Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47085 * 2 1 4 4 C 1.50708 * 109.46704 * 119.99573 * 2 1 3 5 5 H 1.07996 * 120.00021 * 94.48500 * 4 2 1 6 6 C 1.37878 * 119.99866 * 274.48049 * 4 2 1 7 7 N 1.31516 * 119.99802 * 6.52098 * 6 4 2 8 8 Si 1.86800 * 119.99998 * 186.52717 * 6 4 2 9 9 H 1.48500 * 109.46721 * 269.99621 * 8 6 4 10 10 H 1.48497 * 109.47032 * 29.99237 * 8 6 4 11 11 H 1.48497 * 109.47344 * 150.00025 * 8 6 4 12 12 N 1.46895 * 109.47247 * 239.99134 * 2 1 3 13 13 C 1.46900 * 110.99758 * 85.00495 * 12 2 1 14 14 H 1.09007 * 109.46815 * 324.99631 * 13 12 2 15 15 C 1.53001 * 109.47377 * 84.99800 * 13 12 2 16 16 C 1.50703 * 109.46929 * 205.00033 * 13 12 2 17 17 O 1.21286 * 120.00390 * 359.97438 * 16 13 12 18 18 N 1.34780 * 119.99467 * 179.97438 * 16 13 12 19 19 C 1.39934 * 119.99397 * 184.51701 * 18 16 13 20 20 C 1.38888 * 120.07413 * 324.09077 * 19 18 16 21 21 C 1.38093 * 119.93015 * 179.74538 * 20 19 18 22 22 C 1.38301 * 120.06501 * 0.52684 * 21 20 19 23 23 C 1.38256 * 120.14808 * 359.72960 * 22 21 20 24 24 S 1.76198 * 119.96710 * 179.97438 * 23 22 21 25 25 N 1.65596 * 107.21806 * 270.01654 * 24 23 22 26 26 O 1.42096 * 106.40438 * 23.56088 * 24 23 22 27 27 O 1.42102 * 106.40083 * 156.47970 * 24 23 22 28 28 C 1.38139 * 120.06876 * 0.02562 * 23 22 21 29 29 H 1.09001 * 109.46996 * 174.96066 * 1 2 3 30 30 H 1.08997 * 109.47348 * 294.96342 * 1 2 3 31 31 H 1.09003 * 109.46807 * 54.96374 * 1 2 3 32 32 H 0.96993 * 120.00248 * 355.09630 * 7 6 4 33 33 H 1.00904 * 111.00167 * 208.95516 * 12 2 1 34 34 H 1.08997 * 109.46727 * 60.00076 * 15 13 12 35 35 H 1.08995 * 109.46932 * 180.02562 * 15 13 12 36 36 H 1.08998 * 109.46880 * 300.00132 * 15 13 12 37 37 H 0.96994 * 120.00607 * 4.51763 * 18 16 13 38 38 H 1.08003 * 120.03335 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.96576 * 180.23428 * 21 20 19 40 40 H 1.08006 * 119.92509 * 179.74873 * 22 21 20 41 41 H 0.96998 * 119.99833 * 149.99702 * 25 24 23 42 42 H 0.97002 * 120.00011 * 330.00703 * 25 24 23 43 43 H 1.07996 * 120.03376 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.2812 -1.7602 1.1843 6 6 2.1741 -0.0199 2.4156 7 7 1.7518 1.2223 2.5074 8 14 2.9660 -0.8486 3.8905 9 1 1.9202 -1.5259 4.6983 10 1 3.9564 -1.8511 3.4223 11 1 3.6509 0.1724 4.7234 12 7 2.0197 -0.6926 -1.1993 13 6 2.0826 0.2223 -2.3468 14 1 1.2577 0.9327 -2.2907 15 6 3.4112 0.9806 -2.3223 16 6 1.9788 -0.5680 -3.6257 17 8 1.8642 -1.7748 -3.5853 18 7 2.0132 0.0662 -4.8145 19 6 1.8222 -0.6553 -5.9981 20 6 2.3158 -1.9485 -6.1123 21 6 2.1210 -2.6597 -7.2799 22 6 1.4446 -2.0816 -8.3387 23 6 0.9566 -0.7926 -8.2302 24 16 0.0962 -0.0605 -9.5823 25 7 1.2228 0.7073 -10.5222 26 8 -0.4129 -1.1336 -10.3623 27 8 -0.7268 0.9578 -9.0301 28 6 1.1438 -0.0777 -7.0631 29 1 -0.3633 -1.0237 -0.0903 30 1 -0.3634 0.4337 0.9316 31 1 -0.3633 0.5900 -0.8415 32 1 1.4060 1.6762 1.7230 33 1 2.9174 -1.1207 -1.0285 34 1 4.2360 0.2703 -2.3784 35 1 3.4576 1.6598 -3.1735 36 1 3.4863 1.5523 -1.3973 37 1 2.1705 1.0227 -4.8495 38 1 2.8482 -2.3987 -5.2875 39 1 2.5013 -3.6667 -7.3679 40 1 1.2971 -2.6385 -9.2523 41 1 1.0803 0.7926 -11.4779 42 1 2.0254 1.0716 -10.1171 43 1 0.7620 0.9290 -6.9788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460313654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -114.394251 kcal Electronic energy + Delta-G solvation = -27061.129895 eV Core-core repulsion = 23038.867901 eV Total energy + Delta-G solvation = -4022.261995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77656 -39.85117 -38.28368 -38.02421 -36.95737 -35.96606 -35.12724 -34.04613 -32.44743 -32.33348 -30.67638 -28.81847 -26.94830 -25.67603 -24.62200 -23.53133 -22.29968 -21.37407 -20.46555 -19.62222 -19.36854 -18.34464 -18.12416 -17.72792 -17.50793 -17.08325 -16.50648 -16.47932 -16.03431 -15.92498 -15.62344 -15.32483 -15.06247 -14.88486 -14.49947 -14.17966 -13.94734 -13.54666 -13.45944 -13.27404 -13.26221 -13.21328 -13.16921 -13.03987 -12.78919 -12.75971 -12.60254 -12.46710 -12.21840 -12.06256 -11.93085 -11.55134 -11.32970 -10.93394 -10.67191 -10.42768 -10.40639 -9.40956 -9.16317 -8.64682 -6.36462 -0.65658 -0.30308 0.07425 1.45666 1.54153 1.60948 1.78986 1.80839 2.16375 2.41215 2.55025 2.75727 3.14911 3.41193 3.47090 3.56636 3.79829 3.98721 4.00149 4.01962 4.06171 4.30055 4.37622 4.51371 4.57035 4.61924 4.68314 4.80171 4.86081 4.93953 5.02066 5.07732 5.11640 5.20872 5.27469 5.29225 5.51986 5.77228 5.83839 6.00294 6.26268 6.37473 6.47136 6.55865 6.74702 7.06157 7.44380 8.75507 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.002100 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.353396 B =13330.932657 C =13669.356196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.203 3.797 3 H -0.004 1.004 4 C -0.610 4.610 5 H 0.045 0.955 6 C -0.023 4.023 7 N -0.932 5.932 8 Si 1.115 2.885 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.282 1.282 12 N -0.672 5.672 13 C 0.068 3.932 14 H 0.104 0.896 15 C -0.166 4.166 16 C 0.525 3.475 17 O -0.538 6.538 18 N -0.664 5.664 19 C 0.117 3.883 20 C -0.082 4.082 21 C -0.122 4.122 22 C -0.036 4.036 23 C -0.658 4.658 24 S 2.733 3.267 25 N -1.229 6.229 26 O -0.991 6.991 27 O -0.994 6.994 28 C -0.053 4.053 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.339 0.661 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.428 0.572 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.431 0.569 42 H 0.430 0.570 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 1.393 -28.397 28.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.013 0.987 4 C -0.648 4.648 5 H 0.063 0.937 6 C -0.223 4.223 7 N -0.570 5.570 8 Si 0.938 3.062 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.207 1.207 12 N -0.304 5.304 13 C -0.046 4.046 14 H 0.122 0.878 15 C -0.225 4.225 16 C 0.313 3.687 17 O -0.412 6.412 18 N -0.312 5.312 19 C 0.022 3.978 20 C -0.102 4.102 21 C -0.141 4.141 22 C -0.056 4.056 23 C -0.746 4.746 24 S 2.820 3.180 25 N -0.909 5.909 26 O -0.980 6.980 27 O -0.983 6.983 28 C -0.075 4.075 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.268 0.732 38 H 0.147 0.853 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.264 0.736 42 H 0.261 0.739 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.810 0.395 -26.903 27.174 hybrid contribution 1.024 0.692 -0.682 1.411 sum 4.834 1.087 -27.584 28.026 Atomic orbital electron populations 1.21694 0.98249 0.99353 0.98167 1.19118 0.91948 0.92061 0.87397 0.98668 1.22291 1.47787 0.97557 0.97182 0.93684 1.27120 0.94999 0.96136 1.04012 1.70891 1.40504 1.13311 1.32269 0.82933 0.76174 0.74635 0.72465 1.20505 1.19813 1.20732 1.60258 1.33368 1.32316 1.04422 1.21533 1.00412 0.93541 0.89154 0.87782 1.22361 0.95469 1.00887 1.03811 1.21123 0.74283 0.88216 0.85123 1.90659 1.47447 1.15896 1.87219 1.43451 1.71617 1.13039 1.03142 1.17979 0.99021 0.93729 0.87065 1.21748 0.96322 0.93904 0.98267 1.21502 0.99216 1.01311 0.92061 1.21219 0.92053 0.92324 0.99982 1.30547 1.20551 1.06809 1.16691 1.00458 0.72477 0.72719 0.72308 1.52685 1.39922 1.76174 1.22124 1.93562 1.78425 1.56489 1.69546 1.93592 1.65723 1.59116 1.79898 1.20864 0.93905 1.01308 0.91385 0.94597 0.95149 0.94531 0.92854 0.84250 0.92006 0.88326 0.92703 0.73248 0.85293 0.82448 0.81893 0.73554 0.73939 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 9.24 71.98 0.67 -4.82 16 2 C 0.20 9.86 2.04 44.17 0.09 9.95 16 3 H 0.00 -0.22 5.93 -2.39 -0.01 -0.23 16 4 C -0.61 -33.44 8.28 25.60 0.21 -33.23 16 5 H 0.04 2.53 7.82 -2.91 -0.02 2.51 16 6 C -0.02 -1.28 5.45 84.65 0.46 -0.82 16 7 N -0.93 -54.50 13.63 21.45 0.29 -54.21 16 8 Si 1.12 49.38 29.91 68.60 2.05 51.43 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.67 -28.37 5.54 -477.14 -2.64 -31.01 16 13 C 0.07 2.15 2.82 44.17 0.12 2.27 16 14 H 0.10 3.22 7.16 -2.38 -0.02 3.20 16 15 C -0.17 -4.25 9.04 71.98 0.65 -3.60 16 16 C 0.52 15.89 7.06 87.66 0.62 16.51 16 17 O -0.54 -20.63 13.92 -3.05 -0.04 -20.67 16 18 N -0.66 -14.16 5.26 -303.49 -1.60 -15.76 16 19 C 0.12 2.56 6.28 38.15 0.24 2.80 16 20 C -0.08 -1.90 8.69 22.39 0.19 -1.71 16 21 C -0.12 -2.17 10.04 22.25 0.22 -1.94 16 22 C -0.04 -0.56 9.52 22.29 0.21 -0.35 16 23 C -0.66 -10.53 5.97 22.25 0.13 -10.40 16 24 S 2.73 39.15 6.28 -56.49 -0.35 38.79 16 25 N -1.23 -5.91 9.52 37.02 0.35 -5.56 16 26 O -0.99 -20.08 17.28 -128.00 -2.21 -22.29 16 27 O -0.99 -21.52 17.28 -128.00 -2.21 -23.73 16 28 C -0.05 -0.94 9.44 22.39 0.21 -0.73 16 29 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 31 H 0.04 1.50 7.50 -2.39 -0.02 1.48 16 32 H 0.26 15.21 6.39 -92.71 -0.59 14.62 16 33 H 0.34 14.67 8.09 -89.69 -0.73 13.95 16 34 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.10 1.63 7.47 -2.39 -0.02 1.62 16 36 H 0.05 1.66 7.43 -2.39 -0.02 1.64 16 37 H 0.43 5.83 8.12 -92.71 -0.75 5.08 16 38 H 0.13 3.51 6.29 -2.91 -0.02 3.49 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.16 1.83 7.61 -2.91 -0.02 1.81 16 41 H 0.43 0.65 8.96 -96.75 -0.87 -0.22 16 42 H 0.43 0.05 8.96 -96.74 -0.87 -0.81 16 43 H 0.16 2.22 7.61 -2.91 -0.02 2.20 16 Total: -1.00 -81.13 371.33 -4.26 -85.39 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -1.94 Total: 23.68 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 4.04 Total: -26.06 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -3.59 Total: -106.54 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -4.47 Total: -66.70 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.05 Total: 51.43 kcal Atomic # 16 Polarization: 39.15 SS G_CDS: -0.35 Total: 38.79 kcal Total: -81.13 -4.26 -85.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460313654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.003 kcal (2) G-P(sol) polarization free energy of solvation -81.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds