Wall clock time and date at job start Sat Apr 11 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 120.00177 * 2 1 4 4 N 1.34778 * 119.99767 * 179.97438 * 2 1 3 5 5 C 1.39463 * 120.00045 * 174.83402 * 4 2 1 6 6 C 1.39378 * 120.39338 * 327.51598 * 5 4 2 7 7 C 1.38278 * 118.43812 * 179.75335 * 6 5 4 8 8 C 1.39507 * 119.14192 * 0.53549 * 7 6 5 9 9 C 1.47870 * 119.64593 * 179.73335 * 8 7 6 10 10 O 1.21573 * 119.99863 * 359.72096 * 9 8 7 11 11 N 1.34776 * 120.00193 * 179.73235 * 9 8 7 12 12 C 1.39897 * 120.00041 * 185.08816 * 11 9 8 13 13 C 1.38948 * 120.00503 * 33.83195 * 12 11 9 14 14 C 1.37992 * 119.99892 * 180.27448 * 13 12 11 15 15 C 1.38913 * 120.00101 * 359.51915 * 14 13 12 16 16 O 1.35775 * 119.99574 * 180.22906 * 15 14 13 17 17 C 1.34812 * 117.00367 * 186.05231 * 16 15 14 18 18 H 1.08004 * 119.99346 * 5.44265 * 17 16 15 19 19 C 1.38632 * 120.00385 * 185.43863 * 17 16 15 20 20 N 1.31569 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99811 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47581 * 60.00171 * 21 19 17 23 23 H 1.48500 * 109.46839 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 299.99915 * 21 19 17 25 25 C 1.38911 * 120.00767 * 0.45795 * 15 14 13 26 26 C 1.37991 * 120.00536 * 359.79488 * 25 15 14 27 27 N 1.32826 * 120.71182 * 359.45443 * 8 7 6 28 28 C 1.31356 * 121.70710 * 0.27565 * 27 8 7 29 29 H 1.08991 * 109.47411 * 240.00194 * 1 2 3 30 30 H 1.09003 * 109.47011 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47012 * 120.00196 * 1 2 3 32 32 H 0.96999 * 120.00031 * 354.82595 * 4 2 1 33 33 H 1.08004 * 120.78000 * 0.05127 * 6 5 4 34 34 H 1.08003 * 120.43057 * 180.28748 * 7 6 5 35 35 H 0.96996 * 120.00402 * 5.08019 * 11 9 8 36 36 H 1.08004 * 119.99848 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.99790 * 179.74418 * 14 13 12 38 38 H 0.96997 * 120.00065 * 180.02562 * 20 19 17 39 39 H 1.08003 * 119.99928 * 179.77259 * 25 15 14 40 40 H 1.08002 * 120.00588 * 179.97438 * 26 25 15 41 41 H 1.07999 * 119.60691 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5712 -1.1698 -0.1082 6 6 4.2221 -0.1874 -0.8524 7 6 5.6023 -0.2255 -0.9288 8 6 6.2911 -1.2457 -0.2724 9 6 7.7667 -1.3006 -0.3516 10 8 8.3727 -0.4624 -0.9905 11 7 8.4397 -2.2799 0.2843 12 6 9.8386 -2.2718 0.2986 13 6 10.5262 -1.0649 0.3313 14 6 11.9061 -1.0570 0.3396 15 6 12.6077 -2.2558 0.3254 16 8 13.9653 -2.2480 0.3383 17 6 14.5857 -3.4365 0.1969 18 1 14.0082 -4.3260 -0.0076 19 6 15.9647 -3.5169 0.3137 20 7 16.6681 -2.4334 0.5632 21 14 16.8242 -5.1638 0.1170 22 1 16.5466 -5.7086 -1.2362 23 1 18.2882 -4.9814 0.2869 24 1 16.3213 -6.1105 1.1445 25 6 11.9204 -3.4626 0.2932 26 6 10.5406 -3.4708 0.2796 27 7 5.6362 -2.1651 0.4277 28 6 4.3263 -2.1551 0.5253 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6988 -2.0055 0.0767 33 1 3.6620 0.5883 -1.3535 34 1 6.1398 0.5225 -1.4928 35 1 7.9543 -2.9902 0.7322 36 1 9.9807 -0.1328 0.3453 37 1 12.4406 -0.1187 0.3609 38 1 17.6330 -2.4896 0.6446 39 1 12.4661 -4.3945 0.2784 40 1 10.0063 -4.4090 0.2541 41 1 3.8285 -2.9192 1.1039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434864725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:17 Heat of formation + Delta-G solvation = -22.804978 kcal Electronic energy + Delta-G solvation = -27024.706856 eV Core-core repulsion = 22870.972519 eV Total energy + Delta-G solvation = -4153.734337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43642 -40.30221 -39.33301 -38.45804 -36.47281 -35.67955 -34.00348 -32.65428 -32.16170 -31.58775 -30.18892 -29.68748 -27.78889 -25.44417 -24.80735 -23.93823 -22.31916 -21.85694 -21.20576 -20.26884 -18.72119 -18.22981 -17.85072 -17.65259 -17.16093 -16.68692 -16.07364 -15.98959 -15.23050 -15.05552 -14.80938 -14.54302 -14.41076 -14.16191 -13.93903 -13.69440 -13.54194 -13.34728 -13.31254 -13.00004 -12.86301 -12.73077 -12.47928 -11.82867 -11.56156 -11.51462 -11.44044 -10.97627 -10.81775 -10.74542 -10.46702 -10.28824 -10.05523 -9.73375 -9.52706 -9.27947 -8.84119 -8.66371 -8.17660 -6.88622 -6.41989 -3.99713 0.22521 0.86145 1.84267 2.16301 2.23986 2.32811 2.81967 3.15350 3.16033 3.19170 3.22233 3.64781 3.89009 3.99372 4.02606 4.31263 4.46497 4.58220 4.62055 4.66882 4.70042 4.78740 5.13574 5.17929 5.25527 5.33904 5.41583 5.59162 5.66423 5.73386 5.81616 6.17958 6.21310 6.25512 6.31762 6.61516 6.83032 6.87559 7.00030 7.17388 7.23498 7.32375 7.40008 7.44852 7.76798 7.81300 8.02394 8.35175 9.03205 9.73909 10.75881 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.044069 B = 0.001684 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.212147 B =16625.597715 C =17079.523162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.519 6.519 4 N -0.669 5.669 5 C 0.113 3.887 6 C -0.088 4.088 7 C -0.086 4.086 8 C 0.067 3.933 9 C 0.562 3.438 10 O -0.520 6.520 11 N -0.638 5.638 12 C 0.034 3.966 13 C -0.067 4.067 14 C -0.177 4.177 15 C 0.147 3.853 16 O -0.176 6.176 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.219 4.219 26 C -0.087 4.087 27 N -0.437 5.437 28 C 0.078 3.922 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.416 0.584 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.411 0.589 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.270 0.730 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.501 -1.493 -0.484 33.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.393 6.393 4 N -0.316 5.316 5 C 0.015 3.985 6 C -0.116 4.116 7 C -0.107 4.107 8 C -0.072 4.072 9 C 0.348 3.652 10 O -0.395 6.395 11 N -0.282 5.282 12 C -0.058 4.058 13 C -0.087 4.087 14 C -0.197 4.197 15 C 0.093 3.907 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.238 4.238 26 C -0.107 4.107 27 N -0.148 5.148 28 C -0.086 4.086 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.253 0.747 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.248 0.752 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -31.778 -0.485 -0.474 31.786 hybrid contribution -0.723 -1.120 -0.185 1.346 sum -32.501 -1.605 -0.659 32.548 Atomic orbital electron populations 1.21940 0.90063 1.06377 1.04837 1.21161 0.91168 0.82935 0.74906 1.90788 1.70583 1.31167 1.46797 1.43481 1.04667 1.10481 1.72930 1.19001 0.84132 0.98250 0.97094 1.21603 0.94225 0.98950 0.96826 1.22074 0.93681 0.97731 0.97255 1.21155 0.94413 0.93524 0.98112 1.17760 0.85292 0.82500 0.79654 1.90826 1.68283 1.39480 1.40923 1.43023 1.05329 1.27313 1.52504 1.17258 0.80887 0.94379 1.13290 1.20610 0.93087 0.96599 0.98359 1.20110 0.92735 0.96486 1.10347 1.19428 0.85047 0.93164 0.93045 1.84000 1.12600 1.33127 1.78179 1.21267 0.90177 0.85137 1.50182 0.89139 1.25284 0.95482 0.99217 0.96536 1.70036 1.07186 1.27830 1.44586 0.85784 0.78324 0.80193 0.79139 1.19516 1.20307 1.19530 1.20973 0.93337 0.98584 1.10953 1.20483 0.93822 0.95475 1.00920 1.67514 1.09187 1.23561 1.14567 1.22581 0.89024 0.98715 0.98255 0.88808 0.88292 0.88737 0.74696 0.83057 0.82781 0.75232 0.85768 0.86044 0.91975 0.85049 0.87017 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.24 10.32 36.00 0.37 0.14 16 2 C 0.51 2.94 7.70 -10.99 -0.08 2.85 16 3 O -0.52 -5.51 14.74 5.56 0.08 -5.43 16 4 N -0.67 -2.91 5.33 -9.74 -0.05 -2.96 16 5 C 0.11 0.87 6.32 -83.54 -0.53 0.35 16 6 C -0.09 -0.86 8.75 -39.14 -0.34 -1.20 16 7 C -0.09 -0.98 9.62 -39.09 -0.38 -1.36 16 8 C 0.07 0.85 6.74 -83.02 -0.56 0.29 16 9 C 0.56 8.96 7.54 -12.32 -0.09 8.87 16 10 O -0.52 -9.83 14.02 5.30 0.07 -9.76 16 11 N -0.64 -9.93 5.32 -10.67 -0.06 -9.99 16 12 C 0.03 0.64 6.27 -83.65 -0.52 0.12 16 13 C -0.07 -1.36 8.65 -39.41 -0.34 -1.70 16 14 C -0.18 -3.98 9.98 -39.42 -0.39 -4.38 16 15 C 0.15 3.64 6.65 -39.08 -0.26 3.38 16 16 O -0.18 -5.09 9.75 0.02 0.00 -5.09 16 17 C -0.39 -10.99 9.44 30.88 0.29 -10.70 16 18 H 0.09 2.33 5.29 -52.48 -0.28 2.05 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 21 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.22 -4.79 9.12 -39.42 -0.36 -5.15 16 26 C -0.09 -1.62 9.96 -39.41 -0.39 -2.02 16 27 N -0.44 -4.77 9.53 -9.65 -0.09 -4.86 16 28 C 0.08 0.60 11.12 -17.34 -0.19 0.41 16 29 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.10 0.20 8.12 -51.93 -0.42 -0.22 16 31 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.42 0.16 8.82 -40.82 -0.36 -0.20 16 33 H 0.15 1.45 6.44 -52.48 -0.34 1.12 16 34 H 0.15 1.73 7.63 -52.48 -0.40 1.33 16 35 H 0.41 5.33 8.15 -40.82 -0.33 5.00 16 36 H 0.12 2.46 6.44 -52.48 -0.34 2.12 16 37 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.13 2.82 5.71 -52.48 -0.30 2.52 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -36.74 362.27 -6.75 -43.48 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.02 Total: 7.38 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -3.88 Total: -9.11 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.56 Total: -42.50 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.16 Total: -20.27 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.74 -6.75 -43.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434864725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.680 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds