Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45209 * 109.46990 * 2 1 4 4 C 1.34699 * 116.99866 * 179.97438 * 3 2 1 5 5 O 1.21445 * 119.99800 * 0.02562 * 4 3 2 6 6 C 1.47891 * 119.99652 * 179.97438 * 4 3 2 7 7 C 1.39920 * 120.46337 * 179.97438 * 6 4 3 8 8 C 1.38436 * 118.35253 * 179.77250 * 7 6 4 9 9 C 1.39328 * 119.19525 * 0.49703 * 8 7 6 10 10 C 1.48293 * 119.56857 * 179.77021 * 9 8 7 11 11 O 1.21492 * 119.99738 * 359.72614 * 10 9 8 12 12 N 1.34776 * 119.99796 * 179.72557 * 10 9 8 13 13 C 1.39155 * 119.99826 * 183.71050 * 12 10 9 14 14 C 1.39706 * 119.57754 * 339.01752 * 13 12 10 15 15 C 1.38643 * 119.49351 * 180.02562 * 14 13 12 16 16 C 1.38353 * 118.67416 * 359.97438 * 15 14 13 17 17 C 1.40584 * 119.13093 * 0.02562 * 16 15 14 18 18 C 1.41341 * 119.78431 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99693 * 5.13471 * 18 17 16 20 20 C 1.40022 * 119.99855 * 185.12860 * 18 17 16 21 21 N 1.30749 * 119.99966 * 184.82622 * 20 18 17 22 22 Si 1.86796 * 120.00212 * 4.82465 * 20 18 17 23 23 H 1.48504 * 109.47344 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47458 * 299.99942 * 22 20 18 25 25 H 1.48504 * 109.47121 * 60.00111 * 22 20 18 26 26 N 1.31926 * 119.58092 * 159.27612 * 13 12 10 27 27 N 1.32734 * 120.86253 * 359.49334 * 9 8 7 28 28 C 1.31410 * 121.80247 * 0.25427 * 27 9 8 29 29 H 1.09002 * 109.47283 * 299.99910 * 1 2 3 30 30 H 1.08999 * 109.47599 * 60.00410 * 1 2 3 31 31 H 1.09006 * 109.47289 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47462 * 239.99913 * 2 1 3 33 33 H 1.08999 * 109.47599 * 119.99590 * 2 1 3 34 34 H 1.08004 * 120.82555 * 0.04862 * 7 6 4 35 35 H 1.07999 * 120.40195 * 180.26618 * 8 7 6 36 36 H 0.96995 * 120.00068 * 3.70898 * 12 10 9 37 37 H 1.08000 * 120.25215 * 359.97438 * 14 13 12 38 38 H 1.08005 * 120.66577 * 179.97438 * 15 14 13 39 39 H 1.07998 * 120.43207 * 180.02562 * 16 15 14 40 40 H 0.96997 * 119.99681 * 354.98891 * 21 20 18 41 41 H 1.08002 * 119.64254 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3493 1.5455 0.0005 5 8 4.0890 0.5824 0.0005 6 6 3.9145 2.9122 0.0000 7 6 5.3001 3.1068 0.0011 8 6 5.7816 4.4047 -0.0043 9 6 4.8778 5.4650 0.0000 10 6 5.3846 6.8586 -0.0006 11 8 6.5810 7.0699 0.0003 12 7 4.5180 7.8908 -0.0021 13 6 4.9917 9.1969 -0.0806 14 6 6.3129 9.4740 0.2792 15 6 6.7829 10.7760 0.2008 16 6 5.9220 11.7675 -0.2352 17 6 4.6036 11.4248 -0.5828 18 6 3.7123 12.4268 -1.0294 19 1 4.0666 13.4356 -1.1820 20 6 2.3702 12.1114 -1.2741 21 7 1.5678 13.0132 -1.7765 22 14 1.7260 10.4022 -0.8828 23 1 0.2843 10.3250 -1.2304 24 1 2.4806 9.3960 -1.6723 25 1 1.9008 10.1271 0.5660 26 7 4.1860 10.1584 -0.4889 27 7 3.5690 5.2440 -0.0010 28 6 3.0720 4.0275 -0.0010 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.9771 2.2654 0.0015 35 1 6.8451 4.5931 -0.0080 36 1 3.5641 7.7233 0.0515 37 1 6.9629 8.6803 0.6165 38 1 7.8008 11.0116 0.4746 39 1 6.2584 12.7911 -0.3075 40 1 1.8824 13.9207 -1.9119 41 1 2.0011 3.8880 -0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361939770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = -67.951162 kcal Electronic energy + Delta-G solvation = -27734.043522 eV Core-core repulsion = 23578.351500 eV Total energy + Delta-G solvation = -4155.692023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.34344 -41.66168 -40.74610 -39.67907 -37.80034 -36.41544 -35.45514 -34.03782 -33.32659 -33.00120 -32.34896 -31.29342 -27.74467 -26.99195 -24.93119 -24.62929 -23.79079 -23.57207 -22.47476 -21.65692 -20.48732 -19.65062 -19.32488 -18.40242 -18.16238 -17.68963 -17.31248 -17.01507 -16.87752 -16.63102 -16.08130 -15.69727 -15.54353 -15.35401 -14.99136 -14.88990 -14.64852 -14.44530 -14.39415 -14.23527 -13.90760 -13.73373 -13.57380 -13.01984 -12.96270 -12.77031 -12.52546 -12.22950 -11.96334 -11.78830 -11.66804 -11.55233 -11.30222 -11.22720 -11.12419 -10.75963 -10.58388 -10.43228 -9.71074 -9.38696 -9.20188 -6.82970 -1.16408 -0.02903 0.45189 0.72019 1.05096 1.39718 1.53716 1.59569 1.67598 1.74701 2.05329 2.45577 2.55247 2.66984 2.71375 3.37748 3.45467 3.53629 3.58674 3.70120 3.78931 4.04496 4.07068 4.07776 4.35703 4.37760 4.53752 4.58522 4.62815 4.68137 4.72944 4.77028 4.87899 4.96627 5.12025 5.18700 5.30976 5.36308 5.38123 5.39999 5.70215 5.75941 5.90023 6.14914 6.38095 6.39992 6.50660 6.62555 6.81608 7.46943 7.94846 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.002640 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.407503 B =10603.088185 C =12423.465248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.351 6.351 4 C 0.524 3.476 5 O -0.521 6.521 6 C -0.158 4.158 7 C -0.003 4.003 8 C -0.108 4.108 9 C 0.102 3.898 10 C 0.572 3.428 11 O -0.517 6.517 12 N -0.634 5.634 13 C 0.368 3.632 14 C -0.306 4.306 15 C -0.026 4.026 16 C -0.287 4.287 17 C 0.256 3.744 18 C -0.506 4.506 19 H 0.071 0.929 20 C 0.015 3.985 21 N -0.828 5.828 22 Si 1.184 2.816 23 H -0.328 1.328 24 H -0.279 1.279 25 H -0.293 1.293 26 N -0.611 5.611 27 N -0.483 5.483 28 C 0.166 3.834 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.422 0.578 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.281 0.719 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -26.882 4.742 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.267 6.267 4 C 0.368 3.632 5 O -0.411 6.411 6 C -0.161 4.161 7 C -0.028 4.028 8 C -0.129 4.129 9 C -0.035 4.035 10 C 0.359 3.641 11 O -0.392 6.392 12 N -0.279 5.279 13 C 0.138 3.862 14 C -0.330 4.330 15 C -0.050 4.050 16 C -0.309 4.309 17 C 0.131 3.869 18 C -0.539 4.539 19 H 0.089 0.911 20 C -0.202 4.202 21 N -0.451 5.451 22 Si 1.017 2.983 23 H -0.261 1.261 24 H -0.207 1.207 25 H -0.221 1.221 26 N -0.337 5.337 27 N -0.194 5.194 28 C 0.005 3.995 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.198 0.802 35 H 0.192 0.808 36 H 0.260 0.740 37 H 0.176 0.824 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.104 -27.311 4.366 27.680 hybrid contribution 2.210 1.225 0.064 2.528 sum 1.106 -26.086 4.431 26.483 Atomic orbital electron populations 1.21854 0.90557 1.04441 1.03855 1.23382 0.96892 0.78278 1.03132 1.86542 1.22284 1.34507 1.83382 1.20785 0.81312 0.88790 0.72312 1.90848 1.61021 1.42694 1.46557 1.20438 0.95404 0.91902 1.08381 1.21998 0.93847 0.97845 0.89109 1.22221 1.02808 0.90701 0.97166 1.21032 0.90595 0.92849 0.98979 1.18285 0.85452 0.84265 0.76104 1.90650 1.15567 1.84258 1.48719 1.43112 1.12187 1.03304 1.69305 1.18462 0.90937 0.83998 0.92849 1.22102 0.96107 0.99043 1.15729 1.21389 0.99199 0.91658 0.92786 1.21822 0.95193 1.00082 1.13778 1.18480 0.92255 0.87761 0.88404 1.20724 0.95828 0.96462 1.40841 0.91097 1.28503 0.93667 1.09194 0.88801 1.70667 1.39930 1.05074 1.29414 0.81460 0.69874 0.69711 0.77292 1.26141 1.20710 1.22068 1.65965 1.37546 1.01661 1.28509 1.67650 1.13512 1.26122 1.12158 1.23568 1.02157 0.84715 0.89046 0.91191 0.91274 0.88183 0.90755 0.90658 0.80194 0.80771 0.73996 0.82367 0.83358 0.86446 0.90769 0.78029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 71.98 0.74 -0.17 16 2 C 0.06 0.58 6.19 71.98 0.45 1.02 16 3 O -0.35 -5.00 9.50 -56.08 -0.53 -5.53 16 4 C 0.52 8.84 7.91 70.38 0.56 9.40 16 5 O -0.52 -10.91 16.20 20.01 0.32 -10.59 16 6 C -0.16 -2.56 5.89 -19.94 -0.12 -2.68 16 7 C 0.00 -0.04 9.71 22.72 0.22 0.18 16 8 C -0.11 -2.00 9.62 22.58 0.22 -1.78 16 9 C 0.10 2.55 6.75 41.95 0.28 2.83 16 10 C 0.57 18.72 7.71 86.92 0.67 19.39 16 11 O -0.52 -18.30 12.97 -3.69 -0.05 -18.35 16 12 N -0.63 -24.04 5.40 -310.61 -1.68 -25.71 16 13 C 0.37 16.64 7.51 133.29 1.00 17.64 16 14 C -0.31 -12.93 8.89 22.72 0.20 -12.73 16 15 C -0.03 -1.07 10.15 22.39 0.23 -0.84 16 16 C -0.29 -13.30 9.83 22.87 0.22 -13.07 16 17 C 0.26 13.53 6.40 40.20 0.26 13.79 16 18 C -0.51 -28.33 9.57 23.47 0.22 -28.11 16 19 H 0.07 4.01 8.05 -2.91 -0.02 3.98 16 20 C 0.02 0.85 5.52 85.29 0.47 1.32 16 21 N -0.83 -46.32 13.65 21.84 0.30 -46.02 16 22 Si 1.18 57.76 25.61 68.60 1.76 59.51 16 23 H -0.33 -15.59 7.11 99.48 0.71 -14.88 16 24 H -0.28 -13.48 6.61 99.48 0.66 -12.83 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 N -0.61 -31.04 4.54 -186.40 -0.85 -31.89 16 27 N -0.48 -11.38 9.52 -183.88 -1.75 -13.13 16 28 C 0.17 2.87 10.78 85.13 0.92 3.79 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.18 1.93 7.73 -2.91 -0.02 1.91 16 35 H 0.17 2.78 7.63 -2.91 -0.02 2.76 16 36 H 0.42 15.14 8.15 -92.71 -0.76 14.38 16 37 H 0.16 6.31 5.17 -9.75 -0.05 6.26 16 38 H 0.15 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 40 H 0.28 15.21 8.72 -92.71 -0.81 14.40 16 41 H 0.20 2.43 7.62 -2.91 -0.02 2.41 16 Total: -1.00 -68.60 360.81 4.29 -64.31 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.22 Total: 17.41 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.54 Total: 9.99 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -3.97 Total: -116.76 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.26 Total: -34.46 kcal Atomic # 14 Polarization: 57.76 SS G_CDS: 1.76 Total: 59.51 kcal Total: -68.60 4.29 -64.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361939770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.641 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds