Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47159 * 2 1 4 4 C 1.34238 * 117.00059 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99706 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00090 * 180.02562 * 4 3 2 7 7 C 1.50694 * 109.47243 * 180.02562 * 6 4 3 8 8 C 1.33404 * 125.96860 * 89.99464 * 7 6 4 9 9 N 1.32026 * 114.57340 * 179.97438 * 8 7 6 10 10 C 1.29628 * 116.90294 * 0.02562 * 9 8 7 11 11 N 1.39006 * 124.93835 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00657 * 0.02562 * 11 10 9 13 13 O 1.21580 * 119.99422 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00223 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00125 * 359.97438 * 14 12 11 16 16 C 1.46500 * 120.00163 * 179.97438 * 14 12 11 17 17 H 1.08998 * 109.46845 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47473 * 240.00131 * 16 14 12 19 19 C 1.50706 * 109.47187 * 119.99734 * 16 14 12 20 20 H 1.07998 * 119.99629 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99955 * 179.97438 * 19 16 14 22 22 N 1.31510 * 120.00308 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99908 * 180.02562 * 21 19 16 24 24 H 1.48507 * 109.46754 * 90.00468 * 23 21 19 25 25 H 1.48498 * 109.47278 * 210.00299 * 23 21 19 26 26 H 1.48498 * 109.47109 * 330.00728 * 23 21 19 27 27 S 1.70956 * 110.11143 * 0.22469 * 10 9 8 28 28 H 1.09006 * 109.46815 * 60.00040 * 1 2 3 29 29 H 1.09000 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47421 * 300.00456 * 1 2 3 31 31 H 1.08998 * 109.47421 * 239.99543 * 2 1 3 32 32 H 1.09006 * 109.46815 * 119.99960 * 2 1 3 33 33 H 1.08994 * 109.47300 * 59.99673 * 6 4 3 34 34 H 1.09000 * 109.47085 * 300.00097 * 6 4 3 35 35 H 1.07999 * 122.71555 * 359.97438 * 8 7 6 36 36 H 0.97006 * 119.99438 * 180.02562 * 11 10 9 37 37 H 1.08993 * 109.47565 * 270.00429 * 15 14 12 38 38 H 1.09007 * 109.46761 * 30.00462 * 15 14 12 39 39 H 1.09002 * 109.46792 * 150.00115 * 15 14 12 40 40 H 1.09002 * 109.47153 * 59.99757 * 18 16 14 41 41 H 1.09001 * 109.46832 * 299.99948 * 18 16 14 42 42 H 1.09004 * 109.47261 * 179.97438 * 18 16 14 43 43 H 0.96998 * 120.00365 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 6 5.4257 2.8585 0.0010 8 6 6.2081 2.8179 -1.0787 9 7 7.5006 2.7506 -0.8180 10 6 7.8468 2.7320 0.4311 11 7 9.1559 2.6632 0.8934 12 6 10.1783 2.6105 0.0169 13 8 9.9556 2.6236 -1.1782 14 7 11.4475 2.5433 0.4653 15 6 11.7158 2.5281 1.9054 16 6 12.5589 2.4855 -0.4875 17 1 12.1671 2.5074 -1.5044 18 6 13.3485 1.1928 -0.2723 19 6 13.4660 3.6698 -0.2736 20 1 13.2377 4.3929 0.4954 21 6 14.5879 3.8295 -1.0590 22 7 14.8662 2.9487 -1.9951 23 14 15.7127 5.2971 -0.7935 24 1 16.7609 4.9443 0.1976 25 1 16.3534 5.6691 -2.0804 26 1 14.9180 6.4445 -0.2862 27 16 6.4587 2.7972 1.4268 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.5845 3.4693 0.8911 34 1 3.5852 3.4698 -0.8888 35 1 5.8160 2.8384 -2.0848 36 1 9.3335 2.6531 1.8470 37 1 11.8364 3.5505 2.2634 38 1 10.8816 2.0570 2.4254 39 1 12.6291 1.9653 2.0989 40 1 12.6923 0.3363 -0.4270 41 1 13.7402 1.1714 0.7446 42 1 14.1751 1.1497 -0.9816 43 1 15.6552 3.0613 -2.5479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425897743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = -47.161643 kcal Electronic energy + Delta-G solvation = -26621.521114 eV Core-core repulsion = 22602.174544 eV Total energy + Delta-G solvation = -4019.346570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77262 -40.24762 -38.91048 -36.95050 -35.64615 -34.59030 -33.05590 -32.54204 -31.78340 -29.38896 -27.33352 -26.26426 -25.23056 -24.76812 -23.55605 -22.22196 -21.38150 -20.11633 -19.32812 -18.18015 -18.01999 -17.18690 -16.94158 -16.52132 -16.48207 -15.97865 -15.33874 -15.16219 -14.63347 -14.55628 -14.15554 -14.08013 -13.66195 -13.38988 -13.19925 -13.04919 -12.86221 -12.63094 -12.60973 -12.20437 -11.97559 -11.67071 -11.56027 -11.33073 -11.08461 -10.87638 -10.87093 -10.78573 -10.70245 -10.47536 -10.25110 -10.16237 -9.80349 -9.19399 -9.17428 -8.95325 -8.42885 -8.12298 -7.59078 -6.06596 -4.14606 0.75417 0.97809 1.62719 1.96159 2.36596 2.97222 3.05210 3.26943 3.34401 3.37543 3.90465 4.18530 4.32051 4.42175 4.52945 4.54906 4.64576 4.75598 4.86623 4.88137 5.10008 5.24477 5.31152 5.36156 5.47967 5.55323 5.61817 5.93516 5.95850 6.14890 6.16092 6.40713 6.62815 6.79292 6.90161 7.07218 7.43256 7.49942 7.61039 7.71895 7.97336 8.08900 8.20524 8.56446 8.85995 9.16931 9.51990 10.98750 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030183 B = 0.002037 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.452028 B =13742.789908 C =13777.024920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.456 3.544 5 O -0.491 6.491 6 C -0.019 4.019 7 C -0.266 4.266 8 C 0.105 3.895 9 N -0.478 5.478 10 C 0.319 3.681 11 N -0.648 5.648 12 C 0.689 3.311 13 O -0.529 6.529 14 N -0.602 5.602 15 C 0.084 3.916 16 C 0.273 3.727 17 H 0.066 0.934 18 C -0.148 4.148 19 C -0.526 4.526 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.900 3.100 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.275 1.275 27 S 0.111 5.889 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.175 0.825 36 H 0.413 0.587 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.030 0.970 42 H 0.096 0.904 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.532 -2.284 9.842 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.297 3.703 5 O -0.377 6.377 6 C -0.059 4.059 7 C -0.388 4.388 8 C -0.048 4.048 9 N -0.198 5.198 10 C -0.051 4.051 11 N -0.303 5.303 12 C 0.388 3.612 13 O -0.400 6.400 14 N -0.338 5.338 15 C -0.060 4.060 16 C 0.173 3.827 17 H 0.084 0.916 18 C -0.206 4.206 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.525 5.525 23 Si 0.728 3.272 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.200 1.200 27 S 0.361 5.639 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.192 0.808 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.031 0.969 41 H 0.049 0.951 42 H 0.114 0.886 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.857 -2.677 9.474 26.736 hybrid contribution 0.590 0.559 -0.096 0.818 sum -24.267 -2.118 9.378 26.102 Atomic orbital electron populations 1.21809 0.92572 1.03027 1.03524 1.23032 0.95322 0.80143 1.02764 1.86487 1.24517 1.32530 1.84340 1.23789 0.80511 0.92939 0.73049 1.90728 1.60296 1.42865 1.43818 1.19434 0.88226 0.91298 1.06943 1.24679 0.98108 1.21314 0.94707 1.21590 0.86366 0.97135 0.99722 1.66685 1.16471 1.20838 1.15795 1.23452 0.90347 0.99628 0.91659 1.42753 1.01346 1.75607 1.10576 1.16050 0.80570 0.79499 0.85059 1.91012 1.82116 1.54054 1.12836 1.47660 1.04235 1.74523 1.07389 1.21548 1.01237 1.01406 0.81780 1.18944 0.81110 0.93897 0.88752 0.91592 1.22121 1.01452 0.95971 1.01088 1.21311 1.08010 1.08308 1.18816 0.92266 1.24888 0.97553 0.96536 0.94831 1.69874 1.27118 1.35031 1.20482 0.86471 0.80542 0.82647 0.77566 1.20641 1.21098 1.19985 1.83620 0.97246 1.72899 1.10091 0.91424 0.90222 0.91470 0.91130 0.91214 0.86690 0.85624 0.80812 0.74790 0.93013 0.93874 0.90088 0.96859 0.95075 0.88601 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 37.16 0.38 -0.32 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.18 10.22 -39.28 -0.40 -3.59 16 4 C 0.46 4.67 7.95 36.01 0.29 4.96 16 5 O -0.49 -6.91 15.78 -18.75 -0.30 -7.21 16 6 C -0.02 -0.15 6.34 -29.04 -0.18 -0.33 16 7 C -0.27 -3.13 5.08 -36.00 -0.18 -3.31 16 8 C 0.10 1.52 11.24 -19.16 -0.22 1.31 16 9 N -0.48 -9.05 8.65 -15.12 -0.13 -9.18 16 10 C 0.32 5.36 8.02 -87.34 -0.70 4.66 16 11 N -0.65 -11.00 5.27 -17.48 -0.09 -11.09 16 12 C 0.69 15.20 8.24 -86.93 -0.72 14.48 16 13 O -0.53 -14.12 14.30 5.30 0.08 -14.04 16 14 N -0.60 -12.98 2.75 -181.01 -0.50 -13.48 16 15 C 0.08 1.36 9.44 59.85 0.57 1.92 16 16 C 0.27 7.04 2.64 -69.08 -0.18 6.86 16 17 H 0.07 1.99 6.90 -51.93 -0.36 1.63 16 18 C -0.15 -3.54 8.95 37.16 0.33 -3.21 16 19 C -0.53 -14.22 8.37 -34.44 -0.29 -14.50 16 20 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 23 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 S 0.11 1.33 23.22 -107.50 -2.50 -1.16 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.41 5.32 6.55 -40.82 -0.27 5.05 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.52 6.36 -51.92 -0.33 0.19 16 39 H 0.08 1.31 6.43 -51.93 -0.33 0.98 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 42 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -36.53 376.66 -9.04 -45.57 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.71 Total: 2.11 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -0.77 Total: 14.86 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.09 Total: -58.31 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.62 Total: -24.83 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.53 -9.04 -45.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425897743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.595 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds