Wall clock time and date at job start Sat Apr 11 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47122 * 2 1 4 4 C 1.46499 * 119.99913 * 266.19222 * 3 2 1 5 5 C 1.50702 * 109.47377 * 270.00441 * 4 3 2 6 6 H 1.07996 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99935 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00370 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47016 * 119.99513 * 9 7 5 12 12 H 1.48503 * 109.47362 * 239.99950 * 9 7 5 13 13 C 1.34767 * 120.00148 * 86.19824 * 3 2 1 14 14 O 1.21629 * 120.00270 * 184.57259 * 13 3 2 15 15 C 1.47168 * 119.99717 * 4.57057 * 13 3 2 16 16 C 1.38034 * 127.03505 * 258.29884 * 15 13 3 17 17 C 1.39146 * 106.08435 * 179.66353 * 16 15 13 18 18 N 1.31309 * 107.35828 * 0.10904 * 17 16 15 19 19 N 1.28420 * 111.03753 * 359.90087 * 18 17 16 20 20 C 1.46501 * 125.20433 * 180.02562 * 19 18 17 21 21 C 1.50580 * 127.33262 * 180.25073 * 17 16 15 22 22 C 1.52803 * 110.64982 * 340.59985 * 21 17 16 23 23 S 1.81724 * 109.20481 * 53.30548 * 22 21 17 24 24 O 1.42107 * 108.71693 * 47.47184 * 23 22 21 25 25 O 1.42100 * 108.71892 * 178.85757 * 23 22 21 26 26 C 1.50639 * 126.74992 * 359.53251 * 16 15 13 27 27 H 1.08992 * 109.47320 * 184.80901 * 1 2 3 28 28 H 1.09008 * 109.46638 * 304.80577 * 1 2 3 29 29 H 1.08997 * 109.47700 * 64.80057 * 1 2 3 30 30 H 1.09001 * 109.46740 * 240.00162 * 2 1 3 31 31 H 1.08998 * 109.47462 * 120.00189 * 2 1 3 32 32 H 1.08999 * 109.47107 * 30.00253 * 4 3 2 33 33 H 1.09003 * 109.47168 * 150.00280 * 4 3 2 34 34 H 0.96995 * 119.99988 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47486 * 274.97769 * 20 19 18 36 36 H 1.09003 * 109.46865 * 34.97717 * 20 19 18 37 37 H 1.08997 * 109.47077 * 154.97704 * 20 19 18 38 38 H 1.08996 * 109.23892 * 100.89662 * 21 17 16 39 39 H 1.08994 * 109.24180 * 220.29482 * 21 17 16 40 40 H 1.09012 * 109.51325 * 173.21932 * 22 21 17 41 41 H 1.09003 * 109.51845 * 293.38056 * 22 21 17 42 42 H 1.08997 * 109.67339 * 281.82963 * 26 16 15 43 43 H 1.08997 * 109.68286 * 42.37890 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3419 2.0438 -1.2659 5 6 3.7895 1.7983 -1.6058 6 1 4.4067 1.2082 -0.9446 7 6 4.3260 2.3280 -2.7601 8 7 3.5744 3.0470 -3.5650 9 14 6.1204 2.0244 -3.1810 10 1 6.7435 1.1919 -2.1208 11 1 6.2104 1.3167 -4.4835 12 1 6.8340 3.3235 -3.2731 13 6 2.1700 2.0424 1.1645 14 8 2.4954 3.2143 1.1607 15 6 1.9419 1.3462 2.4409 16 6 0.8227 1.4291 3.2447 17 6 1.0652 0.5934 4.3305 18 7 2.2550 0.0647 4.1599 19 7 2.7925 0.4808 3.0704 20 6 4.1151 0.0884 2.5775 21 6 0.1517 0.3231 5.4967 22 6 -0.9006 1.4237 5.6233 23 16 -1.7558 1.6190 4.0318 24 8 -2.1280 0.3337 3.5534 25 8 -2.7494 2.6257 4.1685 26 6 -0.4080 2.2605 2.9932 27 1 -0.3633 -1.0240 0.0861 28 1 -0.3633 0.5866 0.8439 29 1 -0.3634 0.4375 -0.9298 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7097 1.6425 -2.0580 33 1 2.1679 3.1155 -1.1700 34 1 3.9517 3.4193 -4.3773 35 1 4.8756 0.7222 3.0337 36 1 4.3057 -0.9527 2.8381 37 1 4.1481 0.2037 1.4942 38 1 -0.3465 -0.6348 5.3480 39 1 0.7410 0.2824 6.4127 40 1 -1.6223 1.1506 6.3934 41 1 -0.4158 2.3618 5.8937 42 1 -0.2077 3.3001 3.2525 43 1 -0.6894 2.1914 1.9425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362076273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:01 Heat of formation + Delta-G solvation = -46.602865 kcal Electronic energy + Delta-G solvation = -29158.844910 eV Core-core repulsion = 25139.522570 eV Total energy + Delta-G solvation = -4019.322340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.87810 -40.63096 -38.15958 -37.19679 -37.09775 -36.58238 -34.99402 -33.69001 -32.90289 -31.76537 -30.22324 -28.78897 -27.66615 -25.59607 -24.75725 -24.56682 -22.80465 -21.63726 -20.15046 -19.58022 -18.80946 -18.48304 -18.02464 -17.63302 -17.37885 -17.06123 -16.82560 -16.45464 -16.13685 -16.08189 -15.42876 -15.09748 -14.99086 -14.66664 -14.59200 -14.24068 -14.06331 -13.94872 -13.76119 -13.54727 -13.48805 -13.33571 -13.20033 -13.15406 -13.09206 -12.75572 -12.68030 -12.59284 -12.24904 -12.19720 -12.06889 -11.93056 -11.74619 -11.24797 -11.13032 -10.68069 -10.12672 -9.90291 -9.67545 -8.26029 -6.41029 -0.99392 0.41220 0.98015 1.31665 1.37384 1.39310 1.50285 1.60371 1.71087 2.08711 2.38076 2.65133 2.87647 3.05004 3.20062 3.32290 3.48237 3.65911 3.88232 3.92884 3.95487 4.10558 4.13971 4.18690 4.23983 4.40125 4.41585 4.49376 4.65202 4.70627 4.77802 4.83172 4.89191 4.93875 4.95136 5.14011 5.23043 5.32539 5.44907 5.54936 5.72173 5.97731 6.43204 6.66172 6.84195 7.01726 7.30574 8.82153 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.003638 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.201368 B = 7695.053493 C = 8381.438018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.582 5.582 4 C 0.259 3.741 5 C -0.543 4.543 6 H 0.062 0.938 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.284 1.284 13 C 0.578 3.422 14 O -0.571 6.571 15 C -0.007 4.007 16 C -0.161 4.161 17 C 0.020 3.980 18 N -0.270 5.270 19 N -0.266 5.266 20 C 0.076 3.924 21 C -0.021 4.021 22 C -0.572 4.572 23 S 2.437 3.563 24 O -0.956 6.956 25 O -0.970 6.970 26 C -0.541 4.541 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.004 0.996 34 H 0.267 0.733 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.184 0.816 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 -9.724 19.479 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.312 5.312 4 C 0.138 3.862 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.198 1.198 12 H -0.210 1.210 13 C 0.363 3.637 14 O -0.450 6.450 15 C -0.137 4.137 16 C -0.172 4.172 17 C -0.138 4.138 18 N -0.102 5.102 19 N -0.053 5.053 20 C -0.063 4.063 21 C -0.060 4.060 22 C -0.705 4.705 23 S 2.621 3.379 24 O -0.953 6.953 25 O -0.967 6.967 26 C -0.668 4.668 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.150 0.850 40 H 0.202 0.798 41 H 0.180 0.820 42 H 0.173 0.827 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.770 -9.982 19.406 22.573 hybrid contribution 1.297 1.311 -1.433 2.335 sum -4.473 -8.672 17.973 20.451 Atomic orbital electron populations 1.22248 0.94639 1.03826 1.01953 1.21691 0.95375 0.81307 1.03451 1.48269 1.61848 1.14733 1.06312 1.18931 0.95628 0.92217 0.79381 1.21665 0.96133 1.33463 1.06894 0.92026 1.25839 1.02785 0.94338 0.95901 1.70058 1.38139 1.35001 1.13413 0.85364 0.78903 0.77974 0.78555 1.18403 1.19779 1.21048 1.17351 0.77704 0.85654 0.82970 1.90788 1.49004 1.17723 1.87440 1.21203 0.94546 1.00498 0.97490 1.19217 0.95692 1.05025 0.97287 1.22247 0.94496 0.98776 0.98243 1.73142 1.10273 1.22663 1.04117 1.45768 1.15275 1.29802 1.14492 1.22541 0.77766 1.05205 1.00812 1.19601 0.92994 0.98447 0.94952 1.29921 1.11434 1.09606 1.19584 1.07448 0.76150 0.74375 0.79950 1.93552 1.81368 1.40188 1.80193 1.93567 1.55452 1.61213 1.86432 1.28923 1.10772 1.10237 1.16845 0.88815 0.93144 0.92578 0.89107 0.90500 0.95237 0.97781 0.92356 0.88336 0.84965 0.89701 0.86567 0.85035 0.79843 0.81973 0.82702 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.85 10.22 71.98 0.74 -4.12 16 2 C 0.10 3.37 5.94 86.38 0.51 3.88 16 3 N -0.58 -24.32 2.46 -830.34 -2.04 -26.37 16 4 C 0.26 13.42 5.18 85.63 0.44 13.87 16 5 C -0.54 -29.40 9.39 25.60 0.24 -29.16 16 6 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 7 C 0.01 0.60 5.46 84.65 0.46 1.06 16 8 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 9 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 C 0.58 24.50 6.66 86.59 0.58 25.07 16 14 O -0.57 -29.52 16.66 -4.12 -0.07 -29.59 16 15 C -0.01 -0.23 4.99 40.68 0.20 -0.03 16 16 C -0.16 -4.43 5.60 -19.71 -0.11 -4.54 16 17 C 0.02 0.46 6.91 42.82 0.30 0.75 16 18 N -0.27 -6.79 11.91 -47.70 -0.57 -7.36 16 19 N -0.27 -7.46 3.42 -356.24 -1.22 -8.68 16 20 C 0.08 1.72 11.05 127.77 1.41 3.13 16 21 C -0.02 -0.25 5.87 29.74 0.17 -0.08 16 22 C -0.57 -5.23 6.33 71.92 0.46 -4.77 16 23 S 2.44 46.76 5.34 -56.49 -0.30 46.46 16 24 O -0.96 -23.92 17.83 -127.39 -2.27 -26.19 16 25 O -0.97 -24.44 18.11 -127.39 -2.31 -26.75 16 26 C -0.54 -13.06 6.34 71.22 0.45 -12.61 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.05 1.48 6.06 -2.38 -0.01 1.46 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 2.90 8.04 -2.39 -0.02 2.88 16 31 H 0.08 2.21 6.51 -2.39 -0.02 2.20 16 32 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 33 H 0.00 0.24 7.36 -2.39 -0.02 0.23 16 34 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 2.26 7.66 -2.39 -0.02 2.25 16 38 H 0.12 1.22 8.12 -2.39 -0.02 1.20 16 39 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.18 0.39 8.14 -2.38 -0.02 0.37 16 41 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.16 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.13 3.38 6.63 -2.39 -0.02 3.36 16 Total: -1.00 -82.92 369.52 0.42 -82.50 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.03 Total: 12.85 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.85 Total: -7.55 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.54 Total: -96.32 kcal Atomic # 8 Polarization: -77.89 SS G_CDS: -4.65 Total: -82.53 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 46.76 SS G_CDS: -0.30 Total: 46.46 kcal Total: -82.92 0.42 -82.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362076273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.900 kcal (2) G-P(sol) polarization free energy of solvation -82.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds