Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46829 * 2 1 4 4 C 1.52999 * 109.46795 * 239.99981 * 2 1 3 5 5 S 1.81403 * 109.47021 * 180.02562 * 4 2 1 6 6 C 1.81398 * 101.92257 * 180.02562 * 5 4 2 7 7 O 1.42102 * 108.57682 * 65.51538 * 5 4 2 8 8 O 1.42097 * 108.57698 * 294.48969 * 5 4 2 9 9 N 1.46499 * 109.47184 * 120.00423 * 2 1 3 10 10 C 1.46497 * 120.00326 * 59.99671 * 9 2 1 11 11 C 1.34780 * 119.99645 * 239.99893 * 9 2 1 12 12 O 1.21573 * 119.99826 * 359.97438 * 11 9 2 13 13 N 1.34770 * 119.99860 * 179.97438 * 11 9 2 14 14 C 1.39248 * 119.99993 * 174.91010 * 13 11 9 15 15 C 1.39688 * 119.57552 * 185.43103 * 14 13 11 16 16 C 1.38648 * 119.49543 * 179.97438 * 15 14 13 17 17 C 1.38354 * 118.66801 * 359.97438 * 16 15 14 18 18 C 1.40574 * 119.13329 * 0.02562 * 17 16 15 19 19 C 1.41326 * 119.78531 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00486 * 359.97438 * 19 18 17 21 21 C 1.40024 * 119.99964 * 180.02562 * 19 18 17 22 22 N 1.30741 * 119.99907 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47171 * 90.00338 * 23 21 19 25 25 H 1.48507 * 109.46935 * 209.99746 * 23 21 19 26 26 H 1.48498 * 109.47219 * 329.99977 * 23 21 19 27 27 N 1.31899 * 119.57574 * 5.15661 * 14 13 11 28 28 H 1.08999 * 109.47019 * 60.00201 * 1 2 3 29 29 H 1.08996 * 109.46829 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46636 * 300.00017 * 1 2 3 31 31 H 1.08999 * 109.47485 * 60.00104 * 4 2 1 32 32 H 1.08996 * 109.47384 * 300.00193 * 4 2 1 33 33 H 1.09005 * 109.47346 * 300.00358 * 6 5 4 34 34 H 1.09000 * 109.47176 * 60.00037 * 6 5 4 35 35 H 1.09000 * 109.47341 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47208 * 89.99669 * 10 9 2 37 37 H 1.08997 * 109.47330 * 210.00396 * 10 9 2 38 38 H 1.09005 * 109.46804 * 329.99976 * 10 9 2 39 39 H 0.97003 * 120.00184 * 354.91492 * 13 11 9 40 40 H 1.08002 * 120.25131 * 359.94752 * 15 14 13 41 41 H 1.07998 * 120.66025 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.42692 * 179.97438 * 17 16 15 43 43 H 0.97005 * 120.00063 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 3.8540 -0.7220 -1.2489 6 6 4.2287 -1.6086 -2.7865 7 8 4.3062 -1.5048 -0.1526 8 8 4.3073 0.6186 -1.3780 9 7 2.0184 -0.6907 1.1961 10 6 1.6645 -2.0932 1.4279 11 6 2.7933 -0.0357 2.0833 12 8 3.0874 1.1281 1.8906 13 7 3.2422 -0.6709 3.1839 14 6 4.1279 -0.0291 4.0457 15 6 4.6761 -0.7329 5.1205 16 6 5.5582 -0.0924 5.9772 17 6 5.8704 1.2341 5.7381 18 6 5.2856 1.8875 4.6395 19 6 5.5944 3.2425 4.3827 20 1 6.2774 3.7728 5.0299 21 6 5.0140 3.8980 3.2899 22 7 4.1868 3.2563 2.5068 23 14 5.4216 5.6892 2.9510 24 1 6.6022 5.7670 2.0535 25 1 4.2602 6.3464 2.2993 26 1 5.7264 6.3782 4.2307 27 7 4.4426 1.2341 3.8334 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6767 -0.2075 -2.1392 32 1 1.6766 -1.7489 -1.2493 33 1 3.8006 -2.6101 -2.7420 34 1 3.8014 -1.0680 -3.6310 35 1 5.3092 -1.6810 -2.9101 36 1 2.4157 -2.7377 0.9715 37 1 1.6239 -2.2853 2.5001 38 1 0.6904 -2.3002 0.9846 39 1 2.9483 -1.5752 3.3758 40 1 4.4144 -1.7681 5.2832 41 1 5.9934 -0.6187 6.8138 42 1 6.5539 1.7608 6.3877 43 1 3.7844 3.7105 1.7499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414490065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -13.402925 kcal Electronic energy + Delta-G solvation = -29398.253003 eV Core-core repulsion = 25380.370321 eV Total energy + Delta-G solvation = -4017.882682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78943 -37.93143 -36.75664 -36.04317 -35.69861 -34.00483 -33.02046 -31.87357 -30.12881 -29.78274 -28.63742 -27.79087 -26.59895 -25.37157 -22.71051 -21.27099 -20.63461 -18.95699 -18.59965 -18.13940 -16.99188 -16.66604 -16.27669 -15.97083 -15.83195 -15.15443 -14.90949 -14.50521 -14.28982 -13.68269 -13.53781 -13.43872 -13.35398 -13.15229 -13.03598 -12.91232 -12.66795 -12.46088 -12.21101 -11.98416 -11.83454 -11.78237 -11.71946 -11.68442 -11.07530 -11.03115 -10.86642 -10.81698 -10.50758 -10.37477 -10.31439 -9.78570 -9.55602 -8.99634 -8.87788 -8.23418 -7.79931 -7.06296 -6.78527 -5.95393 -4.23739 0.01762 2.82526 2.98403 3.08184 3.26203 3.28587 3.30755 3.41001 3.76108 4.01175 4.20387 4.24381 4.48060 4.51753 4.60982 4.65869 4.98029 5.08508 5.14868 5.17706 5.30743 5.32722 5.44034 5.58969 5.64295 5.86180 5.96489 6.08485 6.20357 6.23562 6.57525 6.67462 6.93857 6.96024 6.99743 7.33463 7.45426 7.75783 7.84858 7.95875 8.30109 8.41159 8.73656 8.93806 9.21501 9.65970 10.43054 10.65851 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.004906 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.217269 B = 5705.846890 C = 6743.496605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.171 3.829 3 H 0.121 0.879 4 C -0.628 4.628 5 S 2.418 3.582 6 C -0.670 4.670 7 O -0.916 6.916 8 O -0.919 6.919 9 N -0.647 5.647 10 C 0.075 3.925 11 C 0.672 3.328 12 O -0.457 6.457 13 N -0.665 5.665 14 C 0.388 3.612 15 C -0.358 4.358 16 C -0.036 4.036 17 C -0.308 4.308 18 C 0.272 3.728 19 C -0.426 4.426 20 H 0.081 0.919 21 C 0.056 3.944 22 N -0.645 5.645 23 Si 0.893 3.107 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.265 1.265 27 N -0.471 5.471 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.395 0.605 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 -11.856 -12.249 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.065 3.935 3 H 0.139 0.861 4 C -0.757 4.757 5 S 2.597 3.403 6 C -0.817 4.817 7 O -0.913 6.913 8 O -0.916 6.916 9 N -0.390 5.390 10 C -0.069 4.069 11 C 0.371 3.629 12 O -0.320 6.320 13 N -0.314 5.314 14 C 0.148 3.852 15 C -0.384 4.384 16 C -0.060 4.060 17 C -0.332 4.332 18 C 0.147 3.853 19 C -0.456 4.456 20 H 0.099 0.901 21 C -0.174 4.174 22 N -0.263 5.263 23 Si 0.718 3.282 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.189 1.189 27 N -0.189 5.189 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.713 -10.093 -12.741 18.442 hybrid contribution -0.218 -0.931 -0.144 0.967 sum -8.931 -11.025 -12.884 19.165 Atomic orbital electron populations 1.22073 0.93924 1.02118 1.02861 1.20341 0.95124 0.97839 0.80239 0.86089 1.30834 1.27191 1.10210 1.07511 1.08169 0.78441 0.76607 0.77093 1.30467 1.12255 1.15092 1.23929 1.93615 1.78297 1.71695 1.47662 1.93656 1.78269 1.33592 1.86113 1.47434 1.55715 1.12098 1.23800 1.21693 1.00409 0.83104 1.01680 1.16339 0.80059 0.85824 0.80640 1.91408 1.55674 1.11546 1.73383 1.42587 1.47636 1.17626 1.23546 1.18354 0.88730 0.91165 0.86938 1.20412 1.14030 0.99706 1.04248 1.20517 0.95019 0.94303 0.96153 1.21596 1.10929 0.95882 1.04748 1.18378 0.87269 0.93009 0.86688 1.19547 1.22596 0.94271 1.09212 0.90098 1.26178 0.95499 0.99250 0.96455 1.70317 1.14127 1.34282 1.07619 0.86565 0.78751 0.83633 0.79252 1.19707 1.20402 1.18916 1.68679 1.17790 1.03812 1.28639 0.91506 0.92353 0.91356 0.84475 0.85247 0.85827 0.85822 0.85530 0.92153 0.91703 0.91600 0.76970 0.89265 0.88755 0.88716 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.17 37.16 0.34 -1.16 16 2 C 0.17 2.29 2.70 -67.93 -0.18 2.10 16 3 H 0.12 2.04 6.90 -51.93 -0.36 1.68 16 4 C -0.63 -5.81 5.18 37.16 0.19 -5.62 16 5 S 2.42 32.21 5.24 -107.50 -0.56 31.65 16 6 C -0.67 -5.17 10.62 101.05 1.07 -4.10 16 7 O -0.92 -15.73 15.64 -57.83 -0.90 -16.63 16 8 O -0.92 -17.30 18.10 -57.83 -1.05 -18.35 16 9 N -0.65 -10.23 1.58 -179.68 -0.28 -10.51 16 10 C 0.07 0.85 9.14 59.85 0.55 1.39 16 11 C 0.67 14.83 7.72 -86.92 -0.67 14.16 16 12 O -0.46 -12.23 11.43 5.30 0.06 -12.17 16 13 N -0.66 -14.58 5.26 -15.79 -0.08 -14.66 16 14 C 0.39 10.22 7.43 -155.00 -1.15 9.07 16 15 C -0.36 -8.61 9.96 -38.89 -0.39 -9.00 16 16 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 17 C -0.31 -8.19 9.83 -38.66 -0.38 -8.57 16 18 C 0.27 8.06 6.55 -85.00 -0.56 7.51 16 19 C -0.43 -12.34 9.14 -37.74 -0.34 -12.68 16 20 H 0.08 2.19 7.85 -52.48 -0.41 1.78 16 21 C 0.06 1.56 5.50 -17.35 -0.10 1.46 16 22 N -0.65 -18.99 8.98 55.55 0.50 -18.49 16 23 Si 0.89 20.40 29.56 -169.99 -5.02 15.38 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 27 N -0.47 -14.07 5.73 -10.26 -0.06 -14.13 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.46 6.66 -51.93 -0.35 0.12 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.13 0.76 7.67 -51.93 -0.40 0.36 16 33 H 0.12 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.13 1.00 8.14 -51.92 -0.42 0.57 16 36 H 0.06 0.66 7.36 -51.93 -0.38 0.27 16 37 H 0.06 0.70 6.29 -51.93 -0.33 0.37 16 38 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 39 H 0.40 6.92 6.39 -40.82 -0.26 6.66 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 42 H 0.09 2.33 8.06 -52.48 -0.42 1.91 16 43 H 0.27 7.57 8.29 -40.82 -0.34 7.23 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -41.12 362.80 -9.71 -50.83 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.76 Total: 8.32 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.02 Total: -6.70 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.07 Total: -57.79 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.89 Total: -47.15 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 32.21 SS G_CDS: -0.56 Total: 31.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -41.12 -9.71 -50.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.427 kcal (2) G-P(sol) polarization free energy of solvation -41.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds