Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47018 * 111.00147 * 2 1 4 4 C 1.53093 * 109.25934 * 177.60863 * 3 2 1 5 5 O 1.43015 * 109.26000 * 56.85051 * 4 3 2 6 6 C 1.43022 * 113.73497 * 301.32922 * 5 4 3 7 7 H 1.08998 * 109.54443 * 298.71377 * 6 5 4 8 8 C 1.53000 * 109.50506 * 178.60609 * 6 5 4 9 9 S 1.81397 * 109.47367 * 63.76354 * 8 6 5 10 10 O 1.42107 * 110.53918 * 291.27456 * 9 8 6 11 11 O 1.42101 * 110.54536 * 68.02465 * 9 8 6 12 12 N 1.65601 * 104.45274 * 179.65243 * 9 8 6 13 13 C 1.38827 * 119.99991 * 64.23525 * 12 9 8 14 14 C 1.39793 * 119.58121 * 176.67148 * 13 12 9 15 15 C 1.38601 * 119.48759 * 180.02562 * 14 13 12 16 16 C 1.38384 * 118.68082 * 0.02562 * 15 14 13 17 17 C 1.40555 * 119.15143 * 0.02562 * 16 15 14 18 18 C 1.41319 * 119.78630 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00209 * 151.76898 * 18 17 16 20 20 C 1.40027 * 119.99625 * 331.76358 * 18 17 16 21 21 N 1.30748 * 119.99445 * 159.04804 * 20 18 17 22 22 Si 1.86796 * 120.00369 * 339.05735 * 20 18 17 23 23 H 1.48494 * 109.47400 * 95.14377 * 22 20 18 24 24 H 1.48505 * 109.46994 * 215.14645 * 22 20 18 25 25 H 1.48496 * 109.46890 * 335.14023 * 22 20 18 26 26 N 1.31957 * 119.58295 * 356.40492 * 13 12 9 27 27 C 1.47013 * 110.99864 * 236.36776 * 2 1 3 28 28 H 1.08993 * 109.46751 * 183.63304 * 1 2 3 29 29 H 1.08997 * 109.46913 * 303.63284 * 1 2 3 30 30 H 1.08996 * 109.47164 * 63.63603 * 1 2 3 31 31 H 1.08999 * 109.50464 * 297.54692 * 3 2 1 32 32 H 1.09004 * 109.50547 * 57.67215 * 3 2 1 33 33 H 1.09005 * 109.50818 * 176.78217 * 4 3 2 34 34 H 1.09004 * 109.50455 * 296.86989 * 4 3 2 35 35 H 1.08996 * 109.47223 * 183.76329 * 8 6 5 36 36 H 1.09004 * 109.47290 * 303.76301 * 8 6 5 37 37 H 0.96995 * 119.99727 * 244.24164 * 12 9 8 38 38 H 1.07990 * 120.25827 * 0.02562 * 14 13 12 39 39 H 1.08003 * 120.66091 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.42671 * 180.02562 * 16 15 14 41 41 H 0.96999 * 119.99999 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.51200 * 62.45893 * 27 2 1 43 43 H 1.08997 * 109.54304 * 302.34445 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9960 1.3725 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0176 0.5575 -1.0403 6 6 3.5250 -0.7849 -1.0710 7 1 3.8385 -1.3091 -0.1682 8 6 4.0826 -1.5058 -2.2999 9 16 5.8873 -1.6270 -2.1629 10 8 6.4839 -0.3431 -2.2855 11 8 6.2493 -2.5052 -1.1060 12 7 6.3533 -2.4266 -3.5361 13 6 6.1523 -1.8445 -4.7803 14 6 6.6118 -2.4953 -5.9290 15 6 6.4106 -1.9122 -7.1702 16 6 5.7566 -0.6943 -7.2336 17 6 5.3192 -0.0892 -6.0427 18 6 4.6494 1.1542 -6.0919 19 1 3.9339 1.4129 -5.3255 20 6 4.9135 2.0509 -7.1345 21 7 4.0471 2.9848 -7.4287 22 14 6.5035 1.9127 -8.1051 23 1 6.2661 1.1116 -9.3327 24 1 6.9725 3.2702 -8.4828 25 1 7.5360 1.2465 -7.2713 26 7 5.5253 -0.6864 -4.8641 27 6 1.9959 -0.7602 -1.1428 28 1 -0.3632 -1.0256 0.0651 29 1 -0.3633 0.5692 0.8556 30 1 -0.3633 0.4563 -0.9207 31 1 1.6828 1.8826 -0.9110 32 1 1.6134 1.9092 0.8682 33 1 3.9223 2.3399 0.0029 34 1 3.8385 0.8650 0.9968 35 1 3.6547 -2.5065 -2.3594 36 1 3.8232 -0.9458 -3.1984 37 1 6.7665 -3.3017 -3.4711 38 1 7.1196 -3.4451 -5.8500 39 1 6.7581 -2.3982 -8.0699 40 1 5.5844 -0.2148 -8.1859 41 1 4.2298 3.6058 -8.1511 42 1 1.6828 -0.2842 -2.0720 43 1 1.6135 -1.7803 -1.1095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424740937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = -97.707729 kcal Electronic energy + Delta-G solvation = -28713.063433 eV Core-core repulsion = 24691.525020 eV Total energy + Delta-G solvation = -4021.538413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79035 -40.67400 -38.16652 -37.05011 -36.85546 -36.65175 -35.16351 -34.18806 -32.96336 -31.16229 -30.25994 -28.52064 -27.49464 -25.17663 -24.03827 -23.89720 -23.24554 -21.58260 -20.49354 -20.03023 -18.78071 -18.15418 -17.74727 -17.61222 -17.36293 -17.27417 -16.48335 -16.29228 -16.17092 -16.07385 -15.91971 -15.66517 -15.11203 -14.86950 -14.70596 -14.28524 -13.92658 -13.75493 -13.68418 -13.41020 -13.31443 -13.23023 -13.14686 -13.00531 -12.96039 -12.83825 -12.55992 -12.41626 -12.35976 -12.13509 -11.87818 -11.77820 -11.53249 -11.09229 -10.75447 -10.40009 -9.95468 -9.55035 -9.16018 -8.98392 -6.68027 -0.81953 0.62732 0.79596 1.25304 1.41719 1.48343 1.55002 2.09873 2.46160 2.50770 2.61176 2.82619 3.28836 3.38818 3.52880 3.64967 3.71353 3.81360 3.90168 4.07774 4.10174 4.24871 4.30407 4.47251 4.53836 4.58187 4.60193 4.61311 4.64960 4.68496 4.72434 4.83510 4.89503 4.95313 5.04101 5.23905 5.53092 5.69136 5.76041 5.79919 5.86476 5.96784 6.03218 6.23765 6.49648 6.68716 7.59450 8.09287 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.004524 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.676296 B = 6188.112332 C = 7735.894160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.547 5.547 3 C 0.016 3.984 4 C 0.050 3.950 5 O -0.405 6.405 6 C 0.099 3.901 7 H 0.092 0.908 8 C -0.606 4.606 9 S 2.625 3.375 10 O -0.963 6.963 11 O -0.979 6.979 12 N -1.026 6.026 13 C 0.384 3.616 14 C -0.305 4.305 15 C -0.015 4.015 16 C -0.322 4.322 17 C 0.275 3.725 18 C -0.455 4.455 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.826 5.826 22 Si 0.967 3.033 23 H -0.239 1.239 24 H -0.274 1.274 25 H -0.267 1.267 26 N -0.608 5.608 27 C 0.034 3.966 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.179 0.821 36 H 0.139 0.861 37 H 0.441 0.559 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.116 0.884 41 H 0.300 0.700 42 H 0.032 0.968 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -9.385 8.953 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.112 4.112 4 C -0.026 4.026 5 O -0.325 6.325 6 C 0.039 3.961 7 H 0.110 0.890 8 C -0.738 4.738 9 S 2.720 3.280 10 O -0.953 6.953 11 O -0.969 6.969 12 N -0.776 5.776 13 C 0.147 3.853 14 C -0.331 4.331 15 C -0.040 4.040 16 C -0.345 4.345 17 C 0.150 3.850 18 C -0.487 4.487 19 H 0.075 0.925 20 C -0.160 4.160 21 N -0.451 5.451 22 Si 0.789 3.211 23 H -0.164 1.164 24 H -0.200 1.200 25 H -0.191 1.191 26 N -0.331 5.331 27 C -0.095 4.095 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.197 0.803 36 H 0.157 0.843 37 H 0.280 0.720 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.050 0.950 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.575 -8.446 10.599 14.017 hybrid contribution -0.255 0.051 -2.012 2.028 sum -3.830 -8.395 8.588 12.606 Atomic orbital electron populations 1.22481 0.85062 1.03657 1.01228 1.62304 1.09832 1.13573 1.41451 1.22868 0.95821 0.90031 1.02461 1.22990 0.93163 0.97104 0.89324 1.88223 1.70264 1.23756 1.50271 1.21823 0.95019 0.83905 0.95341 0.88995 1.30431 1.24871 1.11152 1.07321 1.04446 0.78360 0.73143 0.72011 1.93579 1.74405 1.42563 1.84719 1.93554 1.83025 1.66717 1.53642 1.53154 1.73111 1.32999 1.18370 1.18259 0.92194 0.89514 0.85366 1.21269 1.15553 1.05302 0.90967 1.21329 0.91820 0.92747 0.98053 1.21892 1.13925 1.00608 0.98031 1.18176 0.88286 0.92249 0.86330 1.19121 1.20870 1.00383 1.08352 0.92481 1.26742 1.00429 0.93216 0.95649 1.69642 1.34760 1.14743 1.25970 0.85502 0.78246 0.77974 0.79337 1.16365 1.20049 1.19118 1.67475 1.25209 1.10637 1.29819 1.22702 0.93310 1.01162 0.92333 0.89694 0.89379 0.96009 0.95176 0.86585 0.87155 0.90618 0.80290 0.84255 0.71986 0.82949 0.82734 0.86623 0.88881 0.94971 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.60 127.69 1.23 1.63 16 2 N -0.55 -12.49 4.99 -921.45 -4.59 -17.08 16 3 C 0.02 0.38 5.66 86.31 0.49 0.87 16 4 C 0.05 1.36 7.01 72.01 0.50 1.87 16 5 O -0.41 -14.76 9.74 -147.29 -1.43 -16.19 16 6 C 0.10 2.98 2.81 30.63 0.09 3.06 16 7 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 8 C -0.61 -18.95 5.57 71.98 0.40 -18.54 16 9 S 2.62 95.52 4.93 -56.49 -0.28 95.24 16 10 O -0.96 -45.83 16.60 -125.01 -2.08 -47.90 16 11 O -0.98 -34.93 18.08 -127.65 -2.31 -37.23 16 12 N -1.03 -33.95 5.74 -55.37 -0.32 -34.27 16 13 C 0.38 15.62 7.23 133.42 0.96 16.58 16 14 C -0.30 -10.72 9.95 22.73 0.23 -10.49 16 15 C -0.02 -0.55 10.15 22.39 0.23 -0.32 16 16 C -0.32 -14.53 7.30 22.87 0.17 -14.36 16 17 C 0.28 14.35 5.97 40.18 0.24 14.59 16 18 C -0.46 -26.05 9.77 23.46 0.23 -25.82 16 19 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 20 C 0.06 3.10 5.36 85.29 0.46 3.55 16 21 N -0.83 -44.05 13.92 21.84 0.30 -43.74 16 22 Si 0.97 41.94 24.56 68.60 1.68 43.63 16 23 H -0.24 -9.21 6.64 99.48 0.66 -8.55 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -12.38 6.98 99.48 0.69 -11.69 16 26 N -0.61 -30.02 7.26 -186.58 -1.35 -31.37 16 27 C 0.03 0.88 4.95 86.31 0.43 1.31 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 34 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.18 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.14 5.32 6.81 -2.39 -0.02 5.30 16 37 H 0.44 10.72 8.78 -96.75 -0.85 9.87 16 38 H 0.15 3.98 8.06 -2.92 -0.02 3.95 16 39 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.12 5.06 4.68 -2.91 -0.01 5.04 16 41 H 0.30 14.15 8.29 -92.71 -0.77 13.38 16 42 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -76.25 360.17 -4.60 -80.85 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.13 Total: 34.14 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 5.64 Total: -26.07 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -5.96 Total: -126.46 kcal Atomic # 8 Polarization: -95.51 SS G_CDS: -5.82 Total: -101.33 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.68 Total: 43.63 kcal Atomic # 16 Polarization: 95.52 SS G_CDS: -0.28 Total: 95.24 kcal Total: -76.25 -4.60 -80.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424740937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.859 kcal (2) G-P(sol) polarization free energy of solvation -76.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds