Wall clock time and date at job start Sat Apr 11 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81403 * 109.47472 * 2 1 4 4 O 1.42098 * 108.57690 * 65.51245 * 3 2 1 5 5 O 1.42097 * 108.57550 * 294.48789 * 3 2 1 6 6 C 1.81394 * 101.92099 * 179.97438 * 3 2 1 7 7 C 1.52997 * 109.47443 * 179.97438 * 6 3 2 8 8 H 1.09005 * 109.46696 * 305.00433 * 7 6 3 9 9 C 1.52993 * 109.47544 * 185.00207 * 7 6 3 10 10 N 1.46504 * 109.47062 * 64.99619 * 7 6 3 11 11 C 1.34769 * 120.00359 * 205.00404 * 10 7 6 12 12 O 1.21584 * 119.99840 * 359.97438 * 11 10 7 13 13 N 1.34776 * 120.00317 * 180.02562 * 11 10 7 14 14 C 1.39466 * 120.00039 * 175.45378 * 13 11 10 15 15 C 1.38642 * 119.64545 * 186.28663 * 14 13 11 16 16 C 1.40814 * 118.67366 * 179.97438 * 15 14 13 17 17 C 1.41546 * 120.99904 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99828 * 201.14335 * 17 16 15 19 19 C 1.40026 * 120.00097 * 21.14556 * 17 16 15 20 20 N 1.30739 * 119.99859 * 12.11028 * 19 17 16 21 21 Si 1.86797 * 120.00200 * 192.11357 * 19 17 16 22 22 H 1.48504 * 109.47060 * 59.99854 * 21 19 17 23 23 H 1.48502 * 109.47386 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47142 * 300.00207 * 21 19 17 25 25 C 1.41169 * 118.00424 * 0.02562 * 16 15 14 26 26 C 1.36586 * 119.12810 * 0.02562 * 25 16 15 27 27 N 1.32067 * 121.25764 * 359.74345 * 26 25 16 28 28 H 1.09007 * 109.47242 * 300.00394 * 1 2 3 29 29 H 1.09003 * 109.47048 * 59.99898 * 1 2 3 30 30 H 1.08993 * 109.47667 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46919 * 239.99717 * 2 1 3 32 32 H 1.09003 * 109.47048 * 120.00102 * 2 1 3 33 33 H 1.09002 * 109.47143 * 59.99994 * 6 3 2 34 34 H 1.08999 * 109.47665 * 300.00246 * 6 3 2 35 35 H 1.09000 * 109.47421 * 60.00071 * 9 7 6 36 36 H 1.08999 * 109.47253 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.47308 * 299.99850 * 9 7 6 38 38 H 0.97004 * 119.99839 * 25.00930 * 10 7 6 39 39 H 0.96998 * 119.99931 * 355.45473 * 13 11 10 40 40 H 1.08003 * 120.66443 * 0.02562 * 15 14 13 41 41 H 0.96998 * 120.00292 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.43607 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.36889 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9329 1.4718 0.0008 7 6 4.6282 2.8347 0.0002 8 1 4.2684 3.4257 -0.8421 9 6 6.1400 2.6360 -0.1249 10 7 4.3296 3.5357 1.2515 11 6 4.3801 4.8816 1.2985 12 8 4.6739 5.5141 0.3026 13 7 4.1059 5.5265 2.4498 14 6 4.2500 6.9117 2.5246 15 6 4.0934 7.5527 3.7439 16 6 4.2439 8.9518 3.7960 17 6 4.0942 9.6562 5.0146 18 1 3.8719 10.7131 5.0036 19 6 4.2343 8.9828 6.2343 20 7 4.7314 7.7739 6.2603 21 14 3.7110 9.8118 7.8244 22 1 2.2638 10.1387 7.7592 23 1 3.9600 8.8951 8.9659 24 1 4.4925 11.0605 8.0121 25 6 4.5476 9.6309 2.5963 26 6 4.6821 8.9134 1.4419 27 7 4.5385 7.6006 1.4303 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 4.2260 0.9145 -0.8890 34 1 4.2253 0.9148 0.8909 35 1 6.3622 2.1145 -1.0559 36 1 6.6353 3.6070 -0.1248 37 1 6.4998 2.0450 0.7174 38 1 4.0956 3.0311 2.0462 39 1 3.8083 5.0273 3.2264 40 1 3.8614 6.9900 4.6361 41 1 4.8281 7.3073 7.1051 42 1 4.6711 10.7039 2.5912 43 1 4.9140 9.4291 0.5217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365071621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:30 Heat of formation + Delta-G solvation = -59.707921 kcal Electronic energy + Delta-G solvation = -27513.158872 eV Core-core repulsion = 23493.268255 eV Total energy + Delta-G solvation = -4019.890617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86750 -38.16558 -37.17021 -36.29326 -35.99084 -34.19022 -33.66777 -33.55535 -31.41242 -30.37859 -28.32504 -28.03964 -25.95110 -24.51460 -22.65934 -21.80753 -20.98257 -20.09117 -19.12530 -18.14361 -17.62214 -17.27149 -16.65936 -16.32659 -15.85976 -15.50780 -15.03452 -14.85071 -14.62158 -14.24187 -14.09810 -13.70451 -13.57804 -13.39902 -13.14009 -13.04059 -12.90178 -12.76192 -12.54998 -12.27851 -12.22989 -12.16605 -12.12124 -11.96883 -11.41327 -11.32926 -11.13404 -11.06819 -10.83813 -10.59502 -10.25155 -10.05100 -9.70816 -9.53420 -9.32735 -8.91686 -7.91779 -7.65602 -6.92323 -6.69457 -4.57357 -0.35661 2.45902 2.76587 2.87513 2.95947 3.03289 3.06627 3.31853 3.33012 3.68558 3.87660 3.89597 4.12217 4.21268 4.23129 4.55243 4.63966 4.75799 4.77394 4.94203 5.17647 5.18567 5.21988 5.23379 5.53635 5.57003 5.78032 5.80143 6.03775 6.13929 6.59927 6.64500 6.71978 6.88073 6.99800 7.23813 7.32864 7.51597 7.57343 7.94401 8.17308 8.44197 8.53740 8.80099 8.81998 9.23119 9.82332 10.11652 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.002714 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.113335 B =10315.841398 C =11132.441732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.620 4.620 3 S 2.415 3.585 4 O -0.922 6.922 5 O -0.930 6.930 6 C -0.626 4.626 7 C 0.177 3.823 8 H 0.104 0.896 9 C -0.156 4.156 10 N -0.759 5.759 11 C 0.696 3.304 12 O -0.531 6.531 13 N -0.664 5.664 14 C 0.354 3.646 15 C -0.249 4.249 16 C 0.140 3.860 17 C -0.449 4.449 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.791 5.791 21 Si 0.915 3.085 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.286 4.286 26 C 0.119 3.881 27 N -0.554 5.554 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.397 0.603 39 H 0.406 0.594 40 H 0.140 0.860 41 H 0.281 0.719 42 H 0.100 0.900 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -20.368 -6.456 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.748 4.748 3 S 2.596 3.404 4 O -0.919 6.919 5 O -0.927 6.927 6 C -0.755 4.755 7 C 0.070 3.930 8 H 0.122 0.878 9 C -0.215 4.215 10 N -0.419 5.419 11 C 0.396 3.604 12 O -0.402 6.402 13 N -0.311 5.311 14 C 0.128 3.872 15 C -0.275 4.275 16 C 0.131 3.869 17 C -0.481 4.481 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.417 5.417 21 Si 0.740 3.260 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.310 4.310 26 C -0.035 4.035 27 N -0.273 5.273 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.232 0.768 39 H 0.241 0.759 40 H 0.157 0.843 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.006 -19.685 -8.063 21.483 hybrid contribution 0.067 -0.738 2.409 2.521 sum -2.939 -20.423 -5.653 21.393 Atomic orbital electron populations 1.21512 0.90312 1.04759 1.03996 1.30295 1.07738 1.25494 1.11270 1.08366 0.78114 0.77987 0.75972 1.93609 1.80628 1.72427 1.45258 1.93613 1.80727 1.72727 1.45647 1.30721 1.25785 1.06672 1.12327 1.20256 0.96284 0.87832 0.88604 0.87762 1.22155 0.94222 1.03363 1.01796 1.45440 1.77385 1.05857 1.13223 1.16005 0.79011 0.80955 0.84476 1.91015 1.51405 1.64809 1.32935 1.42512 1.69308 1.06195 1.13096 1.17997 0.96681 0.81716 0.90817 1.21785 1.13947 0.96116 0.95636 1.17575 0.85940 0.91146 0.92217 1.19574 1.42108 0.96745 0.89642 0.90120 1.25975 0.92242 0.94697 1.01456 1.69731 1.31410 1.11930 1.28632 0.86254 0.80304 0.79839 0.79647 1.18764 1.20290 1.18940 1.21637 1.15011 0.99434 0.94889 1.21456 0.96482 0.89111 0.96410 1.67193 1.23356 1.08187 1.28554 0.90640 0.90789 0.90172 0.85194 0.85084 0.83579 0.84399 0.91601 0.90766 0.92247 0.76833 0.75925 0.84277 0.90805 0.88139 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.92 37.16 0.37 -0.54 16 2 C -0.62 -3.03 6.52 37.16 0.24 -2.79 16 3 S 2.42 22.29 4.64 -107.50 -0.50 21.79 16 4 O -0.92 -11.87 16.90 -57.83 -0.98 -12.85 16 5 O -0.93 -12.67 18.10 -57.83 -1.05 -13.72 16 6 C -0.63 -4.09 5.33 37.16 0.20 -3.90 16 7 C 0.18 2.10 2.57 -67.93 -0.17 1.93 16 8 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 9 C -0.16 -1.65 9.48 37.15 0.35 -1.30 16 10 N -0.76 -11.02 4.16 -58.68 -0.24 -11.27 16 11 C 0.70 14.26 8.49 -86.93 -0.74 13.52 16 12 O -0.53 -12.98 14.27 5.29 0.08 -12.91 16 13 N -0.66 -14.09 5.40 -15.86 -0.09 -14.18 16 14 C 0.35 9.04 7.42 -154.68 -1.15 7.90 16 15 C -0.25 -6.55 8.67 -38.46 -0.33 -6.88 16 16 C 0.14 3.78 5.65 -106.55 -0.60 3.17 16 17 C -0.45 -11.76 9.15 -37.65 -0.34 -12.10 16 18 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 19 C 0.07 1.82 5.31 -17.35 -0.09 1.73 16 20 N -0.79 -19.63 10.50 55.55 0.58 -19.05 16 21 Si 0.92 18.18 29.58 -169.99 -5.03 13.16 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 C -0.29 -7.24 9.85 -39.07 -0.38 -7.63 16 26 C 0.12 2.99 11.10 -18.05 -0.20 2.79 16 27 N -0.55 -14.87 7.86 -12.76 -0.10 -14.97 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 0.33 8.14 -51.92 -0.42 -0.10 16 33 H 0.15 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.14 0.47 8.14 -51.92 -0.42 0.04 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 4.62 8.22 -40.82 -0.34 4.28 16 39 H 0.41 7.22 8.72 -40.82 -0.36 6.86 16 40 H 0.14 3.62 5.81 -52.48 -0.30 3.32 16 41 H 0.28 6.31 8.29 -40.82 -0.34 5.98 16 42 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 43 H 0.12 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -38.45 376.22 -10.52 -48.97 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.01 Total: 13.45 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.86 Total: -4.10 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.15 Total: -59.46 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.95 Total: -39.47 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: 22.29 SS G_CDS: -0.50 Total: 21.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.45 -10.52 -48.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.740 kcal (2) G-P(sol) polarization free energy of solvation -38.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds