Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46669 * 2 1 4 4 C 1.52996 * 109.47065 * 119.99471 * 2 1 3 5 5 S 1.81391 * 109.47179 * 185.00274 * 4 2 1 6 6 C 1.81404 * 101.92468 * 180.02562 * 5 4 2 7 7 O 1.42101 * 108.58070 * 294.49093 * 5 4 2 8 8 O 1.42098 * 108.58068 * 65.51176 * 5 4 2 9 9 N 1.46499 * 109.47172 * 239.99738 * 2 1 3 10 10 C 1.46496 * 119.99749 * 300.00074 * 9 2 1 11 11 C 1.34775 * 119.99934 * 119.99709 * 9 2 1 12 12 O 1.21582 * 119.99786 * 0.02562 * 11 9 2 13 13 N 1.34769 * 119.99995 * 179.97438 * 11 9 2 14 14 C 1.39244 * 120.00276 * 185.07689 * 13 11 9 15 15 C 1.39682 * 119.58099 * 174.54808 * 14 13 11 16 16 C 1.38642 * 119.49761 * 179.97438 * 15 14 13 17 17 C 1.38351 * 118.67479 * 359.97438 * 16 15 14 18 18 C 1.40579 * 119.12776 * 0.02562 * 17 16 15 19 19 C 1.41325 * 119.78588 * 179.97438 * 18 17 16 20 20 H 1.08008 * 120.00310 * 0.02562 * 19 18 17 21 21 C 1.40023 * 120.00133 * 179.97438 * 19 18 17 22 22 N 1.30744 * 119.99969 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00315 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47089 * 90.00185 * 23 21 19 25 25 H 1.48500 * 109.46797 * 210.00120 * 23 21 19 26 26 H 1.48496 * 109.46815 * 330.00141 * 23 21 19 27 27 N 1.31910 * 119.57432 * 354.26949 * 14 13 11 28 28 H 1.08996 * 109.47245 * 300.00048 * 1 2 3 29 29 H 1.09001 * 109.47070 * 60.00501 * 1 2 3 30 30 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47271 * 305.00265 * 4 2 1 32 32 H 1.09002 * 109.47426 * 64.99906 * 4 2 1 33 33 H 1.09001 * 109.46941 * 59.99826 * 6 5 4 34 34 H 1.08995 * 109.47010 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46975 * 300.00396 * 6 5 4 36 36 H 1.09000 * 109.46781 * 269.99606 * 10 9 2 37 37 H 1.08996 * 109.47812 * 29.99673 * 10 9 2 38 38 H 1.09003 * 109.47092 * 150.00651 * 10 9 2 39 39 H 0.97003 * 120.00339 * 5.08104 * 13 11 9 40 40 H 1.08001 * 120.25135 * 359.97438 * 15 14 13 41 41 H 1.08005 * 120.66523 * 180.02562 * 16 15 14 42 42 H 1.07999 * 120.43850 * 179.97438 * 17 16 15 43 43 H 0.97004 * 120.00369 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 16 3.8478 -0.5931 1.3257 6 6 4.2235 -1.4989 2.8519 7 8 4.3992 -1.3077 0.2283 8 8 4.1976 0.7717 1.5109 9 7 2.0184 -0.6907 -1.1961 10 6 1.6645 -2.0932 -1.4278 11 6 2.7932 -0.0357 -2.0833 12 8 3.0872 1.1282 -1.8907 13 7 3.2429 -0.6712 -3.1834 14 6 4.1283 -0.0292 -4.0453 15 6 4.6777 -0.7333 -5.1193 16 6 5.5587 -0.0923 -5.9767 17 6 5.8679 1.2353 -5.7400 18 6 5.2819 1.8890 -4.6420 19 6 5.5884 3.2449 -4.3869 20 1 6.2705 3.7756 -5.0348 21 6 5.0069 3.9006 -3.2949 22 7 4.1808 3.2585 -2.5109 23 14 5.4114 5.6930 -2.9581 24 1 4.4453 6.5620 -3.6769 25 1 5.3222 5.9548 -1.4991 26 1 6.7882 5.9869 -3.4305 27 7 4.4332 1.2377 -3.8403 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -0.2616 2.1370 32 1 1.7517 -1.7714 1.2058 33 1 3.8710 -2.5263 2.7607 34 1 5.3006 -1.4982 3.0190 35 1 3.7246 -1.0169 3.6926 36 1 2.4158 -2.7376 -0.9715 37 1 0.6905 -2.3003 -0.9845 38 1 1.6240 -2.2853 -2.5000 39 1 2.9497 -1.5758 -3.3749 40 1 4.4183 -1.7692 -5.2806 41 1 5.9943 -0.6186 -6.8133 42 1 6.5510 1.7622 -6.3896 43 1 3.7777 3.7128 -1.7546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414490059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -46.415392 kcal Electronic energy + Delta-G solvation = -29360.233854 eV Core-core repulsion = 25340.919644 eV Total energy + Delta-G solvation = -4019.314210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34775 -39.74769 -37.90756 -37.45283 -36.84060 -35.89115 -34.93174 -33.14061 -32.16408 -30.65666 -30.40272 -28.58270 -27.70577 -27.37875 -24.34109 -23.22089 -22.19881 -20.40018 -19.84923 -19.68607 -18.71444 -18.00615 -17.54574 -17.19191 -17.01309 -16.51592 -16.33077 -16.26828 -16.11415 -15.58770 -14.81422 -14.69927 -14.55146 -14.25447 -14.12204 -13.93920 -13.83131 -13.69860 -13.61800 -13.37077 -12.98947 -12.96634 -12.90630 -12.88033 -12.84853 -12.70645 -12.53699 -12.28919 -12.03096 -11.80840 -11.75869 -11.49397 -11.24562 -10.84682 -10.76048 -9.87283 -9.50790 -9.07361 -8.74459 -7.99374 -6.39346 -0.90404 0.98935 1.30731 1.36786 1.51557 1.52842 1.72323 1.96125 2.27072 2.57405 2.88349 3.05995 3.08215 3.16717 3.59583 3.95685 4.04174 4.10097 4.14496 4.24402 4.31258 4.36116 4.48798 4.60677 4.69675 4.76282 4.83009 4.85420 4.88432 4.93690 4.97952 5.07302 5.09496 5.28729 5.31812 5.65771 5.76151 5.87326 5.94159 6.02153 6.26221 6.42977 6.84482 7.07540 7.16696 8.01426 8.41571 8.61062 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.004922 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.761205 B = 5686.975317 C = 6771.765630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.154 3.846 3 H 0.069 0.931 4 C -0.598 4.598 5 S 2.374 3.626 6 C -0.633 4.633 7 O -0.978 6.978 8 O -1.002 7.002 9 N -0.637 5.637 10 C 0.064 3.936 11 C 0.661 3.339 12 O -0.515 6.515 13 N -0.659 5.659 14 C 0.362 3.638 15 C -0.348 4.348 16 C -0.032 4.032 17 C -0.331 4.331 18 C 0.235 3.765 19 C -0.466 4.466 20 H 0.087 0.913 21 C 0.005 3.995 22 N -0.683 5.683 23 Si 0.973 3.027 24 H -0.260 1.260 25 H -0.278 1.278 26 H -0.253 1.253 27 N -0.507 5.507 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.164 0.836 34 H 0.125 0.875 35 H 0.158 0.842 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.414 0.586 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.105 0.895 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 -15.131 13.948 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.730 4.730 5 S 2.563 3.437 6 C -0.786 4.786 7 O -0.975 6.975 8 O -0.999 6.999 9 N -0.379 5.379 10 C -0.078 4.078 11 C 0.360 3.640 12 O -0.383 6.383 13 N -0.310 5.310 14 C 0.122 3.878 15 C -0.373 4.373 16 C -0.056 4.056 17 C -0.354 4.354 18 C 0.110 3.890 19 C -0.497 4.497 20 H 0.105 0.895 21 C -0.221 4.221 22 N -0.302 5.302 23 Si 0.794 3.206 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.177 1.177 27 N -0.226 5.226 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.201 0.799 32 H 0.198 0.802 33 H 0.182 0.818 34 H 0.143 0.857 35 H 0.176 0.824 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.253 0.747 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.712 -13.366 14.436 22.401 hybrid contribution 0.313 -0.302 -0.384 0.581 sum -10.399 -13.669 14.052 22.191 Atomic orbital electron populations 1.22038 0.90541 1.04407 1.02994 1.20580 0.97573 0.95834 0.81113 0.91315 1.30570 1.22003 1.13370 1.07090 1.08663 0.80733 0.75544 0.78731 1.30103 1.12897 1.16287 1.19310 1.93551 1.77413 1.74674 1.51868 1.93559 1.83247 1.35812 1.87327 1.47326 1.53957 1.13623 1.22967 1.22050 1.03006 0.80089 1.02661 1.16698 0.80414 0.85648 0.81194 1.91387 1.57842 1.14353 1.74673 1.42502 1.46991 1.18226 1.23324 1.18927 0.89554 0.90897 0.88383 1.20903 1.12497 1.01332 1.02617 1.21009 0.94207 0.93410 0.97022 1.21792 1.11699 0.97367 1.04564 1.18925 0.88051 0.94046 0.88007 1.19887 1.24192 0.94992 1.10662 0.89493 1.27118 0.95026 1.04193 0.95744 1.70570 1.15587 1.35965 1.08064 0.85361 0.80062 0.77445 0.77768 1.18493 1.20338 1.17657 1.68662 1.18632 1.05681 1.29664 0.88998 0.93813 0.88752 0.79890 0.80223 0.81828 0.85654 0.82368 0.91490 0.86965 0.91382 0.74732 0.85174 0.84285 0.87640 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.17 71.98 0.66 -1.75 16 2 C 0.15 4.04 2.64 44.99 0.12 4.16 16 3 H 0.07 2.55 6.90 -2.39 -0.02 2.53 16 4 C -0.60 -9.13 5.22 71.98 0.38 -8.75 16 5 S 2.37 63.93 5.28 -56.49 -0.30 63.63 16 6 C -0.63 -7.43 10.62 113.37 1.20 -6.23 16 7 O -0.98 -35.99 16.74 -127.37 -2.13 -38.12 16 8 O -1.00 -40.79 18.10 -127.37 -2.31 -43.10 16 9 N -0.64 -19.90 1.80 -840.64 -1.51 -21.41 16 10 C 0.06 1.22 9.21 127.77 1.18 2.40 16 11 C 0.66 30.64 7.72 179.06 1.38 32.02 16 12 O -0.51 -30.01 11.43 -3.97 -0.05 -30.06 16 13 N -0.66 -29.61 5.26 -322.13 -1.69 -31.30 16 14 C 0.36 19.69 7.43 133.26 0.99 20.68 16 15 C -0.35 -16.43 9.95 22.72 0.23 -16.21 16 16 C -0.03 -1.52 10.15 22.39 0.23 -1.30 16 17 C -0.33 -18.07 9.83 22.87 0.22 -17.84 16 18 C 0.24 14.78 6.55 40.19 0.26 15.04 16 19 C -0.47 -28.77 9.14 23.46 0.21 -28.55 16 20 H 0.09 4.98 7.85 -2.91 -0.02 4.96 16 21 C 0.00 0.29 5.50 85.29 0.47 0.76 16 22 N -0.68 -43.63 8.99 21.84 0.20 -43.43 16 23 Si 0.97 44.64 29.56 68.60 2.03 46.67 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 27 N -0.51 -32.17 5.74 -186.37 -1.07 -33.24 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.94 6.66 -2.39 -0.02 0.93 16 31 H 0.18 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.18 0.99 7.51 -2.39 -0.02 0.97 16 33 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.14 6.43 -2.39 -0.02 1.13 16 38 H 0.07 1.27 6.29 -2.39 -0.02 1.26 16 39 H 0.41 14.23 6.39 -92.71 -0.59 13.63 16 40 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 41 H 0.14 5.23 8.06 -2.91 -0.02 5.21 16 42 H 0.11 5.33 8.06 -2.91 -0.02 5.30 16 43 H 0.27 16.31 8.29 -92.71 -0.77 15.54 16 Total: -1.00 -105.87 364.83 1.15 -104.72 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.45 Total: 31.22 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 7.53 Total: -5.57 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -4.08 Total: -129.39 kcal Atomic # 8 Polarization: -106.80 SS G_CDS: -4.48 Total: -111.28 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 63.93 SS G_CDS: -0.30 Total: 63.63 kcal Total: -105.87 1.15 -104.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.301 kcal (2) G-P(sol) polarization free energy of solvation -105.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds