735 -14.70861 -14.34278 -14.06789 -13.81770 -13.67828 -13.59055 -13.33129 -13.07638 -12.85765 -12.78629 -12.43696 -12.24568 -12.10225 -11.91988 -11.34972 -11.19551 -11.01939 -10.86616 -10.49349 -10.33531 -10.17708 -10.05505 -9.73184 -9.69463 -9.38385 -9.18324 -8.59791 -7.76036 -7.53578 -7.24288 -4.80780 -0.26694 0.74394 1.76377 2.05751 2.28929 2.60780 2.83955 2.99376 3.52936 3.56355 3.66254 3.73254 3.98542 4.11538 4.28597 4.39811 4.41304 4.46357 4.47597 4.51250 4.61497 4.71193 4.79573 5.15018 5.28392 5.31610 5.44544 5.47397 5.49127 5.55103 5.82227 5.90941 5.97902 6.02850 6.38478 6.45704 6.48681 7.03682 7.09501 7.18246 7.26402 7.41454 7.51877 7.57193 7.70792 8.06174 8.17254 8.33926 8.61428 9.35995 9.98106 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.002640 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.407503 B =10603.088185 C =12423.465248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.064 3.936 3 O -0.351 6.351 4 C 0.518 3.482 5 O -0.501 6.501 6 C -0.166 4.166 7 C -0.014 4.014 8 C -0.121 4.121 9 C 0.123 3.877 10 C 0.568 3.432 11 O -0.500 6.500 12 N -0.628 5.628 13 C 0.381 3.619 14 C -0.312 4.312 15 C -0.036 4.036 16 C -0.272 4.272 17 C 0.272 3.728 18 C -0.474 4.474 19 H 0.084 0.916 20 C 0.043 3.957 21 N -0.804 5.804 22 Si 1.152 2.848 23 H -0.331 1.331 24 H -0.278 1.278 25 H -0.293 1.293 26 N -0.595 5.595 27 N -0.463 5.463 28 C 0.162 3.838 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.418 0.582 37 H 0.145 0.855 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.283 0.717 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 -23.713 4.012 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 O -0.267 6.267 4 C 0.362 3.638 5 O -0.389 6.389 6 C -0.169 4.169 7 C -0.039 4.039 8 C -0.142 4.142 9 C -0.015 4.015 10 C 0.352 3.648 11 O -0.374 6.374 12 N -0.272 5.272 13 C 0.150 3.850 14 C -0.337 4.337 15 C -0.060 4.060 16 C -0.295 4.295 17 C 0.148 3.852 18 C -0.506 4.506 19 H 0.102 0.898 20 C -0.178 4.178 21 N -0.425 5.425 22 Si 0.987 3.013 23 H -0.265 1.265 24 H -0.206 1.206 25 H -0.221 1.221 26 N -0.320 5.320 27 N -0.174 5.174 28 C 0.002 3.998 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.256 0.744 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.911 -24.121 3.632 24.468 hybrid contribution 2.319 0.505 0.221 2.384 sum 0.408 -23.616 3.853 23.932 Atomic orbital electron populations 1.21833 0.92169 1.03229 1.03926 1.23116 0.95639 0.79326 1.02879 1.86539 1.23181 1.33099 1.83926 1.20835 0.80950 0.89165 0.72855 1.90849 1.60468 1.42143 1.45483 1.20328 0.95101 0.91935 1.09546 1.21765 0.93645 0.97918 0.90607 1.22130 1.02679 0.91005 0.98348 1.21505 0.89603 0.94624 0.95734 1.17761 0.85910 0.83382 0.77722 1.90700 1.14910 1.83622 1.48133 1.43024 1.11511 1.04124 1.68556 1.18087 0.90527 0.82973 0.93390 1.21710 0.96335 0.98286 1.17366 1.20950 0.97700 0.92595 0.94738 1.21643 0.95756 0.98763 1.13303 1.18280 0.91192 0.87467 0.88277 1.20739 0.95148 0.96452 1.38230 0.89792 1.27801 0.93349 1.07635 0.89050 1.70650 1.39667 1.04864 1.27360 0.81889 0.70201 0.71690 0.77543 1.26460 1.20606 1.22146 1.66013 1.36567 1.01423 1.28025 1.67741 1.13697 1.24643 1.11346 1.23249 1.01072 0.85623 0.89889 0.91201 0.91167 0.90016 0.90920 0.90934 0.82438 0.81930 0.74434 0.83780 0.87449 0.87570 0.90562 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 10.29 37.15 0.38 -0.26 16 2 C 0.06 0.40 6.19 37.15 0.23 0.63 16 3 O -0.35 -2.91 9.50 -40.49 -0.38 -3.30 16 4 C 0.52 5.02 7.91 34.68 0.27 5.30 16 5 O -0.50 -5.84 16.20 -19.22 -0.31 -6.15 16 6 C -0.17 -1.57 5.89 -104.74 -0.62 -2.19 16 7 C -0.01 -0.12 9.71 -38.88 -0.38 -0.50 16 8 C -0.12 -1.27 9.62 -39.10 -0.38 -1.65 16 9 C 0.12 1.65 6.75 -82.94 -0.56 1.09 16 10 C 0.57 9.68 7.71 -12.12 -0.09 9.59 16 11 O -0.50 -9.30 12.97 5.37 0.07 -9.23 16 12 N -0.63 -12.19 5.40 -12.13 -0.07 -12.25 16 13 C 0.38 8.78 7.51 -155.06 -1.16 7.61 16 14 C -0.31 -6.92 8.89 -38.88 -0.35 -7.26 16 15 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 16 C -0.27 -6.42 9.83 -38.65 -0.38 -6.80 16 17 C 0.27 7.12 6.40 -85.00 -0.54 6.58 16 18 C -0.47 -12.86 9.57 -37.73 -0.36 -13.22 16 19 H 0.08 2.26 8.05 -52.48 -0.42 1.84 16 20 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 21 N -0.80 -21.83 13.65 55.55 0.76 -21.07 16 22 Si 1.15 28.03 25.61 -169.99 -4.35 23.68 16 23 H -0.33 -7.96 7.11 56.52 0.40 -7.56 16 24 H -0.28 -6.73 6.61 56.52 0.37 -6.35 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 N -0.59 -15.14 4.54 -10.27 -0.05 -15.19 16 27 N -0.46 -5.86 9.52 -9.47 -0.09 -5.95 16 28 C 0.16 1.60 10.78 -17.16 -0.19 1.41 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.16 1.13 7.73 -52.48 -0.41 0.73 16 35 H 0.16 1.52 7.63 -52.49 -0.40 1.12 16 36 H 0.42 7.63 8.15 -40.82 -0.33 7.29 16 37 H 0.14 3.06 5.17 -52.92 -0.27 2.78 16 38 H 0.11 1.95 8.06 -52.48 -0.42 1.52 16 39 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.28 7.34 8.72 -40.82 -0.36 6.99 16 41 H 0.18 1.32 7.62 -52.49 -0.40 0.92 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -31.72 360.81 -7.97 -39.70 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.37 Total: 4.10 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -4.61 Total: 0.23 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.56 Total: -54.47 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.63 Total: -18.67 kcal Atomic # 14 Polarization: 28.03 SS G_CDS: -4.35 Total: 23.68 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.72 -7.97 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361939770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.698 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds