Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00050 * 2 1 4 4 N 1.34768 * 119.99965 * 179.97438 * 2 1 3 5 5 C 1.39282 * 120.00275 * 185.67268 * 4 2 1 6 6 C 1.39473 * 120.55285 * 25.08502 * 5 4 2 7 7 C 1.38272 * 118.43056 * 180.02562 * 6 5 4 8 8 C 1.38787 * 119.46138 * 0.25447 * 7 6 5 9 9 N 1.31389 * 121.09788 * 359.47261 * 8 7 6 10 10 C 1.32861 * 121.70576 * 0.53760 * 9 8 7 11 11 C 1.47779 * 119.78932 * 179.75126 * 10 9 8 12 12 O 1.21570 * 119.99755 * 185.33974 * 11 10 9 13 13 N 1.34767 * 120.00327 * 5.33898 * 11 10 9 14 14 C 1.39832 * 120.00392 * 174.24487 * 13 11 10 15 15 C 1.38989 * 120.03531 * 333.82222 * 14 13 11 16 16 C 1.38152 * 120.06475 * 179.69831 * 15 14 13 17 17 C 1.38165 * 120.13940 * 0.59343 * 16 15 14 18 18 C 1.38916 * 120.07838 * 359.68493 * 17 16 15 19 19 O 1.35749 * 120.03548 * 179.97438 * 18 17 16 20 20 C 1.34824 * 117.00189 * 185.45288 * 19 18 17 21 21 H 1.08007 * 120.00173 * 5.26018 * 20 19 18 22 22 C 1.38652 * 120.00040 * 185.25575 * 20 19 18 23 23 N 1.31565 * 119.99766 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00315 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47095 * 89.99625 * 24 22 20 26 26 H 1.48493 * 109.47367 * 209.99595 * 24 22 20 27 27 H 1.48500 * 109.46880 * 329.99846 * 24 22 20 28 28 C 1.38732 * 120.04305 * 154.08920 * 14 13 11 29 29 H 1.08996 * 109.47223 * 240.00889 * 1 2 3 30 30 H 1.09000 * 109.46978 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47178 * 120.00658 * 1 2 3 32 32 H 0.97002 * 120.00142 * 5.67783 * 4 2 1 33 33 H 1.07999 * 120.78466 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.27051 * 179.97438 * 7 6 5 35 35 H 1.07991 * 119.45250 * 179.72111 * 8 7 6 36 36 H 0.97002 * 119.99933 * 354.23818 * 13 11 10 37 37 H 1.08008 * 119.96891 * 359.97085 * 15 14 13 38 38 H 1.07999 * 119.93090 * 180.29873 * 16 15 14 39 39 H 1.08003 * 119.96327 * 179.70073 * 17 16 15 40 40 H 0.97001 * 119.99773 * 180.02562 * 23 22 20 41 41 H 1.08004 * 120.06848 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5686 -1.1701 0.1197 6 6 4.2291 -0.1101 0.7405 7 6 5.6078 -0.1580 0.8344 8 6 6.2903 -1.2462 0.3089 9 7 5.6475 -2.2367 -0.2673 10 6 4.3239 -2.2371 -0.3821 11 6 3.6446 -3.3709 -1.0431 12 8 2.4451 -3.3313 -1.2372 13 7 4.3547 -4.4487 -1.4307 14 6 3.6979 -5.5706 -1.9458 15 6 2.3820 -5.8335 -1.5837 16 6 1.7304 -6.9383 -2.0971 17 6 2.3881 -7.7917 -2.9620 18 6 3.7051 -7.5377 -3.3234 19 8 4.3506 -8.3771 -4.1729 20 6 5.6588 -8.1374 -4.3938 21 1 6.1668 -7.3616 -3.8401 22 6 6.3522 -8.8870 -5.3319 23 7 7.6289 -8.6534 -5.5471 24 14 5.4736 -10.2283 -6.2901 25 1 4.9036 -9.6546 -7.5356 26 1 6.4387 -11.3024 -6.6364 27 1 4.3800 -10.7942 -5.4601 28 6 4.3606 -6.4255 -2.8145 29 1 -0.3633 -0.5137 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 1.6994 -2.0052 -0.0822 33 1 3.6768 0.7284 1.1383 34 1 6.1495 0.6469 1.3087 35 1 7.3674 -1.2814 0.3783 36 1 5.3216 -4.4463 -1.3525 37 1 1.8669 -5.1711 -0.9037 38 1 0.7064 -7.1379 -1.8180 39 1 1.8775 -8.6572 -3.3579 40 1 8.1139 -9.1775 -6.2036 41 1 5.3844 -6.2256 -3.0944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362058347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -38.297385 kcal Electronic energy + Delta-G solvation = -28224.725860 eV Core-core repulsion = 24070.319722 eV Total energy + Delta-G solvation = -4154.406138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.51053 -41.38001 -40.52245 -40.02727 -38.24582 -36.46101 -35.59178 -34.41655 -33.52163 -32.26200 -31.08798 -30.49235 -29.73660 -27.25767 -26.05713 -24.87189 -23.54708 -23.43939 -21.94017 -21.51681 -20.12422 -19.46791 -19.07255 -18.98787 -18.23696 -17.48680 -17.12800 -16.94196 -16.63899 -16.39754 -16.18715 -16.04557 -15.70188 -15.54008 -15.44789 -15.00720 -14.75976 -14.65258 -14.25945 -14.21218 -13.97728 -13.77227 -13.41322 -13.37132 -13.19584 -12.88318 -12.71104 -12.49511 -12.26717 -12.07967 -11.57770 -11.46499 -11.45515 -11.16927 -10.86785 -10.82633 -10.47052 -9.53795 -9.38124 -8.91838 -8.49852 -6.22986 -0.63662 0.04267 0.40981 0.64862 1.32959 1.36849 1.43139 1.53354 1.54630 1.76793 1.96131 2.28915 2.69960 2.78810 2.95583 3.08622 3.12195 3.53698 3.58591 3.78493 3.97883 4.06812 4.15848 4.30802 4.37254 4.42099 4.48075 4.58243 4.59368 4.63508 4.77682 4.91932 5.00059 5.04505 5.14710 5.30879 5.32789 5.42638 5.57206 5.62165 5.74967 5.87620 6.17204 6.19932 6.28238 6.63989 6.79270 6.84379 6.94503 7.57052 8.61604 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002578 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.552658 B =10859.619338 C =12126.057496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.507 3.493 3 O -0.563 6.563 4 N -0.655 5.655 5 C 0.159 3.841 6 C -0.113 4.113 7 C -0.101 4.101 8 C 0.076 3.924 9 N -0.456 5.456 10 C 0.011 3.989 11 C 0.578 3.422 12 O -0.535 6.535 13 N -0.642 5.642 14 C 0.178 3.822 15 C -0.195 4.195 16 C -0.048 4.048 17 C -0.202 4.202 18 C 0.142 3.858 19 O -0.239 6.239 20 C -0.399 4.399 21 H 0.081 0.919 22 C 0.011 3.989 23 N -0.922 5.922 24 Si 0.970 3.030 25 H -0.268 1.268 26 H -0.268 1.268 27 H -0.259 1.259 28 C -0.260 4.260 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.430 0.570 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.199 0.801 36 H 0.423 0.577 37 H 0.149 0.851 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.285 0.715 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.484 16.816 16.203 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.442 6.442 4 N -0.305 5.305 5 C 0.057 3.943 6 C -0.141 4.141 7 C -0.121 4.121 8 C -0.087 4.087 9 N -0.167 5.167 10 C -0.128 4.128 11 C 0.367 3.633 12 O -0.413 6.413 13 N -0.284 5.284 14 C 0.083 3.917 15 C -0.216 4.216 16 C -0.066 4.066 17 C -0.221 4.221 18 C 0.092 3.908 19 O -0.146 6.146 20 C -0.475 4.475 21 H 0.098 0.902 22 C -0.188 4.188 23 N -0.563 5.563 24 Si 0.792 3.208 25 H -0.193 1.193 26 H -0.193 1.193 27 H -0.183 1.183 28 C -0.281 4.281 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.276 0.724 33 H 0.180 0.820 34 H 0.202 0.798 35 H 0.216 0.784 36 H 0.261 0.739 37 H 0.166 0.834 38 H 0.183 0.817 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.479 16.606 15.513 25.459 hybrid contribution 0.532 -0.134 -0.433 0.699 sum -10.946 16.472 15.080 24.871 Atomic orbital electron populations 1.21989 0.86668 1.07039 1.06766 1.21982 0.92941 0.81968 0.73279 1.90658 1.71583 1.32499 1.49454 1.44183 1.04254 1.12393 1.69695 1.18864 0.85278 0.95243 0.94919 1.22055 0.95923 0.98337 0.97741 1.22784 0.93533 0.99428 0.96361 1.23417 1.02273 0.88652 0.94376 1.67498 1.06948 1.28733 1.13539 1.20457 0.90737 0.96360 1.05235 1.18060 0.86224 0.81458 0.77558 1.90502 1.14503 1.80140 1.56133 1.43263 1.11938 1.13062 1.60148 1.17596 0.93417 0.86714 0.93923 1.21166 0.93662 1.00865 1.05882 1.21044 1.00239 0.91740 0.93569 1.20598 0.92129 1.04119 1.05290 1.19349 0.92638 0.88829 0.90001 1.83551 1.23785 1.49337 1.57899 1.20679 0.81933 1.21428 1.23486 0.90197 1.25280 0.95795 1.00472 0.97223 1.69734 1.09006 1.42152 1.35406 0.85223 0.78646 0.78176 0.78747 1.19313 1.19259 1.18294 1.20840 1.02244 0.99590 1.05438 0.86337 0.87722 0.87500 0.72380 0.82031 0.79755 0.78444 0.73861 0.83378 0.81664 0.84656 0.90578 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.32 71.24 0.74 -0.83 16 2 C 0.51 9.63 7.75 87.66 0.68 10.30 16 3 O -0.56 -14.11 14.31 -3.02 -0.04 -14.15 16 4 N -0.65 -13.50 4.85 -302.67 -1.47 -14.97 16 5 C 0.16 3.70 6.44 38.69 0.25 3.95 16 6 C -0.11 -2.18 8.81 22.58 0.20 -1.98 16 7 C -0.10 -1.39 10.10 22.41 0.23 -1.17 16 8 C 0.08 1.25 11.17 84.89 0.95 2.19 16 9 N -0.46 -10.95 9.55 -184.55 -1.76 -12.71 16 10 C 0.01 0.28 6.76 41.95 0.28 0.56 16 11 C 0.58 17.32 7.57 86.77 0.66 17.97 16 12 O -0.53 -16.16 11.03 -3.94 -0.04 -16.20 16 13 N -0.64 -20.90 5.35 -306.22 -1.64 -22.54 16 14 C 0.18 6.66 6.40 38.16 0.24 6.90 16 15 C -0.20 -6.45 8.70 22.43 0.20 -6.26 16 16 C -0.05 -1.47 10.03 22.23 0.22 -1.24 16 17 C -0.20 -7.57 9.99 22.41 0.22 -7.35 16 18 C 0.14 6.60 6.65 22.56 0.15 6.75 16 19 O -0.24 -12.83 8.58 -22.66 -0.19 -13.02 16 20 C -0.40 -23.37 9.90 67.92 0.67 -22.70 16 21 H 0.08 4.91 5.52 -2.91 -0.02 4.89 16 22 C 0.01 0.62 5.49 84.83 0.47 1.09 16 23 N -0.92 -54.95 13.96 21.61 0.30 -54.65 16 24 Si 0.97 45.14 28.62 68.60 1.96 47.11 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 28 C -0.26 -11.56 9.03 22.51 0.20 -11.36 16 29 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.43 8.48 6.01 -92.71 -0.56 7.93 16 33 H 0.16 3.13 5.93 -2.91 -0.02 3.11 16 34 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.20 1.85 8.06 -2.92 -0.02 1.83 16 36 H 0.42 13.14 8.12 -92.71 -0.75 12.39 16 37 H 0.15 4.40 5.89 -2.91 -0.02 4.38 16 38 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.11 5.55 5.70 -2.91 -0.02 5.54 16 Total: -1.00 -74.92 354.80 3.29 -71.63 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.18 Total: 32.66 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 6.36 Total: -3.14 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.57 Total: -104.87 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.28 Total: -43.38 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.96 Total: 47.11 kcal Total: -74.92 3.29 -71.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362058347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.328 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds