Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35970 * 117.00297 * 2 1 4 4 C 1.37569 * 120.82660 * 179.97438 * 3 2 1 5 5 C 1.38038 * 114.24703 * 180.02562 * 4 3 2 6 6 C 1.47113 * 127.75478 * 179.97438 * 5 4 3 7 7 O 1.21629 * 120.00265 * 339.27212 * 6 5 4 8 8 N 1.34772 * 119.99860 * 159.26995 * 6 5 4 9 9 C 1.47158 * 120.98299 * 353.42118 * 8 6 5 10 10 C 1.53297 * 108.38643 * 230.55509 * 9 8 6 11 11 O 1.42965 * 109.21927 * 307.69806 * 10 9 8 12 12 C 1.42956 * 114.16820 * 62.58252 * 11 10 9 13 13 H 1.09005 * 109.51407 * 57.34024 * 12 11 10 14 14 C 1.53007 * 109.51095 * 177.49160 * 12 11 10 15 15 H 1.09008 * 109.46867 * 184.74388 * 14 12 11 16 16 C 1.52998 * 109.47098 * 304.74361 * 14 12 11 17 17 N 1.46502 * 109.46856 * 64.74832 * 14 12 11 18 18 C 1.36932 * 119.99562 * 155.00047 * 17 14 12 19 19 H 1.07998 * 120.00212 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99898 * 179.97438 * 18 17 14 21 21 N 1.31629 * 119.99888 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00238 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47147 * 90.00546 * 22 20 18 24 24 H 1.48506 * 109.47045 * 210.00021 * 22 20 18 25 25 H 1.48493 * 109.47224 * 330.00187 * 22 20 18 26 26 C 1.47155 * 120.98667 * 173.44264 * 8 6 5 27 27 S 1.77229 * 104.48392 * 0.23848 * 5 4 3 28 28 N 1.30359 * 120.82243 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47029 * 300.00370 * 1 2 3 30 30 H 1.09007 * 109.47032 * 59.99544 * 1 2 3 31 31 H 1.09001 * 109.47406 * 180.02562 * 1 2 3 32 32 H 1.07996 * 122.87139 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.68002 * 350.27991 * 9 8 6 34 34 H 1.09007 * 109.68097 * 110.79627 * 9 8 6 35 35 H 1.08998 * 109.51264 * 67.61764 * 10 9 8 36 36 H 1.09002 * 109.51062 * 187.77337 * 10 9 8 37 37 H 1.09001 * 109.47609 * 299.99943 * 16 14 12 38 38 H 1.09001 * 109.46877 * 60.00255 * 16 14 12 39 39 H 1.08997 * 109.47274 * 180.02562 * 16 14 12 40 40 H 0.97000 * 119.99957 * 334.99359 * 17 14 12 41 41 H 0.97000 * 119.99535 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.68159 * 249.17347 * 26 8 6 43 43 H 1.09009 * 109.67570 * 9.72084 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3032 0.0005 5 6 3.9006 2.5968 0.0010 6 6 5.3049 3.0351 0.0022 7 8 6.1787 2.2758 0.3756 8 7 5.6233 4.2779 -0.4106 9 6 4.6071 5.1638 -1.0006 10 6 5.1539 5.7137 -2.3229 11 8 6.4430 6.2887 -2.0963 12 6 7.4278 5.3572 -1.6423 13 1 7.5211 4.5454 -2.3638 14 6 8.7745 6.0685 -1.4949 15 1 9.5423 5.3414 -1.2304 16 6 9.1435 6.7414 -2.8185 17 7 8.6784 7.0823 -0.4416 18 6 9.8040 7.4833 0.2272 19 1 10.7624 7.0520 -0.0214 20 6 9.7131 8.4443 1.2248 21 7 8.5450 8.9696 1.5282 22 14 11.2484 8.9909 2.1377 23 1 11.8622 10.1425 1.4289 24 1 10.8847 9.3968 3.5192 25 1 12.2188 7.8682 2.1910 26 6 6.9975 4.7891 -0.2852 27 16 2.4472 3.6110 0.0079 28 7 1.3521 2.3149 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0642 0.4373 0.0014 33 1 3.6928 4.6004 -1.1873 34 1 4.3977 5.9877 -0.3183 35 1 5.2389 4.9032 -3.0468 36 1 4.4772 6.4768 -2.7074 37 1 9.2149 5.9871 -3.6021 38 1 8.3756 7.4684 -3.0829 39 1 10.1030 7.2477 -2.7136 40 1 7.8176 7.4694 -0.2182 41 1 8.4815 9.6408 2.2255 42 1 7.0292 5.5755 0.4688 43 1 7.6662 3.9775 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485633340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = -58.836727 kcal Electronic energy + Delta-G solvation = -27773.646241 eV Core-core repulsion = 23753.793402 eV Total energy + Delta-G solvation = -4019.852840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69819 -41.15530 -39.70504 -37.54673 -37.13752 -35.95125 -34.16524 -32.75549 -31.60417 -30.12876 -29.53973 -28.69186 -26.39667 -25.59187 -24.97780 -23.74662 -22.28312 -21.21719 -20.39298 -19.79972 -19.26585 -18.80246 -17.75821 -17.58100 -17.34039 -17.12249 -16.87394 -16.33784 -16.15742 -15.87026 -15.74791 -15.31489 -15.10324 -14.78018 -14.66940 -14.56642 -14.27522 -13.95690 -13.49820 -13.27126 -13.03937 -13.00325 -12.76033 -12.61031 -12.58088 -12.46204 -12.16431 -12.12607 -11.94041 -11.79423 -11.66606 -11.61611 -11.23199 -11.09006 -10.95473 -10.91295 -9.74824 -9.45192 -8.92075 -7.87189 -5.13753 -1.09511 -0.09510 0.36154 1.01550 1.39018 1.50740 1.51008 1.59045 1.72053 2.12583 2.60478 2.77677 3.08544 3.47060 3.59329 3.65635 3.83259 3.91831 3.97803 4.03264 4.06343 4.23467 4.28450 4.30073 4.35128 4.46538 4.53572 4.63380 4.71292 4.72271 4.79674 4.86732 4.96575 4.98646 5.11140 5.15021 5.27922 5.58329 5.65961 5.90976 6.00281 6.24794 6.35018 6.67057 7.42360 8.17760 8.42917 9.35871 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019709 B = 0.002644 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.347336 B =10587.323668 C =10951.519245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.304 6.304 3 C 0.304 3.696 4 C -0.121 4.121 5 C -0.199 4.199 6 C 0.593 3.407 7 O -0.551 6.551 8 N -0.599 5.599 9 C 0.056 3.944 10 C 0.048 3.952 11 O -0.378 6.378 12 C 0.091 3.909 13 H 0.082 0.918 14 C 0.173 3.827 15 H 0.062 0.938 16 C -0.148 4.148 17 N -0.726 5.726 18 C -0.232 4.232 19 H 0.076 0.924 20 C -0.074 4.074 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.290 1.290 24 H -0.300 1.300 25 H -0.271 1.271 26 C 0.096 3.904 27 S 0.341 5.659 28 N -0.535 5.535 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.131 0.869 32 H 0.184 0.816 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.378 0.622 41 H 0.248 0.752 42 H 0.072 0.928 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.640 -15.649 -8.840 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.091 3.909 4 C -0.159 4.159 5 C -0.330 4.330 6 C 0.380 3.620 7 O -0.430 6.430 8 N -0.332 5.332 9 C -0.068 4.068 10 C -0.029 4.029 11 O -0.297 6.297 12 C 0.031 3.969 13 H 0.099 0.901 14 C 0.064 3.936 15 H 0.080 0.920 16 C -0.208 4.208 17 N -0.367 5.367 18 C -0.364 4.364 19 H 0.093 0.907 20 C -0.267 4.267 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.218 1.218 24 H -0.227 1.227 25 H -0.196 1.196 26 C -0.026 4.026 27 S 0.492 5.508 28 N -0.376 5.376 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.201 0.799 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.211 0.789 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.366 -14.555 -8.595 24.960 hybrid contribution 1.230 -0.841 1.020 1.806 sum -17.135 -15.395 -7.575 24.249 Atomic orbital electron populations 1.23245 0.74977 1.05588 1.02553 1.86312 1.24703 1.22059 1.87921 1.19868 0.89640 0.85697 0.95712 1.20873 0.92812 0.98461 1.03804 1.25722 0.98765 0.98783 1.09731 1.16937 0.85898 0.81490 0.77684 1.90831 1.49352 1.53693 1.49154 1.48074 1.11514 1.13305 1.60276 1.23131 0.90983 0.94903 0.97814 1.23165 0.85266 1.00399 0.94090 1.88095 1.19574 1.35588 1.86398 1.22671 0.89262 0.91709 0.93230 0.90071 1.20509 0.92754 0.90870 0.89431 0.91996 1.22152 1.00467 1.00727 0.97438 1.42519 1.07290 1.46461 1.40444 1.19598 0.88988 1.16139 1.11643 0.90659 1.25430 0.99077 1.00776 1.01378 1.69816 1.24085 1.32735 1.35062 0.85266 0.79702 0.78163 0.77398 1.21793 1.22681 1.19622 1.22260 0.81511 0.99389 0.99456 1.85073 0.87492 1.10156 1.68057 1.76350 1.28515 1.02297 1.30479 0.92289 0.91918 0.85114 0.79864 0.87475 0.88938 0.91166 0.84588 0.91456 0.93441 0.94404 0.78929 0.94326 0.91012 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.43 113.37 1.18 1.54 16 2 O -0.30 -5.50 10.51 -93.21 -0.98 -6.48 16 3 C 0.30 6.21 7.36 84.75 0.62 6.84 16 4 C -0.12 -2.57 10.15 22.06 0.22 -2.34 16 5 C -0.20 -4.57 6.20 24.55 0.15 -4.42 16 6 C 0.59 17.17 7.67 86.57 0.66 17.84 16 7 O -0.55 -19.69 16.48 -4.12 -0.07 -19.76 16 8 N -0.60 -16.65 3.02 -821.56 -2.48 -19.13 16 9 C 0.06 1.18 5.77 86.35 0.50 1.68 16 10 C 0.05 0.97 6.99 72.08 0.50 1.48 16 11 O -0.38 -11.38 9.24 -148.98 -1.38 -12.76 16 12 C 0.09 2.82 2.57 30.69 0.08 2.90 16 13 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 14 C 0.17 6.49 2.80 44.99 0.13 6.62 16 15 H 0.06 2.31 8.08 -2.38 -0.02 2.29 16 16 C -0.15 -5.08 9.30 71.98 0.67 -4.41 16 17 N -0.73 -34.97 4.24 -322.93 -1.37 -36.34 16 18 C -0.23 -12.48 9.93 84.03 0.83 -11.64 16 19 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 22 Si 0.96 46.09 29.55 68.60 2.03 48.12 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 C 0.10 3.22 5.84 86.35 0.50 3.73 16 27 S 0.34 6.42 19.99 -56.49 -1.13 5.29 16 28 N -0.54 -11.06 11.03 -175.20 -1.93 -12.99 16 29 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16 31 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 33 H 0.11 1.78 3.82 -20.04 -0.08 1.70 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.72 7.57 -2.39 -0.02 1.70 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.38 19.83 7.08 -92.71 -0.66 19.18 16 41 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.07 2.92 6.94 -2.39 -0.02 2.90 16 43 H 0.09 3.20 7.06 -2.38 -0.02 3.18 16 Total: -1.00 -69.50 366.94 -0.17 -69.67 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.33 Total: 26.35 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.53 Total: 16.06 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -5.50 Total: -126.48 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -2.42 Total: -39.00 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.13 Total: 5.29 kcal Total: -69.50 -0.17 -69.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485633340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.832 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds