Wall clock time and date at job start Sat Apr 11 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 120.00177 * 2 1 4 4 N 1.34778 * 119.99767 * 179.97438 * 2 1 3 5 5 C 1.39463 * 120.00045 * 174.83402 * 4 2 1 6 6 C 1.39378 * 120.39338 * 327.51598 * 5 4 2 7 7 C 1.38278 * 118.43812 * 179.75335 * 6 5 4 8 8 C 1.39507 * 119.14192 * 0.53549 * 7 6 5 9 9 C 1.47870 * 119.64593 * 179.73335 * 8 7 6 10 10 O 1.21573 * 119.99863 * 359.72096 * 9 8 7 11 11 N 1.34776 * 120.00193 * 179.73235 * 9 8 7 12 12 C 1.39897 * 120.00041 * 185.08816 * 11 9 8 13 13 C 1.38948 * 120.00503 * 33.83195 * 12 11 9 14 14 C 1.37992 * 119.99892 * 180.27448 * 13 12 11 15 15 C 1.38913 * 120.00101 * 359.51915 * 14 13 12 16 16 O 1.35775 * 119.99574 * 180.22906 * 15 14 13 17 17 C 1.34812 * 117.00367 * 186.05231 * 16 15 14 18 18 H 1.08004 * 119.99346 * 5.44265 * 17 16 15 19 19 C 1.38632 * 120.00385 * 185.43863 * 17 16 15 20 20 N 1.31569 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99811 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47581 * 60.00171 * 21 19 17 23 23 H 1.48500 * 109.46839 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 299.99915 * 21 19 17 25 25 C 1.38911 * 120.00767 * 0.45795 * 15 14 13 26 26 C 1.37991 * 120.00536 * 359.79488 * 25 15 14 27 27 N 1.32826 * 120.71182 * 359.45443 * 8 7 6 28 28 C 1.31356 * 121.70710 * 0.27565 * 27 8 7 29 29 H 1.08991 * 109.47411 * 240.00194 * 1 2 3 30 30 H 1.09003 * 109.47011 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47012 * 120.00196 * 1 2 3 32 32 H 0.96999 * 120.00031 * 354.82595 * 4 2 1 33 33 H 1.08004 * 120.78000 * 0.05127 * 6 5 4 34 34 H 1.08003 * 120.43057 * 180.28748 * 7 6 5 35 35 H 0.96996 * 120.00402 * 5.08019 * 11 9 8 36 36 H 1.08004 * 119.99848 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.99790 * 179.74418 * 14 13 12 38 38 H 0.96997 * 120.00065 * 180.02562 * 20 19 17 39 39 H 1.08003 * 119.99928 * 179.77259 * 25 15 14 40 40 H 1.08002 * 120.00588 * 179.97438 * 26 25 15 41 41 H 1.07999 * 119.60691 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5712 -1.1698 -0.1082 6 6 4.2221 -0.1874 -0.8524 7 6 5.6023 -0.2255 -0.9288 8 6 6.2911 -1.2457 -0.2724 9 6 7.7667 -1.3006 -0.3516 10 8 8.3727 -0.4624 -0.9905 11 7 8.4397 -2.2799 0.2843 12 6 9.8386 -2.2718 0.2986 13 6 10.5262 -1.0649 0.3313 14 6 11.9061 -1.0570 0.3396 15 6 12.6077 -2.2558 0.3254 16 8 13.9653 -2.2480 0.3383 17 6 14.5857 -3.4365 0.1969 18 1 14.0082 -4.3260 -0.0076 19 6 15.9647 -3.5169 0.3137 20 7 16.6681 -2.4334 0.5632 21 14 16.8242 -5.1638 0.1170 22 1 16.5466 -5.7086 -1.2362 23 1 18.2882 -4.9814 0.2869 24 1 16.3213 -6.1105 1.1445 25 6 11.9204 -3.4626 0.2932 26 6 10.5406 -3.4708 0.2796 27 7 5.6362 -2.1651 0.4277 28 6 4.3263 -2.1551 0.5253 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6988 -2.0055 0.0767 33 1 3.6620 0.5883 -1.3535 34 1 6.1398 0.5225 -1.4928 35 1 7.9543 -2.9902 0.7322 36 1 9.9807 -0.1328 0.3453 37 1 12.4406 -0.1187 0.3609 38 1 17.6330 -2.4896 0.6446 39 1 12.4661 -4.3945 0.2784 40 1 10.0063 -4.4090 0.2541 41 1 3.8285 -2.9192 1.1039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434864725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:16 Heat of formation + Delta-G solvation = -50.524216 kcal Electronic energy + Delta-G solvation = -27025.908852 eV Core-core repulsion = 22870.972519 eV Total energy + Delta-G solvation = -4154.936333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.20478 -41.42710 -40.57298 -39.84412 -38.15373 -36.32862 -35.49003 -34.16739 -33.41875 -32.22433 -31.90004 -30.34037 -29.20225 -27.34820 -25.75498 -24.77244 -23.94565 -23.16669 -22.09495 -21.47341 -19.98780 -19.44728 -19.09501 -18.85911 -18.26782 -17.74485 -17.24301 -16.64657 -16.54183 -16.35610 -16.04146 -15.82977 -15.53454 -15.49012 -15.24325 -14.99684 -14.75617 -14.54986 -14.36509 -14.16206 -13.78342 -13.60096 -13.35934 -13.30315 -13.21949 -13.08707 -12.64479 -12.50516 -12.15593 -12.13342 -11.50303 -11.38264 -11.32845 -11.07159 -10.92314 -10.58700 -10.54157 -9.87135 -9.50194 -8.62260 -8.44475 -6.11950 -0.63016 0.11301 0.50663 0.53282 1.33926 1.37985 1.48778 1.54571 1.73203 1.87518 2.00650 2.20596 2.70557 2.85037 3.03917 3.16976 3.49688 3.56650 3.67013 3.76251 3.84816 4.03397 4.05703 4.11046 4.48052 4.53747 4.55894 4.58404 4.68388 4.70611 4.74321 4.90147 4.98534 5.06776 5.15978 5.17809 5.27905 5.43308 5.52070 5.54222 5.65934 6.02728 6.10349 6.27608 6.34723 6.66095 6.99281 7.00854 7.07755 7.79347 8.78484 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.044069 B = 0.001684 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.212147 B =16625.597715 C =17079.523162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.506 3.494 3 O -0.573 6.573 4 N -0.651 5.651 5 C 0.130 3.870 6 C -0.100 4.100 7 C -0.091 4.091 8 C 0.042 3.958 9 C 0.564 3.436 10 O -0.557 6.557 11 N -0.631 5.631 12 C 0.058 3.942 13 C -0.073 4.073 14 C -0.187 4.187 15 C 0.110 3.890 16 O -0.229 6.229 17 C -0.414 4.414 18 H 0.106 0.894 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.021 2.979 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.254 1.254 25 C -0.217 4.217 26 C -0.076 4.076 27 N -0.443 5.443 28 C 0.087 3.913 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.439 0.561 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.428 0.572 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.272 0.728 39 H 0.135 0.865 40 H 0.158 0.842 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.231 -4.702 -0.057 38.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.297 3.703 3 O -0.451 6.451 4 N -0.299 5.299 5 C 0.030 3.970 6 C -0.128 4.128 7 C -0.112 4.112 8 C -0.095 4.095 9 C 0.352 3.648 10 O -0.434 6.434 11 N -0.276 5.276 12 C -0.035 4.035 13 C -0.093 4.093 14 C -0.206 4.206 15 C 0.059 3.941 16 O -0.136 6.136 17 C -0.490 4.490 18 H 0.124 0.876 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.840 3.160 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.178 1.178 25 C -0.237 4.237 26 C -0.096 4.096 27 N -0.154 5.154 28 C -0.077 4.077 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.281 0.719 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.267 0.733 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.153 0.847 40 H 0.176 0.824 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -36.628 -3.741 -0.040 36.818 hybrid contribution 0.186 -0.013 -0.313 0.365 sum -36.441 -3.754 -0.353 36.636 Atomic orbital electron populations 1.21983 0.86211 1.06713 1.07323 1.22060 0.92888 0.82171 0.73182 1.90782 1.71893 1.33185 1.49266 1.43479 1.03192 1.11575 1.71662 1.19127 0.85866 0.96895 0.95063 1.21624 0.93529 0.99874 0.97723 1.22014 0.94506 0.97410 0.97305 1.20604 0.92507 0.95457 1.00962 1.18254 0.86761 0.81350 0.78415 1.90808 1.69536 1.40679 1.42406 1.42947 1.03789 1.28050 1.52838 1.17406 0.82657 0.93796 1.09639 1.20709 0.92216 0.97846 0.98508 1.20221 0.93705 0.95986 1.10728 1.19863 0.84320 0.94985 0.94941 1.83966 1.14589 1.34022 1.81002 1.21833 0.91016 0.85560 1.50599 0.87648 1.26631 0.95953 1.03686 0.95838 1.70198 1.07523 1.30790 1.47384 0.84620 0.76796 0.74750 0.79870 1.18196 1.19888 1.17819 1.21130 0.94743 0.97564 1.10244 1.20829 0.92560 0.97267 0.98973 1.67467 1.10713 1.22911 1.14264 1.23272 0.87894 0.99101 0.97452 0.86055 0.89143 0.86173 0.71899 0.83345 0.83811 0.73262 0.85354 0.86699 0.91882 0.84709 0.82414 0.77301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.17 10.32 71.24 0.74 0.91 16 2 C 0.51 4.40 7.70 87.66 0.67 5.07 16 3 O -0.57 -11.55 14.74 -3.03 -0.04 -11.60 16 4 N -0.65 -3.07 5.33 -303.11 -1.62 -4.69 16 5 C 0.13 1.60 6.32 38.47 0.24 1.85 16 6 C -0.10 -1.83 8.75 22.55 0.20 -1.64 16 7 C -0.09 -2.06 9.62 22.59 0.22 -1.85 16 8 C 0.04 1.02 6.74 41.85 0.28 1.30 16 9 C 0.56 17.59 7.54 86.79 0.65 18.24 16 10 O -0.56 -21.36 14.02 -3.94 -0.06 -21.42 16 11 N -0.63 -18.40 5.32 -305.93 -1.63 -20.03 16 12 C 0.06 2.12 6.27 38.19 0.24 2.36 16 13 C -0.07 -3.01 8.65 22.38 0.19 -2.82 16 14 C -0.19 -8.82 9.98 22.37 0.22 -8.59 16 15 C 0.11 5.67 6.65 22.59 0.15 5.82 16 16 O -0.23 -14.09 9.75 -22.83 -0.22 -14.32 16 17 C -0.41 -24.20 9.44 67.91 0.64 -23.56 16 18 H 0.11 5.54 5.29 -2.91 -0.02 5.52 16 19 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 20 N -0.92 -57.23 13.67 21.61 0.30 -56.94 16 21 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 25 C -0.22 -9.47 9.12 22.37 0.20 -9.26 16 26 C -0.08 -2.69 9.96 22.38 0.22 -2.46 16 27 N -0.44 -8.36 9.53 -184.44 -1.76 -10.12 16 28 C 0.09 1.00 11.12 85.04 0.95 1.94 16 29 H 0.12 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.09 0.14 8.12 -2.39 -0.02 0.12 16 31 H 0.12 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.44 -1.98 8.82 -92.71 -0.82 -2.80 16 33 H 0.15 2.83 6.44 -2.91 -0.02 2.81 16 34 H 0.14 3.43 7.63 -2.91 -0.02 3.41 16 35 H 0.43 9.75 8.15 -92.71 -0.76 8.99 16 36 H 0.13 5.21 6.44 -2.91 -0.02 5.19 16 37 H 0.11 5.41 8.06 -2.91 -0.02 5.38 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.14 5.74 5.71 -2.91 -0.02 5.72 16 40 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 41 H 0.21 0.44 8.06 -2.91 -0.02 0.41 16 Total: -1.00 -87.55 362.27 2.84 -84.71 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.44 Total: 23.11 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 6.29 Total: -13.57 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -4.71 Total: -91.77 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.32 Total: -47.33 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -87.55 2.84 -84.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434864725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.185 kcal (2) G-P(sol) polarization free energy of solvation -87.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds