Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46880 * 2 1 4 4 C 1.53003 * 109.46974 * 239.99842 * 2 1 3 5 5 C 1.53003 * 109.46899 * 174.99742 * 4 2 1 6 6 S 1.81401 * 109.46929 * 179.97438 * 5 4 2 7 7 C 1.81400 * 101.91897 * 180.02562 * 6 5 4 8 8 O 1.42097 * 108.58064 * 294.49062 * 6 5 4 9 9 O 1.42098 * 108.57542 * 65.51665 * 6 5 4 10 10 N 1.46500 * 109.46982 * 119.99918 * 2 1 3 11 11 C 1.34771 * 120.00142 * 274.99802 * 10 2 1 12 12 O 1.21584 * 120.00010 * 0.02562 * 11 10 2 13 13 N 1.34781 * 120.00334 * 180.02562 * 11 10 2 14 14 C 1.39250 * 119.99934 * 184.96075 * 13 11 10 15 15 C 1.39686 * 119.57158 * 174.68017 * 14 13 11 16 16 C 1.38643 * 119.49371 * 179.97438 * 15 14 13 17 17 C 1.38354 * 118.67306 * 359.97438 * 16 15 14 18 18 C 1.40574 * 119.12706 * 0.02562 * 17 16 15 19 19 C 1.41335 * 119.78579 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99915 * 5.23688 * 19 18 17 21 21 C 1.40029 * 120.00213 * 185.23927 * 19 18 17 22 22 N 1.30736 * 119.99830 * 354.77472 * 21 19 18 23 23 Si 1.86796 * 119.99989 * 174.77379 * 21 19 18 24 24 H 1.48503 * 109.47369 * 94.99728 * 23 21 19 25 25 H 1.48504 * 109.47052 * 214.99962 * 23 21 19 26 26 H 1.48499 * 109.47478 * 334.99568 * 23 21 19 27 27 N 1.31900 * 119.57596 * 354.40045 * 14 13 11 28 28 H 1.08998 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46773 * 299.99879 * 1 2 3 30 30 H 1.09002 * 109.46981 * 59.99959 * 1 2 3 31 31 H 1.08998 * 109.47273 * 295.00006 * 4 2 1 32 32 H 1.08999 * 109.46829 * 55.00431 * 4 2 1 33 33 H 1.08998 * 109.47373 * 300.00202 * 5 4 2 34 34 H 1.09007 * 109.46747 * 60.00361 * 5 4 2 35 35 H 1.09000 * 109.47230 * 60.00174 * 7 6 5 36 36 H 1.08999 * 109.46852 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47478 * 300.00042 * 7 6 5 38 38 H 0.97000 * 120.00002 * 95.00339 * 10 2 1 39 39 H 0.97001 * 119.99534 * 5.23000 * 13 11 10 40 40 H 1.08004 * 120.25455 * 359.95032 * 15 14 13 41 41 H 1.08001 * 120.66280 * 180.02562 * 16 15 14 42 42 H 1.07998 * 120.43722 * 179.97438 * 17 16 15 43 43 H 0.96999 * 120.00273 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3137 6 16 4.1696 -1.4691 -2.7944 7 6 5.9615 -1.2176 -2.6670 8 8 3.8968 -2.8570 -2.6583 9 8 3.6954 -0.7781 -3.9420 10 7 2.0183 -0.6906 1.1962 11 6 2.1471 -0.0183 2.3571 12 8 1.8575 1.1613 2.4118 13 7 2.5968 -0.6535 3.4575 14 6 2.6322 0.0122 4.6801 15 6 2.9935 -0.6858 5.8348 16 6 3.0288 -0.0212 7.0511 17 6 2.7029 1.3230 7.0829 18 6 2.3475 1.9693 5.8862 19 6 2.0116 3.3421 5.9026 20 1 2.1098 3.9111 6.8153 21 6 1.5515 3.9644 4.7356 22 7 1.5293 3.3036 3.6077 23 14 0.9696 5.7385 4.7904 24 1 2.0868 6.6381 4.4059 25 1 -0.1596 5.9186 3.8428 26 1 0.5187 6.0694 6.1661 27 7 2.3296 1.2950 4.7319 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1369 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0728 -0.4259 35 1 6.3253 -1.6592 -1.7392 36 1 6.4562 -1.6924 -3.5143 37 1 6.1798 -0.1497 -2.6711 38 1 2.2491 -1.6317 1.1526 39 1 2.8994 -1.5731 3.3970 40 1 3.2431 -1.7352 5.7807 41 1 3.3058 -0.5423 7.9556 42 1 2.7206 1.8684 8.0148 43 1 1.2110 3.7348 2.7992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364147801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -40.331234 kcal Electronic energy + Delta-G solvation = -27679.331506 eV Core-core repulsion = 23660.281125 eV Total energy + Delta-G solvation = -4019.050381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.63354 -37.99421 -37.25179 -36.39997 -36.17081 -34.02046 -32.99277 -32.22871 -30.35291 -30.17652 -29.75643 -28.59549 -25.52408 -24.49928 -22.50409 -21.35449 -20.70291 -19.85843 -19.13798 -18.11718 -17.28458 -16.83858 -16.51841 -16.29397 -16.20703 -15.41528 -14.68789 -14.59546 -14.44423 -14.19312 -13.87846 -13.65912 -13.56023 -13.54337 -13.14365 -12.93710 -12.83723 -12.36606 -12.32657 -12.26887 -12.02061 -11.86878 -11.82874 -11.66910 -11.37311 -11.19172 -11.01202 -10.93718 -10.65044 -10.49169 -10.46686 -9.94252 -9.67613 -9.12365 -9.02397 -8.52456 -7.95225 -7.21361 -6.94503 -6.11947 -4.38554 -0.32616 2.42594 2.83971 3.12564 3.17506 3.19849 3.21748 3.27607 3.30182 3.70384 4.07099 4.17574 4.30278 4.38810 4.43720 4.65442 4.69243 4.79015 4.95095 5.24796 5.26713 5.30859 5.45702 5.56245 5.68746 5.84527 6.02609 6.08831 6.16315 6.42471 6.47882 6.61357 6.79887 6.85359 6.98755 7.24059 7.35862 7.62159 7.74274 7.81873 8.17559 8.30274 8.65835 8.80382 9.06575 9.58667 10.26838 10.49576 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.002967 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.301358 B = 9435.684179 C =10521.218951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.175 3.825 3 H 0.093 0.907 4 C -0.117 4.117 5 C -0.606 4.606 6 S 2.420 3.580 7 C -0.658 4.658 8 O -0.942 6.942 9 O -0.942 6.942 10 N -0.757 5.757 11 C 0.663 3.337 12 O -0.461 6.461 13 N -0.674 5.674 14 C 0.387 3.613 15 C -0.359 4.359 16 C -0.036 4.036 17 C -0.307 4.307 18 C 0.271 3.729 19 C -0.426 4.426 20 H 0.082 0.918 21 C 0.057 3.943 22 N -0.649 5.649 23 Si 0.894 3.106 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.471 5.471 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.383 0.617 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.726 -8.787 -12.760 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.068 3.932 3 H 0.111 0.889 4 C -0.156 4.156 5 C -0.736 4.736 6 S 2.603 3.397 7 C -0.807 4.807 8 O -0.939 6.939 9 O -0.939 6.939 10 N -0.417 5.417 11 C 0.361 3.639 12 O -0.325 6.325 13 N -0.323 5.323 14 C 0.147 3.853 15 C -0.385 4.385 16 C -0.060 4.060 17 C -0.330 4.330 18 C 0.146 3.854 19 C -0.456 4.456 20 H 0.100 0.900 21 C -0.172 4.172 22 N -0.267 5.267 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.190 5.190 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.216 0.784 39 H 0.227 0.773 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.669 -7.565 -14.416 16.689 hybrid contribution 0.866 -0.330 1.434 1.707 sum 4.535 -7.896 -12.983 15.857 Atomic orbital electron populations 1.22219 0.95428 1.01856 1.02926 1.20533 0.93621 0.97255 0.81825 0.88873 1.21676 0.90368 1.03083 1.00515 1.30323 1.07090 1.15331 1.20816 1.07826 0.78279 0.76066 0.77509 1.30275 1.26595 1.12051 1.11780 1.93596 1.83326 1.30211 1.86805 1.93599 1.78547 1.75668 1.46108 1.45431 1.73967 1.12953 1.09371 1.16455 0.80949 0.86420 0.80073 1.91391 1.48949 1.10734 1.81384 1.42584 1.67320 1.15473 1.06891 1.18339 0.93547 0.90980 0.82452 1.20440 1.25822 0.99081 0.93121 1.20547 0.95881 0.94224 0.95373 1.21625 1.17328 0.95238 0.98817 1.18388 0.88116 0.93231 0.85656 1.19570 1.36574 0.93092 0.96390 0.90026 1.26176 0.96142 0.99162 0.95733 1.70348 1.24040 1.34027 0.98305 0.86541 0.78934 0.83524 0.79194 1.19806 1.20308 1.18736 1.68690 1.20853 1.02896 1.26548 0.92829 0.91121 0.92039 0.89814 0.88810 0.84521 0.84775 0.85285 0.85438 0.85276 0.78441 0.77302 0.89206 0.88664 0.88618 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.48 37.16 0.35 -1.69 16 2 C 0.17 2.12 2.57 -67.93 -0.17 1.94 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 C -0.12 -1.02 4.76 -26.73 -0.13 -1.14 16 5 C -0.61 -4.17 5.69 37.16 0.21 -3.96 16 6 S 2.42 17.13 5.36 -107.50 -0.58 16.55 16 7 C -0.66 -2.88 10.62 101.05 1.07 -1.81 16 8 O -0.94 -9.99 18.10 -57.83 -1.05 -11.04 16 9 O -0.94 -10.22 18.10 -57.83 -1.05 -11.27 16 10 N -0.76 -10.08 4.53 -58.67 -0.27 -10.35 16 11 C 0.66 12.78 8.49 -86.92 -0.74 12.04 16 12 O -0.46 -11.19 11.77 5.29 0.06 -11.13 16 13 N -0.67 -12.84 5.39 -15.78 -0.09 -12.92 16 14 C 0.39 9.28 7.43 -154.99 -1.15 8.13 16 15 C -0.36 -7.96 9.96 -38.89 -0.39 -8.34 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.31 -7.70 9.83 -38.66 -0.38 -8.08 16 18 C 0.27 7.58 6.55 -85.00 -0.56 7.03 16 19 C -0.43 -11.66 9.13 -37.73 -0.34 -12.01 16 20 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 21 C 0.06 1.50 5.49 -17.35 -0.10 1.40 16 22 N -0.65 -17.75 9.01 55.55 0.50 -17.25 16 23 Si 0.89 19.13 29.56 -169.99 -5.03 14.10 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 27 N -0.47 -13.09 5.75 -10.26 -0.06 -13.15 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.13 0.80 7.75 -51.92 -0.40 0.39 16 35 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 36 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.13 0.41 8.14 -51.92 -0.42 -0.02 16 38 H 0.38 3.86 8.62 -40.82 -0.35 3.51 16 39 H 0.39 5.69 8.72 -40.82 -0.36 5.33 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.95 8.29 -40.82 -0.34 6.62 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -38.76 375.30 -10.73 -49.49 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.12 Total: 9.01 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.72 Total: -7.71 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.09 Total: -53.66 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -2.03 Total: -33.44 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: 17.13 SS G_CDS: -0.58 Total: 16.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.76 -10.73 -49.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364147801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.155 kcal (2) G-P(sol) polarization free energy of solvation -38.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds