Wall clock time and date at job start Sat Apr 11 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81403 * 109.47472 * 2 1 4 4 O 1.42098 * 108.57690 * 65.51245 * 3 2 1 5 5 O 1.42097 * 108.57550 * 294.48789 * 3 2 1 6 6 C 1.81394 * 101.92099 * 179.97438 * 3 2 1 7 7 C 1.52997 * 109.47443 * 179.97438 * 6 3 2 8 8 H 1.09005 * 109.46696 * 305.00433 * 7 6 3 9 9 C 1.52993 * 109.47544 * 185.00207 * 7 6 3 10 10 N 1.46504 * 109.47062 * 64.99619 * 7 6 3 11 11 C 1.34769 * 120.00359 * 205.00404 * 10 7 6 12 12 O 1.21584 * 119.99840 * 359.97438 * 11 10 7 13 13 N 1.34776 * 120.00317 * 180.02562 * 11 10 7 14 14 C 1.39466 * 120.00039 * 175.45378 * 13 11 10 15 15 C 1.38642 * 119.64545 * 186.28663 * 14 13 11 16 16 C 1.40814 * 118.67366 * 179.97438 * 15 14 13 17 17 C 1.41546 * 120.99904 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99828 * 201.14335 * 17 16 15 19 19 C 1.40026 * 120.00097 * 21.14556 * 17 16 15 20 20 N 1.30739 * 119.99859 * 12.11028 * 19 17 16 21 21 Si 1.86797 * 120.00200 * 192.11357 * 19 17 16 22 22 H 1.48504 * 109.47060 * 59.99854 * 21 19 17 23 23 H 1.48502 * 109.47386 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47142 * 300.00207 * 21 19 17 25 25 C 1.41169 * 118.00424 * 0.02562 * 16 15 14 26 26 C 1.36586 * 119.12810 * 0.02562 * 25 16 15 27 27 N 1.32067 * 121.25764 * 359.74345 * 26 25 16 28 28 H 1.09007 * 109.47242 * 300.00394 * 1 2 3 29 29 H 1.09003 * 109.47048 * 59.99898 * 1 2 3 30 30 H 1.08993 * 109.47667 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46919 * 239.99717 * 2 1 3 32 32 H 1.09003 * 109.47048 * 120.00102 * 2 1 3 33 33 H 1.09002 * 109.47143 * 59.99994 * 6 3 2 34 34 H 1.08999 * 109.47665 * 300.00246 * 6 3 2 35 35 H 1.09000 * 109.47421 * 60.00071 * 9 7 6 36 36 H 1.08999 * 109.47253 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.47308 * 299.99850 * 9 7 6 38 38 H 0.97004 * 119.99839 * 25.00930 * 10 7 6 39 39 H 0.96998 * 119.99931 * 355.45473 * 13 11 10 40 40 H 1.08003 * 120.66443 * 0.02562 * 15 14 13 41 41 H 0.96998 * 120.00292 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.43607 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.36889 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9329 1.4718 0.0008 7 6 4.6282 2.8347 0.0002 8 1 4.2684 3.4257 -0.8421 9 6 6.1400 2.6360 -0.1249 10 7 4.3296 3.5357 1.2515 11 6 4.3801 4.8816 1.2985 12 8 4.6739 5.5141 0.3026 13 7 4.1059 5.5265 2.4498 14 6 4.2500 6.9117 2.5246 15 6 4.0934 7.5527 3.7439 16 6 4.2439 8.9518 3.7960 17 6 4.0942 9.6562 5.0146 18 1 3.8719 10.7131 5.0036 19 6 4.2343 8.9828 6.2343 20 7 4.7314 7.7739 6.2603 21 14 3.7110 9.8118 7.8244 22 1 2.2638 10.1387 7.7592 23 1 3.9600 8.8951 8.9659 24 1 4.4925 11.0605 8.0121 25 6 4.5476 9.6309 2.5963 26 6 4.6821 8.9134 1.4419 27 7 4.5385 7.6006 1.4303 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 4.2260 0.9145 -0.8890 34 1 4.2253 0.9148 0.8909 35 1 6.3622 2.1145 -1.0559 36 1 6.6353 3.6070 -0.1248 37 1 6.4998 2.0450 0.7174 38 1 4.0956 3.0311 2.0462 39 1 3.8083 5.0273 3.2264 40 1 3.8614 6.9900 4.6361 41 1 4.8281 7.3073 7.1051 42 1 4.6711 10.7039 2.5912 43 1 4.9140 9.4291 0.5217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365071621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:29 Heat of formation + Delta-G solvation = -89.658615 kcal Electronic energy + Delta-G solvation = -27514.457632 eV Core-core repulsion = 23493.268255 eV Total energy + Delta-G solvation = -4021.189377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49360 -39.94647 -37.98902 -37.41973 -36.93346 -36.05106 -35.50160 -33.99234 -32.73948 -32.27526 -30.05210 -28.85003 -27.92329 -25.09545 -24.10412 -23.73411 -22.29709 -21.69908 -19.94922 -19.62401 -19.44444 -17.97411 -17.89930 -17.33602 -17.00451 -16.85127 -16.51673 -16.31673 -16.02369 -15.91941 -15.20461 -15.11250 -14.79919 -14.54617 -14.37221 -14.30289 -14.10151 -13.78820 -13.63703 -13.39025 -13.14124 -13.07035 -13.04092 -12.99510 -12.85118 -12.66853 -12.36424 -12.23681 -12.03543 -11.91274 -11.78519 -11.52984 -11.31094 -11.17869 -11.16914 -10.21252 -9.92503 -9.62192 -8.83157 -8.57631 -6.57242 -0.99354 0.84367 1.02969 1.41872 1.53496 1.56629 1.61019 1.87458 2.20753 2.24265 2.68290 2.84961 3.04342 3.18612 3.41960 3.77566 3.79090 3.87450 3.99681 4.15047 4.15942 4.37308 4.42365 4.63166 4.71190 4.73543 4.74507 4.86019 4.86127 4.91115 4.96458 5.11371 5.12042 5.26495 5.27818 5.43994 5.52161 5.66635 5.82119 5.99720 6.26672 6.57746 6.80155 6.84347 6.95143 7.58651 7.90624 8.27796 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.002714 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.113335 B =10315.841398 C =11132.441732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.585 4.585 3 S 2.386 3.614 4 O -0.976 6.976 5 O -0.993 6.993 6 C -0.603 4.603 7 C 0.160 3.840 8 H 0.070 0.930 9 C -0.151 4.151 10 N -0.738 5.738 11 C 0.690 3.310 12 O -0.577 6.577 13 N -0.661 5.661 14 C 0.349 3.651 15 C -0.267 4.267 16 C 0.110 3.890 17 C -0.477 4.477 18 H 0.085 0.915 19 C 0.035 3.965 20 N -0.811 5.811 21 Si 0.993 3.007 22 H -0.261 1.261 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.298 4.298 26 C 0.112 3.888 27 N -0.583 5.583 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.193 0.807 34 H 0.184 0.816 35 H 0.097 0.903 36 H 0.031 0.969 37 H 0.083 0.917 38 H 0.413 0.587 39 H 0.419 0.581 40 H 0.137 0.863 41 H 0.292 0.708 42 H 0.117 0.883 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -23.640 -5.191 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.718 4.718 3 S 2.574 3.426 4 O -0.973 6.973 5 O -0.990 6.990 6 C -0.733 4.733 7 C 0.055 3.945 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.398 5.398 11 C 0.390 3.610 12 O -0.451 6.451 13 N -0.310 5.310 14 C 0.122 3.878 15 C -0.293 4.293 16 C 0.102 3.898 17 C -0.508 4.508 18 H 0.103 0.897 19 C -0.182 4.182 20 N -0.436 5.436 21 Si 0.813 3.187 22 H -0.185 1.185 23 H -0.188 1.188 24 H -0.184 1.184 25 C -0.322 4.322 26 C -0.041 4.041 27 N -0.303 5.303 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.184 0.816 32 H 0.187 0.813 33 H 0.210 0.790 34 H 0.201 0.799 35 H 0.116 0.884 36 H 0.051 0.949 37 H 0.102 0.898 38 H 0.251 0.749 39 H 0.256 0.744 40 H 0.155 0.845 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.587 -22.985 -6.797 24.108 hybrid contribution -0.051 0.127 1.990 1.995 sum -2.639 -22.858 -4.807 23.507 Atomic orbital electron populations 1.21701 0.91512 1.06107 1.03072 1.30014 1.06512 1.20240 1.14999 1.08710 0.79576 0.80313 0.73956 1.93545 1.82020 1.75403 1.46329 1.93541 1.82285 1.75893 1.47292 1.30555 1.21830 1.04020 1.16914 1.20548 0.98052 0.89932 0.86014 0.91164 1.22124 0.92415 1.01870 1.04599 1.45318 1.75712 1.03702 1.15114 1.16259 0.78610 0.82713 0.83462 1.90972 1.53423 1.66419 1.34298 1.42455 1.69293 1.05025 1.14186 1.18234 0.95785 0.83366 0.90438 1.21777 1.15506 0.96240 0.95805 1.18031 0.86516 0.91918 0.93375 1.19892 1.43148 0.97278 0.90459 0.89697 1.26893 0.91483 0.95269 1.04554 1.69764 1.30613 1.12953 1.30317 0.85091 0.79718 0.78898 0.75021 1.18500 1.18821 1.18379 1.21823 1.15465 1.00285 0.94664 1.21905 0.95753 0.88980 0.97467 1.67311 1.24671 1.09033 1.29266 0.91737 0.91975 0.87456 0.81558 0.81295 0.78988 0.79853 0.88402 0.94940 0.89808 0.74939 0.74354 0.84534 0.89656 0.86529 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.92 71.98 0.71 -0.97 16 2 C -0.59 -3.29 6.52 71.98 0.47 -2.82 16 3 S 2.39 41.52 4.64 -56.49 -0.26 41.26 16 4 O -0.98 -25.51 16.90 -127.37 -2.15 -27.67 16 5 O -0.99 -28.23 18.10 -127.37 -2.31 -30.53 16 6 C -0.60 -5.64 5.33 71.98 0.38 -5.25 16 7 C 0.16 3.65 2.57 44.99 0.12 3.76 16 8 H 0.07 2.11 7.58 -2.38 -0.02 2.09 16 9 C -0.15 -2.91 9.48 71.98 0.68 -2.23 16 10 N -0.74 -21.48 4.16 -457.83 -1.90 -23.39 16 11 C 0.69 29.46 8.49 179.06 1.52 30.98 16 12 O -0.58 -29.80 14.27 -3.98 -0.06 -29.85 16 13 N -0.66 -29.23 5.40 -322.37 -1.74 -30.97 16 14 C 0.35 18.61 7.42 132.76 0.98 19.60 16 15 C -0.27 -14.61 8.67 23.00 0.20 -14.41 16 16 C 0.11 6.14 5.65 -21.11 -0.12 6.02 16 17 C -0.48 -25.38 9.15 23.52 0.22 -25.17 16 18 H 0.08 4.29 7.88 -2.91 -0.02 4.26 16 19 C 0.03 1.69 5.31 85.29 0.45 2.14 16 20 N -0.81 -40.30 10.50 21.84 0.23 -40.07 16 21 Si 0.99 36.53 29.58 68.60 2.03 38.56 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 23 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 25 C -0.30 -15.60 9.85 22.60 0.22 -15.38 16 26 C 0.11 5.81 11.10 84.27 0.94 6.75 16 27 N -0.58 -32.63 7.86 -194.27 -1.53 -34.16 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.17 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.17 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.19 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.18 0.11 8.14 -2.39 -0.02 0.10 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.41 9.23 8.22 -92.71 -0.76 8.47 16 39 H 0.42 15.46 8.72 -92.71 -0.81 14.65 16 40 H 0.14 7.37 5.81 -2.91 -0.02 7.35 16 41 H 0.29 12.93 8.29 -92.71 -0.77 12.16 16 42 H 0.12 5.52 8.06 -2.91 -0.02 5.50 16 43 H 0.15 6.57 8.06 -2.91 -0.02 6.55 16 Total: -1.00 -91.88 376.22 -1.43 -93.31 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -0.52 Total: 40.50 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 6.78 Total: 3.02 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -4.94 Total: -128.59 kcal Atomic # 8 Polarization: -83.54 SS G_CDS: -4.51 Total: -88.05 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 16 Polarization: 41.52 SS G_CDS: -0.26 Total: 41.26 kcal Total: -91.88 -1.43 -93.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.650 kcal (2) G-P(sol) polarization free energy of solvation -91.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds