Wall clock time and date at job start Sat Apr 11 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46837 * 2 1 4 4 C 1.52994 * 109.47215 * 119.99731 * 2 1 3 5 5 S 1.81405 * 109.47150 * 185.00171 * 4 2 1 6 6 C 1.81402 * 101.92120 * 180.02562 * 5 4 2 7 7 O 1.42101 * 108.57689 * 294.48673 * 5 4 2 8 8 O 1.42101 * 108.57716 * 65.51290 * 5 4 2 9 9 N 1.46502 * 109.46854 * 240.00041 * 2 1 3 10 10 C 1.46491 * 120.00277 * 299.99262 * 9 2 1 11 11 C 1.34777 * 119.99772 * 120.00009 * 9 2 1 12 12 O 1.21585 * 120.00334 * 359.97438 * 11 9 2 13 13 N 1.34774 * 120.00285 * 179.97438 * 11 9 2 14 14 C 1.39460 * 120.00664 * 184.62706 * 13 11 9 15 15 C 1.38640 * 119.64892 * 174.67269 * 14 13 11 16 16 C 1.40820 * 118.67133 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99668 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99639 * 198.66216 * 17 16 15 19 19 C 1.40022 * 120.00165 * 18.65901 * 17 16 15 20 20 N 1.30747 * 119.99839 * 19.03191 * 19 17 16 21 21 Si 1.86796 * 120.00398 * 199.03089 * 19 17 16 22 22 H 1.48501 * 109.47155 * 89.99929 * 21 19 17 23 23 H 1.48497 * 109.47335 * 210.00173 * 21 19 17 24 24 H 1.48505 * 109.47002 * 330.00608 * 21 19 17 25 25 C 1.41169 * 118.00662 * 0.02562 * 16 15 14 26 26 C 1.36594 * 119.12677 * 359.97438 * 25 16 15 27 27 N 1.32064 * 121.25590 * 359.74737 * 26 25 16 28 28 H 1.09000 * 109.47097 * 60.00315 * 1 2 3 29 29 H 1.09007 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47028 * 300.00177 * 1 2 3 31 31 H 1.08994 * 109.47488 * 305.00132 * 4 2 1 32 32 H 1.09004 * 109.47067 * 65.00453 * 4 2 1 33 33 H 1.09002 * 109.46815 * 59.99791 * 6 5 4 34 34 H 1.09000 * 109.46928 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.46916 * 300.00156 * 6 5 4 36 36 H 1.08994 * 109.47503 * 270.00861 * 10 9 2 37 37 H 1.09002 * 109.46962 * 30.00883 * 10 9 2 38 38 H 1.09004 * 109.47100 * 150.00022 * 10 9 2 39 39 H 0.97005 * 119.99553 * 4.89609 * 13 11 9 40 40 H 1.07999 * 120.66681 * 359.97438 * 15 14 13 41 41 H 0.97004 * 119.99875 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.43338 * 180.02562 * 25 16 15 43 43 H 1.07999 * 119.36982 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 16 3.8480 -0.5931 1.3256 6 6 4.2236 -1.4990 2.8517 7 8 4.3992 -1.3078 0.2281 8 8 4.1977 0.7717 1.5109 9 7 2.0183 -0.6906 -1.1962 10 6 1.6646 -2.0931 -1.4280 11 6 2.7932 -0.0356 -2.0834 12 8 3.0866 1.1286 -1.8912 13 7 3.2428 -0.6710 -3.1836 14 6 4.1223 -0.0246 -4.0518 15 6 4.6669 -0.7207 -5.1200 16 6 5.5521 -0.0477 -5.9840 17 6 6.1369 -0.7109 -7.0893 18 1 7.0206 -0.3033 -7.5578 19 6 5.5698 -1.8953 -7.5754 20 7 4.3318 -2.1959 -7.2815 21 14 6.5819 -3.0458 -8.6437 22 1 7.2866 -4.0292 -7.7825 23 1 5.6856 -3.7645 -9.5845 24 1 7.5784 -2.2583 -9.4132 25 6 5.8397 1.3077 -5.7141 26 6 5.2544 1.9098 -4.6367 27 7 4.4242 1.2496 -3.8500 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6055 -0.2617 2.1369 32 1 1.7518 -1.7715 1.2056 33 1 3.8710 -2.5264 2.7605 34 1 5.3007 -1.4983 3.0188 35 1 3.7248 -1.0170 3.6925 36 1 2.4158 -2.7376 -0.9717 37 1 0.6905 -2.3002 -0.9847 38 1 1.6239 -2.2852 -2.5002 39 1 2.9517 -1.5766 -3.3737 40 1 4.4172 -1.7582 -5.2861 41 1 3.9388 -3.0163 -7.6185 42 1 6.5129 1.8616 -6.3516 43 1 5.4720 2.9465 -4.4263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366309421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:47 Heat of formation + Delta-G solvation = -69.259668 kcal Electronic energy + Delta-G solvation = -28480.984183 eV Core-core repulsion = 24460.679371 eV Total energy + Delta-G solvation = -4020.304812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63177 -40.02505 -37.93703 -37.66360 -36.88047 -36.13272 -35.64588 -33.26474 -32.38285 -30.51123 -30.10385 -28.60508 -27.94028 -27.81418 -24.25235 -23.77905 -22.26178 -20.69129 -19.72916 -19.66218 -19.32605 -17.84717 -17.50731 -17.35622 -17.14721 -16.89810 -16.52559 -16.34802 -16.04294 -15.84507 -14.96779 -14.84902 -14.75529 -14.34338 -14.32732 -14.12193 -13.95655 -13.90645 -13.76021 -13.43885 -13.16792 -13.07413 -13.00253 -12.95048 -12.92921 -12.88538 -12.63969 -12.08029 -12.00322 -11.90715 -11.84288 -11.52514 -11.27936 -11.20493 -11.13197 -9.98258 -9.75067 -9.58433 -8.84229 -8.62365 -6.56034 -0.91744 0.85272 1.01690 1.41178 1.52865 1.54894 1.60085 1.93642 2.20308 2.26386 2.80877 2.84068 2.89381 3.13904 3.54074 3.79341 3.91304 4.03687 4.07207 4.17047 4.22132 4.24459 4.44862 4.59770 4.65392 4.71063 4.80752 4.85117 4.89193 4.91375 4.92477 5.02753 5.10497 5.24439 5.29289 5.50959 5.56351 5.67548 5.78000 5.94339 6.23208 6.55645 6.78805 6.82315 6.87331 7.58102 7.92982 8.24453 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003157 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.992273 B = 8866.155733 C = 8960.792132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.151 3.849 3 H 0.076 0.924 4 C -0.600 4.600 5 S 2.376 3.624 6 C -0.631 4.631 7 O -0.981 6.981 8 O -0.999 6.999 9 N -0.631 5.631 10 C 0.059 3.941 11 C 0.692 3.308 12 O -0.581 6.581 13 N -0.658 5.658 14 C 0.351 3.649 15 C -0.273 4.273 16 C 0.113 3.887 17 C -0.479 4.479 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.804 5.804 21 Si 0.991 3.009 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.258 1.258 25 C -0.303 4.303 26 C 0.113 3.887 27 N -0.586 5.586 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.189 0.811 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.131 0.869 41 H 0.294 0.706 42 H 0.116 0.884 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 -9.572 19.276 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.046 3.954 3 H 0.094 0.906 4 C -0.732 4.732 5 S 2.565 3.435 6 C -0.784 4.784 7 O -0.979 6.979 8 O -0.997 6.997 9 N -0.370 5.370 10 C -0.082 4.082 11 C 0.393 3.607 12 O -0.456 6.456 13 N -0.308 5.308 14 C 0.124 3.876 15 C -0.299 4.299 16 C 0.105 3.895 17 C -0.509 4.509 18 H 0.103 0.897 19 C -0.179 4.179 20 N -0.428 5.428 21 Si 0.811 3.189 22 H -0.186 1.186 23 H -0.187 1.187 24 H -0.182 1.182 25 C -0.327 4.327 26 C -0.040 4.040 27 N -0.306 5.306 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.206 0.794 32 H 0.197 0.803 33 H 0.179 0.821 34 H 0.144 0.856 35 H 0.178 0.822 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.256 0.744 40 H 0.149 0.851 41 H 0.105 0.895 42 H 0.134 0.866 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.359 -8.038 19.565 23.552 hybrid contribution 0.451 -1.223 -1.065 1.683 sum -9.908 -9.261 18.499 22.938 Atomic orbital electron populations 1.22078 0.90206 1.04616 1.03384 1.20738 0.97926 0.95978 0.80753 0.90600 1.30596 1.22228 1.13466 1.06952 1.08604 0.80568 0.75576 0.78706 1.30079 1.12958 1.16189 1.19185 1.93571 1.77441 1.74737 1.52106 1.93546 1.83185 1.35596 1.87338 1.47299 1.53068 1.13821 1.22851 1.22141 1.03624 0.79681 1.02771 1.16254 0.79294 0.84662 0.80498 1.90982 1.61583 1.16466 1.76613 1.42549 1.47000 1.18319 1.22915 1.18253 0.90772 0.89770 0.88802 1.21597 1.09038 1.01391 0.97844 1.17992 0.89149 0.90893 0.91494 1.19910 1.11600 1.07231 1.12206 0.89694 1.26898 0.95296 0.98714 0.96966 1.69815 1.12939 1.23500 1.36576 0.85075 0.78667 0.77488 0.77701 1.18608 1.18700 1.18183 1.21782 1.10826 0.96272 1.03778 1.21893 0.92388 0.98859 0.90895 1.67321 1.21948 1.08327 1.33043 0.93582 0.88851 0.88415 0.79354 0.80271 0.82060 0.85581 0.82208 0.90948 0.86202 0.91695 0.74437 0.85114 0.89469 0.86583 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.17 71.98 0.66 -1.37 16 2 C 0.15 3.43 2.64 44.99 0.12 3.55 16 3 H 0.08 2.41 6.90 -2.38 -0.02 2.40 16 4 C -0.60 -7.17 5.22 71.98 0.38 -6.79 16 5 S 2.38 54.92 5.28 -56.49 -0.30 54.63 16 6 C -0.63 -5.58 10.62 113.37 1.20 -4.37 16 7 O -0.98 -33.32 16.74 -127.37 -2.13 -35.45 16 8 O -1.00 -35.27 18.10 -127.37 -2.31 -37.57 16 9 N -0.63 -18.59 1.80 -840.63 -1.51 -20.10 16 10 C 0.06 1.13 9.21 127.77 1.18 2.31 16 11 C 0.69 30.72 7.72 179.06 1.38 32.10 16 12 O -0.58 -31.61 13.93 -3.99 -0.06 -31.67 16 13 N -0.66 -30.36 5.27 -322.37 -1.70 -32.06 16 14 C 0.35 19.50 7.42 132.76 0.98 20.49 16 15 C -0.27 -15.33 8.69 23.00 0.20 -15.13 16 16 C 0.11 6.47 5.65 -21.11 -0.12 6.35 16 17 C -0.48 -25.96 9.13 23.52 0.21 -25.74 16 18 H 0.08 4.39 7.92 -2.91 -0.02 4.37 16 19 C 0.04 1.93 5.20 85.29 0.44 2.37 16 20 N -0.80 -40.13 10.73 21.84 0.23 -39.89 16 21 Si 0.99 36.69 29.60 68.60 2.03 38.72 16 22 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 23 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 24 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 25 C -0.30 -16.37 9.85 22.61 0.22 -16.15 16 26 C 0.11 6.11 11.10 84.27 0.94 7.05 16 27 N -0.59 -34.35 7.86 -194.27 -1.53 -35.87 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.73 6.66 -2.38 -0.02 0.71 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.19 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.18 0.54 7.51 -2.39 -0.02 0.52 16 33 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.16 0.37 8.14 -2.39 -0.02 0.36 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.12 1.13 6.43 -2.39 -0.02 1.11 16 38 H 0.06 1.33 6.30 -2.38 -0.02 1.31 16 39 H 0.42 16.02 6.39 -92.70 -0.59 15.42 16 40 H 0.13 7.20 5.91 -2.91 -0.02 7.18 16 41 H 0.29 12.93 8.29 -92.71 -0.77 12.16 16 42 H 0.12 5.69 8.06 -2.91 -0.02 5.67 16 43 H 0.14 6.83 8.06 -2.91 -0.02 6.81 16 Total: -1.00 -98.29 367.65 0.99 -97.29 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.46 Total: 37.31 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 7.80 Total: 4.66 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -4.50 Total: -127.92 kcal Atomic # 8 Polarization: -100.20 SS G_CDS: -4.49 Total: -104.69 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.30 Total: 54.63 kcal Total: -98.29 0.99 -97.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366309421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.033 kcal (2) G-P(sol) polarization free energy of solvation -98.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds