Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35970 * 117.00297 * 2 1 4 4 C 1.37569 * 120.82660 * 179.97438 * 3 2 1 5 5 C 1.38038 * 114.24703 * 180.02562 * 4 3 2 6 6 C 1.47113 * 127.75478 * 179.97438 * 5 4 3 7 7 O 1.21629 * 120.00265 * 339.27212 * 6 5 4 8 8 N 1.34772 * 119.99860 * 159.26995 * 6 5 4 9 9 C 1.47158 * 120.98299 * 353.42118 * 8 6 5 10 10 C 1.53297 * 108.38643 * 230.55509 * 9 8 6 11 11 O 1.42965 * 109.21927 * 307.69806 * 10 9 8 12 12 C 1.42956 * 114.16820 * 62.58252 * 11 10 9 13 13 H 1.09005 * 109.51407 * 57.34024 * 12 11 10 14 14 C 1.53007 * 109.51095 * 177.49160 * 12 11 10 15 15 H 1.09008 * 109.46867 * 184.74388 * 14 12 11 16 16 C 1.52998 * 109.47098 * 304.74361 * 14 12 11 17 17 N 1.46502 * 109.46856 * 64.74832 * 14 12 11 18 18 C 1.36932 * 119.99562 * 155.00047 * 17 14 12 19 19 H 1.07998 * 120.00212 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99898 * 179.97438 * 18 17 14 21 21 N 1.31629 * 119.99888 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00238 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47147 * 90.00546 * 22 20 18 24 24 H 1.48506 * 109.47045 * 210.00021 * 22 20 18 25 25 H 1.48493 * 109.47224 * 330.00187 * 22 20 18 26 26 C 1.47155 * 120.98667 * 173.44264 * 8 6 5 27 27 S 1.77229 * 104.48392 * 0.23848 * 5 4 3 28 28 N 1.30359 * 120.82243 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47029 * 300.00370 * 1 2 3 30 30 H 1.09007 * 109.47032 * 59.99544 * 1 2 3 31 31 H 1.09001 * 109.47406 * 180.02562 * 1 2 3 32 32 H 1.07996 * 122.87139 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.68002 * 350.27991 * 9 8 6 34 34 H 1.09007 * 109.68097 * 110.79627 * 9 8 6 35 35 H 1.08998 * 109.51264 * 67.61764 * 10 9 8 36 36 H 1.09002 * 109.51062 * 187.77337 * 10 9 8 37 37 H 1.09001 * 109.47609 * 299.99943 * 16 14 12 38 38 H 1.09001 * 109.46877 * 60.00255 * 16 14 12 39 39 H 1.08997 * 109.47274 * 180.02562 * 16 14 12 40 40 H 0.97000 * 119.99957 * 334.99359 * 17 14 12 41 41 H 0.97000 * 119.99535 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.68159 * 249.17347 * 26 8 6 43 43 H 1.09009 * 109.67570 * 9.72084 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3032 0.0005 5 6 3.9006 2.5968 0.0010 6 6 5.3049 3.0351 0.0022 7 8 6.1787 2.2758 0.3756 8 7 5.6233 4.2779 -0.4106 9 6 4.6071 5.1638 -1.0006 10 6 5.1539 5.7137 -2.3229 11 8 6.4430 6.2887 -2.0963 12 6 7.4278 5.3572 -1.6423 13 1 7.5211 4.5454 -2.3638 14 6 8.7745 6.0685 -1.4949 15 1 9.5423 5.3414 -1.2304 16 6 9.1435 6.7414 -2.8185 17 7 8.6784 7.0823 -0.4416 18 6 9.8040 7.4833 0.2272 19 1 10.7624 7.0520 -0.0214 20 6 9.7131 8.4443 1.2248 21 7 8.5450 8.9696 1.5282 22 14 11.2484 8.9909 2.1377 23 1 11.8622 10.1425 1.4289 24 1 10.8847 9.3968 3.5192 25 1 12.2188 7.8682 2.1910 26 6 6.9975 4.7891 -0.2852 27 16 2.4472 3.6110 0.0079 28 7 1.3521 2.3149 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0642 0.4373 0.0014 33 1 3.6928 4.6004 -1.1873 34 1 4.3977 5.9877 -0.3183 35 1 5.2389 4.9032 -3.0468 36 1 4.4772 6.4768 -2.7074 37 1 9.2149 5.9871 -3.6021 38 1 8.3756 7.4684 -3.0829 39 1 10.1030 7.2477 -2.7136 40 1 7.8176 7.4694 -0.2182 41 1 8.4815 9.6408 2.2255 42 1 7.0292 5.5755 0.4688 43 1 7.6662 3.9775 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485633340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = -34.834562 kcal Electronic energy + Delta-G solvation = -27772.605429 eV Core-core repulsion = 23753.793402 eV Total energy + Delta-G solvation = -4018.812028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64782 -40.23798 -38.50391 -36.71808 -35.61210 -34.68315 -32.40073 -31.70710 -30.27125 -28.64863 -28.42469 -27.78528 -25.28534 -24.05793 -23.59942 -22.64874 -21.24868 -19.80341 -19.40329 -18.74124 -17.99767 -17.35344 -16.71362 -16.52438 -16.45986 -15.90477 -15.69227 -15.07467 -15.00004 -14.71264 -14.28521 -14.23748 -13.78972 -13.68904 -13.40589 -13.28857 -13.05884 -12.54516 -12.39040 -12.10436 -11.92360 -11.77289 -11.50479 -11.37063 -11.26553 -10.98519 -10.84806 -10.81062 -10.53162 -10.41601 -10.20641 -10.03140 -9.95008 -9.92268 -9.60299 -8.94384 -8.63971 -8.53410 -6.94887 -5.75532 -3.04122 -0.16517 0.79223 1.21276 1.91764 2.42400 2.80089 2.95100 3.44739 3.50464 3.51563 3.88960 4.05415 4.48535 4.59536 4.68322 4.76511 4.80693 4.86731 4.90594 5.01550 5.15696 5.20083 5.31015 5.33804 5.43028 5.58529 5.62322 5.68898 5.75772 5.78334 5.95295 6.16052 6.22711 6.37458 6.45192 6.64453 6.66091 6.77163 7.10978 7.12911 7.39559 7.71541 7.81732 8.42649 9.55078 10.10724 10.47657 11.46657 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019709 B = 0.002644 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.347336 B =10587.323668 C =10951.519245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.296 6.296 3 C 0.306 3.694 4 C -0.129 4.129 5 C -0.181 4.181 6 C 0.592 3.408 7 O -0.513 6.513 8 N -0.600 5.600 9 C 0.057 3.943 10 C 0.053 3.947 11 O -0.356 6.356 12 C 0.077 3.923 13 H 0.058 0.942 14 C 0.182 3.818 15 H 0.061 0.939 16 C -0.160 4.160 17 N -0.718 5.718 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.087 3.913 27 S 0.307 5.693 28 N -0.528 5.528 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.033 0.967 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.389 0.611 41 H 0.254 0.746 42 H 0.106 0.894 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.474 -14.487 -7.437 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.093 3.907 4 C -0.167 4.167 5 C -0.312 4.312 6 C 0.377 3.623 7 O -0.390 6.390 8 N -0.334 5.334 9 C -0.068 4.068 10 C -0.026 4.026 11 O -0.274 6.274 12 C 0.017 3.983 13 H 0.076 0.924 14 C 0.072 3.928 15 H 0.079 0.921 16 C -0.220 4.220 17 N -0.360 5.360 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.034 4.034 27 S 0.458 5.542 28 N -0.368 5.368 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.195 0.805 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.224 0.776 41 H 0.064 0.936 42 H 0.124 0.876 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.187 -13.369 -7.143 22.917 hybrid contribution 0.999 -1.104 0.649 1.624 sum -16.189 -14.473 -6.493 22.665 Atomic orbital electron populations 1.22982 0.76639 1.03624 1.02605 1.86306 1.23054 1.22689 1.88190 1.19868 0.89696 0.85319 0.95822 1.20749 0.92472 0.98470 1.04974 1.26041 0.99500 0.97760 1.07915 1.16677 0.85155 0.81849 0.78633 1.90858 1.47956 1.52634 1.47533 1.48074 1.11917 1.12999 1.60370 1.22946 0.90912 0.95131 0.97822 1.22843 0.86853 0.98912 0.93944 1.88133 1.17985 1.34831 1.86437 1.22963 0.90403 0.91732 0.93164 0.92414 1.20269 0.90592 0.91767 0.90189 0.92076 1.22326 1.01911 1.00352 0.97387 1.42414 1.08642 1.45633 1.39356 1.19230 0.87986 1.17361 1.12441 0.91163 1.24719 0.96624 0.99675 0.99764 1.69668 1.22294 1.31703 1.34176 0.86225 0.82512 0.78512 0.79135 1.21819 1.21877 1.20783 1.22619 0.80056 1.00882 0.99849 1.85248 0.89069 1.11155 1.68739 1.76381 1.28119 1.01906 1.30420 0.92089 0.92088 0.87973 0.80524 0.89629 0.88751 0.92965 0.87394 0.94841 0.92427 0.92764 0.77607 0.93571 0.87591 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.43 101.05 1.05 1.31 16 2 O -0.30 -2.96 10.51 -19.65 -0.21 -3.16 16 3 C 0.31 3.39 7.36 -18.42 -0.14 3.26 16 4 C -0.13 -1.45 10.15 -39.90 -0.41 -1.85 16 5 C -0.18 -2.18 6.20 -36.06 -0.22 -2.40 16 6 C 0.59 8.66 7.67 -12.66 -0.10 8.57 16 7 O -0.51 -9.06 16.48 5.25 0.09 -8.98 16 8 N -0.60 -8.48 3.02 -173.65 -0.52 -9.00 16 9 C 0.06 0.65 5.77 -3.53 -0.02 0.63 16 10 C 0.05 0.60 6.99 37.31 0.26 0.86 16 11 O -0.36 -5.61 9.24 -35.23 -0.33 -5.93 16 12 C 0.08 1.23 2.57 -26.58 -0.07 1.16 16 13 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.18 3.46 2.80 -67.93 -0.19 3.27 16 15 H 0.06 1.16 8.08 -51.92 -0.42 0.74 16 16 C -0.16 -2.84 9.30 37.16 0.35 -2.50 16 17 N -0.72 -17.04 4.24 -53.42 -0.23 -17.26 16 18 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 22 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.09 1.44 5.84 -3.53 -0.02 1.42 16 27 S 0.31 3.18 19.99 -107.50 -2.15 1.03 16 28 N -0.53 -5.97 11.03 29.19 0.32 -5.64 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.13 -51.92 -0.42 -0.01 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.09 0.81 3.82 -24.17 -0.09 0.72 16 34 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.08 7.57 -51.93 -0.39 0.68 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.39 9.94 7.08 -40.82 -0.29 9.65 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.11 2.06 6.94 -51.93 -0.36 1.70 16 43 H 0.10 1.75 7.06 -51.92 -0.37 1.39 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -31.85 366.94 -7.23 -39.08 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.69 Total: 7.16 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 0.25 Total: 6.76 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.30 Total: -58.56 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.45 Total: -18.07 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.15 Total: 1.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.85 -7.23 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485633340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.244 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds