Wall clock time and date at job start Sat Apr 11 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47008 * 2 1 4 4 C 1.53001 * 109.47227 * 240.00418 * 2 1 3 5 5 C 1.52999 * 109.47444 * 175.00037 * 4 2 1 6 6 S 1.81398 * 109.47170 * 179.97438 * 5 4 2 7 7 C 1.81397 * 101.92325 * 180.02562 * 6 5 4 8 8 O 1.42103 * 108.58108 * 294.49057 * 6 5 4 9 9 O 1.42098 * 108.57818 * 65.51083 * 6 5 4 10 10 N 1.46502 * 109.47319 * 120.00480 * 2 1 3 11 11 C 1.34777 * 119.99785 * 274.99830 * 10 2 1 12 12 O 1.21584 * 119.99863 * 0.02562 * 11 10 2 13 13 N 1.34777 * 119.99721 * 179.97438 * 11 10 2 14 14 C 1.39458 * 119.99442 * 175.06043 * 13 11 10 15 15 C 1.38643 * 119.64375 * 174.22454 * 14 13 11 16 16 C 1.40821 * 118.67573 * 179.72371 * 15 14 13 17 17 C 1.41543 * 121.00136 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00434 * 147.46924 * 17 16 15 19 19 C 1.40032 * 119.99782 * 327.46850 * 17 16 15 20 20 N 1.30749 * 119.99828 * 359.81695 * 19 17 16 21 21 Si 1.86803 * 120.00143 * 179.82043 * 19 17 16 22 22 H 1.48502 * 109.47090 * 89.99962 * 21 19 17 23 23 H 1.48497 * 109.46912 * 210.00087 * 21 19 17 24 24 H 1.48492 * 109.46935 * 329.99864 * 21 19 17 25 25 C 1.41160 * 118.00267 * 359.97438 * 16 15 14 26 26 C 1.36594 * 119.13059 * 0.02562 * 25 16 15 27 27 N 1.32061 * 121.25622 * 359.97438 * 26 25 16 28 28 H 1.08999 * 109.46905 * 299.99762 * 1 2 3 29 29 H 1.09002 * 109.47121 * 59.99724 * 1 2 3 30 30 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47275 * 295.00444 * 4 2 1 32 32 H 1.09002 * 109.47016 * 54.99840 * 4 2 1 33 33 H 1.08995 * 109.47143 * 299.99874 * 5 4 2 34 34 H 1.09001 * 109.46672 * 59.99753 * 5 4 2 35 35 H 1.08995 * 109.47147 * 59.99770 * 7 6 5 36 36 H 1.08993 * 109.47284 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.46801 * 300.00324 * 7 6 5 38 38 H 0.97002 * 119.99684 * 94.99250 * 10 2 1 39 39 H 0.96998 * 119.99877 * 355.06779 * 13 11 10 40 40 H 1.08004 * 120.66276 * 359.74179 * 15 14 13 41 41 H 0.97004 * 119.99404 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.43546 * 179.97438 * 25 16 15 43 43 H 1.08000 * 119.36854 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 16 4.1695 -1.4689 -2.7946 7 6 5.9614 -1.2176 -2.6672 8 8 3.8967 -2.8569 -2.6586 9 8 3.6953 -0.7779 -3.9421 10 7 2.0184 -0.6907 1.1961 11 6 2.1471 -0.0184 2.3571 12 8 1.8575 1.1612 2.4119 13 7 2.5959 -0.6540 3.4576 14 6 2.8272 0.0630 4.6312 15 6 3.1728 -0.6132 5.7911 16 6 3.4074 0.1314 6.9631 17 6 3.7625 -0.5085 8.1746 18 1 4.4188 -0.0132 8.8749 19 6 3.2628 -1.7839 8.4653 20 7 2.4654 -2.3821 7.6192 21 14 3.7354 -2.6307 10.0619 22 1 2.7542 -2.2770 11.1190 23 1 3.7371 -4.1019 9.8603 24 1 5.0905 -2.1862 10.4756 25 6 3.2779 1.5354 6.8933 26 6 2.9330 2.1131 5.7046 27 7 2.7202 1.3836 4.6245 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7516 -1.7715 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0728 -0.4260 35 1 6.3252 -1.6592 -1.7395 36 1 6.4561 -1.6923 -3.5145 37 1 6.1797 -0.1496 -2.6711 38 1 2.2490 -1.6319 1.1524 39 1 2.7581 -1.6100 3.4333 40 1 3.2605 -1.6897 5.7957 41 1 2.1196 -3.2657 7.8205 42 1 3.4485 2.1447 7.7685 43 1 2.8325 3.1868 5.6469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364163763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:21 Heat of formation + Delta-G solvation = -63.817960 kcal Electronic energy + Delta-G solvation = -26947.779113 eV Core-core repulsion = 22927.710271 eV Total energy + Delta-G solvation = -4020.068842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.97442 -38.31787 -37.31631 -36.59828 -36.31148 -34.25762 -33.73486 -32.45633 -30.56304 -30.30368 -29.83290 -28.29190 -25.99644 -24.65761 -22.50300 -21.90383 -20.85244 -20.15734 -19.20674 -18.19301 -17.70672 -17.02214 -16.58630 -16.38580 -16.10164 -15.61457 -15.13093 -14.88016 -14.45303 -14.21105 -14.14148 -13.92263 -13.65921 -13.59766 -13.49884 -13.14434 -12.89046 -12.59836 -12.52197 -12.42767 -12.33149 -12.18946 -12.02935 -11.80952 -11.48044 -11.43230 -11.20708 -11.18494 -10.92337 -10.62123 -10.31209 -10.14452 -9.78494 -9.61153 -9.41609 -8.89669 -7.90602 -7.79773 -7.03692 -6.72691 -4.65314 -0.39686 2.35487 2.65878 2.79801 2.96825 3.01311 3.05363 3.21413 3.23106 3.63572 3.81277 3.86854 4.16825 4.29845 4.38714 4.48333 4.55552 4.63394 4.71398 5.10412 5.14957 5.25234 5.27510 5.39329 5.54522 5.63879 5.66419 5.82687 6.00025 6.21709 6.50519 6.57980 6.69520 6.76348 6.94408 7.13014 7.25193 7.38477 7.46769 7.87505 8.09461 8.35423 8.44431 8.70658 8.76300 9.13701 9.66905 10.13782 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.002324 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.411135 B =12042.748072 C =12748.326568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.171 3.829 3 H 0.093 0.907 4 C -0.118 4.118 5 C -0.609 4.609 6 S 2.420 3.580 7 C -0.657 4.657 8 O -0.940 6.940 9 O -0.942 6.942 10 N -0.752 5.752 11 C 0.692 3.308 12 O -0.533 6.533 13 N -0.668 5.668 14 C 0.352 3.648 15 C -0.235 4.235 16 C 0.143 3.857 17 C -0.459 4.459 18 H 0.080 0.920 19 C 0.073 3.927 20 N -0.803 5.803 21 Si 0.917 3.083 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.277 4.277 26 C 0.116 3.884 27 N -0.549 5.549 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.391 0.609 39 H 0.404 0.596 40 H 0.134 0.866 41 H 0.279 0.721 42 H 0.102 0.898 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 -2.302 -16.894 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.065 3.935 3 H 0.111 0.889 4 C -0.157 4.157 5 C -0.739 4.739 6 S 2.603 3.397 7 C -0.807 4.807 8 O -0.938 6.938 9 O -0.939 6.939 10 N -0.410 5.410 11 C 0.392 3.608 12 O -0.404 6.404 13 N -0.316 5.316 14 C 0.125 3.875 15 C -0.261 4.261 16 C 0.134 3.866 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.430 5.430 21 Si 0.742 3.258 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.301 4.301 26 C -0.038 4.038 27 N -0.268 5.268 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.224 0.776 39 H 0.239 0.761 40 H 0.151 0.849 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.276 -1.418 -18.395 18.589 hybrid contribution 1.063 -1.433 2.228 2.854 sum 3.339 -2.852 -16.167 16.752 Atomic orbital electron populations 1.22236 0.95158 1.02269 1.02942 1.20623 0.93828 0.97224 0.81862 0.88870 1.21679 0.90502 1.03262 1.00273 1.30348 1.06981 1.15391 1.21144 1.07838 0.78368 0.76091 0.77432 1.30270 1.26425 1.12057 1.11926 1.93607 1.83330 1.30089 1.86735 1.93600 1.78604 1.75691 1.45982 1.45343 1.73185 1.13423 1.09068 1.16082 0.79151 0.85530 0.80055 1.91007 1.52785 1.13371 1.83234 1.42576 1.68483 1.11062 1.09519 1.17998 0.96418 0.89075 0.83989 1.21701 1.12936 1.01118 0.90315 1.17606 0.86417 0.90410 0.92131 1.19535 1.26697 0.99976 1.02849 0.90150 1.25917 0.93120 0.96727 0.98575 1.69723 1.24358 1.13955 1.34998 0.86167 0.80044 0.78310 0.81311 1.19440 1.20191 1.18571 1.21767 1.13709 0.96181 0.98393 1.21481 0.96190 0.97782 0.88380 1.67166 1.24252 1.04771 1.30593 0.91333 0.91689 0.92433 0.89559 0.88563 0.84509 0.84710 0.85199 0.85330 0.85269 0.77598 0.76148 0.84878 0.90950 0.87937 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.48 37.16 0.35 -1.42 16 2 C 0.17 1.83 2.57 -67.93 -0.17 1.65 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -0.89 4.76 -26.73 -0.13 -1.02 16 5 C -0.61 -3.65 5.69 37.16 0.21 -3.44 16 6 S 2.42 15.77 5.36 -107.50 -0.58 15.19 16 7 C -0.66 -2.55 10.62 101.05 1.07 -1.48 16 8 O -0.94 -9.64 18.10 -57.83 -1.05 -10.69 16 9 O -0.94 -9.55 18.10 -57.83 -1.05 -10.60 16 10 N -0.75 -9.23 4.53 -58.68 -0.27 -9.50 16 11 C 0.69 12.53 8.48 -86.92 -0.74 11.79 16 12 O -0.53 -12.00 14.30 5.29 0.08 -11.93 16 13 N -0.67 -12.60 5.40 -15.86 -0.09 -12.69 16 14 C 0.35 8.33 7.40 -154.68 -1.15 7.19 16 15 C -0.23 -5.83 8.60 -38.46 -0.33 -6.16 16 16 C 0.14 3.70 5.57 -106.55 -0.59 3.11 16 17 C -0.46 -11.65 9.12 -37.65 -0.34 -11.99 16 18 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 19 C 0.07 1.76 5.41 -17.34 -0.09 1.67 16 20 N -0.80 -19.71 10.69 55.55 0.59 -19.12 16 21 Si 0.92 17.96 29.56 -169.99 -5.02 12.93 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 C -0.28 -6.69 9.85 -39.07 -0.38 -7.07 16 26 C 0.12 2.74 11.10 -18.05 -0.20 2.54 16 27 N -0.55 -13.78 7.90 -12.76 -0.10 -13.89 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.13 0.70 7.75 -51.92 -0.40 0.30 16 35 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 38 H 0.39 3.64 8.62 -40.82 -0.35 3.28 16 39 H 0.40 6.16 8.72 -40.82 -0.36 5.80 16 40 H 0.13 3.29 6.25 -52.48 -0.33 2.97 16 41 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 42 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 43 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -37.65 378.37 -10.30 -47.94 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.03 Total: 11.28 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.49 Total: -4.64 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.14 Total: -55.19 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -2.02 Total: -33.22 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.93 kcal Atomic # 16 Polarization: 15.77 SS G_CDS: -0.58 Total: 15.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.65 -10.30 -47.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364163763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.875 kcal (2) G-P(sol) polarization free energy of solvation -37.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds