Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46829 * 2 1 4 4 C 1.52999 * 109.46795 * 239.99981 * 2 1 3 5 5 S 1.81403 * 109.47021 * 180.02562 * 4 2 1 6 6 C 1.81398 * 101.92257 * 180.02562 * 5 4 2 7 7 O 1.42102 * 108.57682 * 65.51538 * 5 4 2 8 8 O 1.42097 * 108.57698 * 294.48969 * 5 4 2 9 9 N 1.46499 * 109.47184 * 120.00423 * 2 1 3 10 10 C 1.46497 * 120.00326 * 59.99671 * 9 2 1 11 11 C 1.34780 * 119.99645 * 239.99893 * 9 2 1 12 12 O 1.21573 * 119.99826 * 359.97438 * 11 9 2 13 13 N 1.34770 * 119.99860 * 179.97438 * 11 9 2 14 14 C 1.39248 * 119.99993 * 174.91010 * 13 11 9 15 15 C 1.39688 * 119.57552 * 185.43103 * 14 13 11 16 16 C 1.38648 * 119.49543 * 179.97438 * 15 14 13 17 17 C 1.38354 * 118.66801 * 359.97438 * 16 15 14 18 18 C 1.40574 * 119.13329 * 0.02562 * 17 16 15 19 19 C 1.41326 * 119.78531 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00486 * 359.97438 * 19 18 17 21 21 C 1.40024 * 119.99964 * 180.02562 * 19 18 17 22 22 N 1.30741 * 119.99907 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47171 * 90.00338 * 23 21 19 25 25 H 1.48507 * 109.46935 * 209.99746 * 23 21 19 26 26 H 1.48498 * 109.47219 * 329.99977 * 23 21 19 27 27 N 1.31899 * 119.57574 * 5.15661 * 14 13 11 28 28 H 1.08999 * 109.47019 * 60.00201 * 1 2 3 29 29 H 1.08996 * 109.46829 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46636 * 300.00017 * 1 2 3 31 31 H 1.08999 * 109.47485 * 60.00104 * 4 2 1 32 32 H 1.08996 * 109.47384 * 300.00193 * 4 2 1 33 33 H 1.09005 * 109.47346 * 300.00358 * 6 5 4 34 34 H 1.09000 * 109.47176 * 60.00037 * 6 5 4 35 35 H 1.09000 * 109.47341 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47208 * 89.99669 * 10 9 2 37 37 H 1.08997 * 109.47330 * 210.00396 * 10 9 2 38 38 H 1.09005 * 109.46804 * 329.99976 * 10 9 2 39 39 H 0.97003 * 120.00184 * 354.91492 * 13 11 9 40 40 H 1.08002 * 120.25131 * 359.94752 * 15 14 13 41 41 H 1.07998 * 120.66025 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.42692 * 179.97438 * 17 16 15 43 43 H 0.97005 * 120.00063 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 3.8540 -0.7220 -1.2489 6 6 4.2287 -1.6086 -2.7865 7 8 4.3062 -1.5048 -0.1526 8 8 4.3073 0.6186 -1.3780 9 7 2.0184 -0.6907 1.1961 10 6 1.6645 -2.0932 1.4279 11 6 2.7933 -0.0357 2.0833 12 8 3.0874 1.1281 1.8906 13 7 3.2422 -0.6709 3.1839 14 6 4.1279 -0.0291 4.0457 15 6 4.6761 -0.7329 5.1205 16 6 5.5582 -0.0924 5.9772 17 6 5.8704 1.2341 5.7381 18 6 5.2856 1.8875 4.6395 19 6 5.5944 3.2425 4.3827 20 1 6.2774 3.7728 5.0299 21 6 5.0140 3.8980 3.2899 22 7 4.1868 3.2563 2.5068 23 14 5.4216 5.6892 2.9510 24 1 6.6022 5.7670 2.0535 25 1 4.2602 6.3464 2.2993 26 1 5.7264 6.3782 4.2307 27 7 4.4426 1.2341 3.8334 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6767 -0.2075 -2.1392 32 1 1.6766 -1.7489 -1.2493 33 1 3.8006 -2.6101 -2.7420 34 1 3.8014 -1.0680 -3.6310 35 1 5.3092 -1.6810 -2.9101 36 1 2.4157 -2.7377 0.9715 37 1 1.6239 -2.2853 2.5001 38 1 0.6904 -2.3002 0.9846 39 1 2.9483 -1.5752 3.3758 40 1 4.4144 -1.7681 5.2832 41 1 5.9934 -0.6187 6.8138 42 1 6.5539 1.7608 6.3877 43 1 3.7844 3.7105 1.7499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414490065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -45.258357 kcal Electronic energy + Delta-G solvation = -29399.634358 eV Core-core repulsion = 25380.370321 eV Total energy + Delta-G solvation = -4019.264037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35180 -39.75013 -37.89988 -37.45100 -36.82185 -35.89015 -34.92984 -33.13394 -32.16436 -30.65714 -30.39154 -28.58042 -27.69790 -27.37736 -24.33825 -23.22036 -22.19430 -20.40317 -19.85521 -19.65501 -18.70962 -18.00813 -17.56080 -17.19581 -16.99565 -16.50689 -16.31603 -16.26270 -16.10566 -15.58597 -14.82490 -14.69670 -14.53035 -14.26123 -14.12023 -13.93753 -13.85117 -13.70426 -13.62827 -13.34876 -12.97048 -12.95195 -12.89750 -12.86968 -12.83217 -12.70236 -12.53372 -12.28365 -12.01588 -11.80558 -11.74577 -11.49927 -11.23526 -10.84822 -10.76021 -9.87260 -9.50888 -9.07362 -8.74438 -7.99243 -6.39223 -0.89677 0.98873 1.30632 1.37013 1.50563 1.54039 1.72409 1.97191 2.27348 2.56868 2.88971 3.06449 3.08760 3.16984 3.60478 3.95098 4.04388 4.10093 4.16159 4.25182 4.31778 4.36050 4.49836 4.61268 4.69884 4.77026 4.83529 4.85750 4.88667 4.96818 4.97943 5.07741 5.09494 5.28993 5.32096 5.65855 5.76413 5.87292 5.94150 6.02213 6.26262 6.42937 6.84520 7.07455 7.16507 8.01073 8.41511 8.61302 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.004906 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.217269 B = 5705.846890 C = 6743.496605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.154 3.846 3 H 0.070 0.930 4 C -0.598 4.598 5 S 2.375 3.625 6 C -0.635 4.635 7 O -0.975 6.975 8 O -1.002 7.002 9 N -0.638 5.638 10 C 0.063 3.937 11 C 0.660 3.340 12 O -0.514 6.514 13 N -0.659 5.659 14 C 0.362 3.638 15 C -0.348 4.348 16 C -0.032 4.032 17 C -0.331 4.331 18 C 0.235 3.765 19 C -0.466 4.466 20 H 0.087 0.913 21 C 0.005 3.995 22 N -0.683 5.683 23 Si 0.974 3.026 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.250 1.250 27 N -0.507 5.507 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.181 0.819 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.414 0.586 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.106 0.894 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 -14.866 -14.046 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.049 3.951 3 H 0.088 0.912 4 C -0.731 4.731 5 S 2.565 3.435 6 C -0.787 4.787 7 O -0.972 6.972 8 O -1.000 7.000 9 N -0.380 5.380 10 C -0.078 4.078 11 C 0.359 3.641 12 O -0.381 6.381 13 N -0.310 5.310 14 C 0.122 3.878 15 C -0.374 4.374 16 C -0.056 4.056 17 C -0.354 4.354 18 C 0.110 3.890 19 C -0.497 4.497 20 H 0.105 0.895 21 C -0.221 4.221 22 N -0.301 5.301 23 Si 0.794 3.206 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.173 1.173 27 N -0.226 5.226 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.062 0.938 31 H 0.199 0.801 32 H 0.198 0.802 33 H 0.182 0.818 34 H 0.175 0.825 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.253 0.747 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.733 -13.165 -14.502 22.334 hybrid contribution 0.315 -0.280 0.354 0.550 sum -10.419 -13.445 -14.148 22.124 Atomic orbital electron populations 1.22035 0.90598 1.04359 1.02973 1.20589 0.97548 0.95943 0.81019 0.91161 1.30570 1.22157 1.13351 1.06979 1.08624 0.80678 0.75407 0.78827 1.30114 1.12881 1.16214 1.19492 1.93540 1.80291 1.71743 1.51596 1.93568 1.80749 1.37951 1.87683 1.47358 1.53957 1.13621 1.23050 1.22061 1.02984 0.80172 1.02616 1.16710 0.80470 0.85642 0.81235 1.91389 1.57824 1.14273 1.74643 1.42509 1.46959 1.18268 1.23281 1.18931 0.89557 0.90929 0.88363 1.20905 1.12463 1.01322 1.02703 1.21009 0.94192 0.93431 0.97008 1.21792 1.11681 0.97396 1.04552 1.18926 0.88121 0.94012 0.87980 1.19889 1.24159 0.95033 1.10648 0.89491 1.27118 0.95012 1.04204 0.95767 1.70570 1.15551 1.36048 1.07973 0.85356 0.78442 0.77322 0.79453 1.19464 1.19707 1.17349 1.68661 1.18635 1.05736 1.29601 0.88984 0.88832 0.93838 0.80121 0.80158 0.81780 0.82527 0.85670 0.91333 0.91488 0.87036 0.74749 0.85223 0.84293 0.87631 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.17 71.99 0.66 -1.75 16 2 C 0.15 4.03 2.70 44.99 0.12 4.15 16 3 H 0.07 2.58 6.90 -2.39 -0.02 2.57 16 4 C -0.60 -9.09 5.18 71.98 0.37 -8.72 16 5 S 2.38 63.33 5.24 -56.49 -0.30 63.03 16 6 C -0.63 -7.42 10.62 113.37 1.20 -6.21 16 7 O -0.97 -34.61 15.64 -127.37 -1.99 -36.60 16 8 O -1.00 -41.12 18.10 -127.37 -2.30 -43.43 16 9 N -0.64 -20.04 1.58 -840.64 -1.32 -21.37 16 10 C 0.06 1.26 9.14 127.77 1.17 2.42 16 11 C 0.66 30.66 7.72 179.06 1.38 32.04 16 12 O -0.51 -29.91 11.43 -3.94 -0.05 -29.95 16 13 N -0.66 -29.77 5.26 -322.13 -1.69 -31.46 16 14 C 0.36 19.74 7.43 133.26 0.99 20.73 16 15 C -0.35 -16.52 9.96 22.72 0.23 -16.29 16 16 C -0.03 -1.53 10.15 22.40 0.23 -1.30 16 17 C -0.33 -18.08 9.83 22.87 0.22 -17.86 16 18 C 0.24 14.78 6.55 40.19 0.26 15.04 16 19 C -0.47 -28.75 9.14 23.46 0.21 -28.53 16 20 H 0.09 4.98 7.85 -2.91 -0.02 4.96 16 21 C 0.00 0.28 5.50 85.29 0.47 0.75 16 22 N -0.68 -43.49 8.98 21.84 0.20 -43.29 16 23 Si 0.97 44.53 29.56 68.60 2.03 46.56 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 27 N -0.51 -32.18 5.73 -186.37 -1.07 -33.25 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 0.94 6.66 -2.39 -0.02 0.93 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.18 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.18 0.93 7.67 -2.39 -0.02 0.91 16 33 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.29 7.36 -2.39 -0.02 1.27 16 37 H 0.07 1.29 6.29 -2.39 -0.02 1.28 16 38 H 0.11 1.19 6.43 -2.38 -0.02 1.17 16 39 H 0.41 14.42 6.39 -92.71 -0.59 13.83 16 40 H 0.13 5.00 8.06 -2.91 -0.02 4.97 16 41 H 0.14 5.25 8.06 -2.91 -0.02 5.23 16 42 H 0.11 5.33 8.06 -2.91 -0.02 5.31 16 43 H 0.27 16.25 8.29 -92.70 -0.77 15.48 16 Total: -1.00 -105.07 362.80 1.47 -103.59 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.45 Total: 31.71 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 7.52 Total: -5.54 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -3.89 Total: -129.38 kcal Atomic # 8 Polarization: -105.64 SS G_CDS: -4.34 Total: -109.98 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 63.33 SS G_CDS: -0.30 Total: 63.03 kcal Total: -105.07 1.47 -103.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.334 kcal (2) G-P(sol) polarization free energy of solvation -105.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds