Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46669 * 2 1 4 4 C 1.52996 * 109.47065 * 119.99471 * 2 1 3 5 5 S 1.81391 * 109.47179 * 185.00274 * 4 2 1 6 6 C 1.81404 * 101.92468 * 180.02562 * 5 4 2 7 7 O 1.42101 * 108.58070 * 294.49093 * 5 4 2 8 8 O 1.42098 * 108.58068 * 65.51176 * 5 4 2 9 9 N 1.46499 * 109.47172 * 239.99738 * 2 1 3 10 10 C 1.46496 * 119.99749 * 300.00074 * 9 2 1 11 11 C 1.34775 * 119.99934 * 119.99709 * 9 2 1 12 12 O 1.21582 * 119.99786 * 0.02562 * 11 9 2 13 13 N 1.34769 * 119.99995 * 179.97438 * 11 9 2 14 14 C 1.39244 * 120.00276 * 185.07689 * 13 11 9 15 15 C 1.39682 * 119.58099 * 174.54808 * 14 13 11 16 16 C 1.38642 * 119.49761 * 179.97438 * 15 14 13 17 17 C 1.38351 * 118.67479 * 359.97438 * 16 15 14 18 18 C 1.40579 * 119.12776 * 0.02562 * 17 16 15 19 19 C 1.41325 * 119.78588 * 179.97438 * 18 17 16 20 20 H 1.08008 * 120.00310 * 0.02562 * 19 18 17 21 21 C 1.40023 * 120.00133 * 179.97438 * 19 18 17 22 22 N 1.30744 * 119.99969 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00315 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47089 * 90.00185 * 23 21 19 25 25 H 1.48500 * 109.46797 * 210.00120 * 23 21 19 26 26 H 1.48496 * 109.46815 * 330.00141 * 23 21 19 27 27 N 1.31910 * 119.57432 * 354.26949 * 14 13 11 28 28 H 1.08996 * 109.47245 * 300.00048 * 1 2 3 29 29 H 1.09001 * 109.47070 * 60.00501 * 1 2 3 30 30 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47271 * 305.00265 * 4 2 1 32 32 H 1.09002 * 109.47426 * 64.99906 * 4 2 1 33 33 H 1.09001 * 109.46941 * 59.99826 * 6 5 4 34 34 H 1.08995 * 109.47010 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46975 * 300.00396 * 6 5 4 36 36 H 1.09000 * 109.46781 * 269.99606 * 10 9 2 37 37 H 1.08996 * 109.47812 * 29.99673 * 10 9 2 38 38 H 1.09003 * 109.47092 * 150.00651 * 10 9 2 39 39 H 0.97003 * 120.00339 * 5.08104 * 13 11 9 40 40 H 1.08001 * 120.25135 * 359.97438 * 15 14 13 41 41 H 1.08005 * 120.66523 * 180.02562 * 16 15 14 42 42 H 1.07999 * 120.43850 * 179.97438 * 17 16 15 43 43 H 0.97004 * 120.00369 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 16 3.8478 -0.5931 1.3257 6 6 4.2235 -1.4989 2.8519 7 8 4.3992 -1.3077 0.2283 8 8 4.1976 0.7717 1.5109 9 7 2.0184 -0.6907 -1.1961 10 6 1.6645 -2.0932 -1.4278 11 6 2.7932 -0.0357 -2.0833 12 8 3.0872 1.1282 -1.8907 13 7 3.2429 -0.6712 -3.1834 14 6 4.1283 -0.0292 -4.0453 15 6 4.6777 -0.7333 -5.1193 16 6 5.5587 -0.0923 -5.9767 17 6 5.8679 1.2353 -5.7400 18 6 5.2819 1.8890 -4.6420 19 6 5.5884 3.2449 -4.3869 20 1 6.2705 3.7756 -5.0348 21 6 5.0069 3.9006 -3.2949 22 7 4.1808 3.2585 -2.5109 23 14 5.4114 5.6930 -2.9581 24 1 4.4453 6.5620 -3.6769 25 1 5.3222 5.9548 -1.4991 26 1 6.7882 5.9869 -3.4305 27 7 4.4332 1.2377 -3.8403 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -0.2616 2.1370 32 1 1.7517 -1.7714 1.2058 33 1 3.8710 -2.5263 2.7607 34 1 5.3006 -1.4982 3.0190 35 1 3.7246 -1.0169 3.6926 36 1 2.4158 -2.7376 -0.9715 37 1 0.6905 -2.3003 -0.9845 38 1 1.6240 -2.2853 -2.5000 39 1 2.9497 -1.5758 -3.3749 40 1 4.4183 -1.7692 -5.2806 41 1 5.9943 -0.6186 -6.8133 42 1 6.5510 1.7622 -6.3896 43 1 3.7777 3.7128 -1.7546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414490059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -14.082938 kcal Electronic energy + Delta-G solvation = -29358.831814 eV Core-core repulsion = 25340.919644 eV Total energy + Delta-G solvation = -4017.912170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78961 -37.93181 -36.75829 -36.04520 -35.70742 -34.00931 -33.02427 -31.88253 -30.13018 -29.78799 -28.64260 -27.79167 -26.62007 -25.37372 -22.71696 -21.27353 -20.63907 -18.94495 -18.62982 -18.14691 -17.00267 -16.63851 -16.27576 -15.97726 -15.83879 -15.16894 -14.93472 -14.50314 -14.29207 -13.68497 -13.53995 -13.43168 -13.35811 -13.17801 -13.01299 -12.91429 -12.65500 -12.48710 -12.21859 -12.00553 -11.83409 -11.79228 -11.73098 -11.70318 -11.09015 -11.03384 -10.86502 -10.81394 -10.50908 -10.37961 -10.31491 -9.78701 -9.55618 -8.99893 -8.88135 -8.23923 -7.80189 -7.06509 -6.78875 -5.95459 -4.23874 0.01571 2.82255 2.98201 3.07113 3.26294 3.28786 3.31629 3.40545 3.75934 4.01028 4.20477 4.24117 4.47316 4.50986 4.61136 4.65918 4.98174 5.07563 5.13603 5.15734 5.30216 5.32202 5.44052 5.57279 5.62193 5.80483 5.95740 6.08033 6.20482 6.22942 6.56925 6.66806 6.93354 6.95525 6.99506 7.33211 7.45175 7.75581 7.84573 7.95654 8.29944 8.40989 8.73314 8.93691 9.21379 9.65761 10.42919 10.65769 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.004922 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.761205 B = 5686.975317 C = 6771.765630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.171 3.829 3 H 0.121 0.879 4 C -0.628 4.628 5 S 2.417 3.583 6 C -0.670 4.670 7 O -0.914 6.914 8 O -0.921 6.921 9 N -0.646 5.646 10 C 0.076 3.924 11 C 0.673 3.327 12 O -0.457 6.457 13 N -0.666 5.666 14 C 0.388 3.612 15 C -0.358 4.358 16 C -0.036 4.036 17 C -0.308 4.308 18 C 0.272 3.728 19 C -0.426 4.426 20 H 0.081 0.919 21 C 0.056 3.944 22 N -0.645 5.645 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.264 1.264 27 N -0.471 5.471 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.395 0.605 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.040 -11.969 12.207 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.065 3.935 3 H 0.139 0.861 4 C -0.758 4.758 5 S 2.596 3.404 6 C -0.817 4.817 7 O -0.911 6.911 8 O -0.919 6.919 9 N -0.389 5.389 10 C -0.068 4.068 11 C 0.373 3.627 12 O -0.321 6.321 13 N -0.314 5.314 14 C 0.148 3.852 15 C -0.384 4.384 16 C -0.060 4.060 17 C -0.331 4.331 18 C 0.147 3.853 19 C -0.456 4.456 20 H 0.099 0.901 21 C -0.174 4.174 22 N -0.264 5.264 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.203 1.203 26 H -0.189 1.189 27 N -0.189 5.189 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.713 -10.144 12.731 18.463 hybrid contribution -0.208 -0.996 0.101 1.023 sum -8.921 -11.140 12.832 19.192 Atomic orbital electron populations 1.22076 0.93890 1.02128 1.02891 1.20336 0.95138 0.97767 0.80293 0.86146 1.30839 1.27072 1.10370 1.07506 1.08195 0.78461 0.76621 0.77109 1.30459 1.12262 1.15305 1.23670 1.93630 1.75135 1.74534 1.47825 1.93646 1.81026 1.31272 1.85910 1.47400 1.55722 1.12029 1.23746 1.21664 1.00371 0.83093 1.01667 1.16322 0.79999 0.85828 0.80586 1.91406 1.55672 1.11592 1.73407 1.42586 1.47680 1.17564 1.23620 1.18347 0.88709 0.91144 0.86960 1.20406 1.14123 0.99689 1.04200 1.20515 0.95028 0.94290 0.96156 1.21596 1.10942 0.95838 1.04772 1.18379 0.87203 0.93047 0.86715 1.19550 1.22606 0.94220 1.09235 0.90095 1.26179 0.95519 0.99253 0.96429 1.70314 1.14128 1.34218 1.07711 0.86573 0.79743 0.83783 0.78176 1.19810 1.20271 1.18857 1.68681 1.17799 1.03718 1.28707 0.91490 0.91334 0.92337 0.84457 0.85175 0.85804 0.85520 0.85823 0.92545 0.91490 0.91636 0.77015 0.89279 0.88758 0.88713 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.17 37.16 0.34 -1.16 16 2 C 0.17 2.29 2.64 -67.93 -0.18 2.11 16 3 H 0.12 2.04 6.90 -51.93 -0.36 1.68 16 4 C -0.63 -5.83 5.22 37.16 0.19 -5.64 16 5 S 2.42 32.39 5.28 -107.50 -0.57 31.82 16 6 C -0.67 -5.18 10.62 101.05 1.07 -4.11 16 7 O -0.91 -16.14 16.74 -57.83 -0.97 -17.11 16 8 O -0.92 -17.18 18.10 -57.83 -1.05 -18.23 16 9 N -0.65 -10.17 1.80 -179.68 -0.32 -10.49 16 10 C 0.08 0.84 9.21 59.84 0.55 1.39 16 11 C 0.67 14.83 7.72 -86.93 -0.67 14.16 16 12 O -0.46 -12.25 11.43 5.29 0.06 -12.19 16 13 N -0.67 -14.53 5.26 -15.79 -0.08 -14.62 16 14 C 0.39 10.21 7.43 -154.99 -1.15 9.06 16 15 C -0.36 -8.60 9.95 -38.89 -0.39 -8.98 16 16 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 17 C -0.31 -8.19 9.83 -38.66 -0.38 -8.57 16 18 C 0.27 8.06 6.55 -85.00 -0.56 7.50 16 19 C -0.43 -12.33 9.14 -37.74 -0.34 -12.68 16 20 H 0.08 2.19 7.85 -52.48 -0.41 1.78 16 21 C 0.06 1.56 5.50 -17.35 -0.10 1.47 16 22 N -0.65 -19.02 8.99 55.55 0.50 -18.52 16 23 Si 0.89 20.41 29.56 -169.99 -5.02 15.38 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.26 -5.91 7.11 56.52 0.40 -5.50 16 27 N -0.47 -14.06 5.74 -10.26 -0.06 -14.12 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.46 6.66 -51.93 -0.35 0.11 16 31 H 0.14 0.79 8.14 -51.92 -0.42 0.36 16 32 H 0.13 0.78 7.51 -51.92 -0.39 0.39 16 33 H 0.12 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.53 6.43 -51.93 -0.33 0.19 16 38 H 0.07 0.69 6.29 -51.93 -0.33 0.36 16 39 H 0.39 6.85 6.39 -40.82 -0.26 6.59 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 42 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.27 7.59 8.29 -40.82 -0.34 7.26 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -41.31 364.83 -9.81 -51.12 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.79 Total: 8.15 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.01 Total: -6.70 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.03 Total: -57.74 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -1.95 Total: -47.53 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 32.39 SS G_CDS: -0.57 Total: 31.82 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -41.31 -9.81 -51.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.035 kcal (2) G-P(sol) polarization free energy of solvation -41.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds