Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47329 * 2 1 4 4 C 1.47196 * 109.47168 * 119.99972 * 2 1 3 5 5 N 2.60800 * 109.46930 * 119.99751 * 2 1 3 6 6 C 1.50705 * 109.47466 * 239.99676 * 2 1 3 7 7 O 1.21277 * 120.00141 * 239.99993 * 6 2 1 8 8 N 1.34777 * 119.99423 * 59.72363 * 6 2 1 9 9 C 1.46499 * 119.99597 * 175.37311 * 8 6 2 10 10 C 1.52999 * 112.94772 * 303.26645 * 9 8 6 11 11 C 1.52996 * 109.47041 * 303.67221 * 10 9 8 12 12 O 1.42895 * 109.47180 * 175.19257 * 11 10 9 13 13 C 1.53954 * 113.74201 * 171.67417 * 9 8 6 14 14 N 1.47927 * 85.99602 * 269.20623 * 13 9 8 15 15 C 1.34779 * 134.49841 * 155.33370 * 14 13 9 16 16 O 1.21283 * 119.99851 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00158 * 0.03266 * 15 14 13 18 18 S 1.81004 * 109.47167 * 179.97438 * 17 15 14 19 19 C 1.76200 * 100.00020 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99613 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99859 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99659 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00146 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47100 * 89.99522 * 23 21 19 25 25 H 1.48501 * 109.46953 * 209.99869 * 23 21 19 26 26 H 1.48498 * 109.46970 * 329.99736 * 23 21 19 27 27 C 1.47581 * 91.01029 * 335.35933 * 14 13 9 28 28 H 1.09001 * 109.46635 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47312 * 299.99976 * 1 2 3 30 30 H 1.08999 * 109.46904 * 60.00118 * 1 2 3 31 31 H 0.97001 * 120.00478 * 355.37016 * 8 6 2 32 32 H 1.09002 * 109.46765 * 63.66899 * 10 9 8 33 33 H 1.08994 * 109.47161 * 183.67256 * 10 9 8 34 34 H 1.09003 * 109.47505 * 295.19580 * 11 10 9 35 35 H 1.09005 * 109.47342 * 55.19264 * 11 10 9 36 36 H 0.96705 * 114.00591 * 179.97438 * 12 11 10 37 37 H 1.09001 * 113.76515 * 23.56069 * 13 9 8 38 38 H 1.08994 * 113.76732 * 154.96326 * 13 9 8 39 39 H 1.08999 * 109.46725 * 299.99434 * 17 15 14 40 40 H 1.08999 * 109.47222 * 59.99844 * 17 15 14 41 41 H 0.97001 * 119.99892 * 179.97438 * 22 21 19 42 42 H 1.09000 * 113.76860 * 270.33921 * 27 14 13 43 43 H 1.08995 * 113.87482 * 138.94851 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2293 2.1295 6 6 2.0324 -0.7105 -1.2304 7 8 2.7297 -1.6965 -1.1191 8 7 1.7022 -0.2533 -2.4545 9 6 2.2718 -0.8814 -3.6492 10 6 3.8018 -0.8791 -3.6525 11 6 4.3099 0.5565 -3.5058 12 8 5.7347 0.5486 -3.3964 13 6 1.6484 -0.3861 -4.9669 14 7 0.6881 -1.5004 -4.8108 15 6 -0.5650 -1.7357 -5.2475 16 8 -1.1253 -2.7705 -4.9537 17 6 -1.2700 -0.7131 -6.1010 18 16 -2.9233 -1.3166 -6.5238 19 6 -3.5036 0.0351 -7.4937 20 1 -2.8681 0.8923 -7.6601 21 6 -4.7770 -0.0023 -8.0446 22 7 -5.2104 1.0073 -8.7695 23 14 -5.8759 -1.4854 -7.7572 24 1 -6.6831 -1.2728 -6.5290 25 1 -6.7817 -1.6631 -8.9205 26 1 -5.0362 -2.6992 -7.5937 27 6 1.6532 -2.2509 -3.9841 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.0875 0.4916 -2.5445 32 1 4.1677 -1.4809 -2.8206 33 1 4.1637 -1.2985 -4.5912 34 1 4.0158 1.1372 -4.3801 35 1 3.8792 1.0047 -2.6103 36 1 6.1268 1.4274 -3.3007 37 1 1.1935 0.6017 -4.8936 38 1 2.3056 -0.4903 -5.8302 39 1 -1.3547 0.2236 -5.5501 40 1 -0.6995 -0.5471 -7.0148 41 1 -6.1002 0.9810 -9.1548 42 1 2.3119 -2.9015 -4.5593 43 1 1.2039 -2.7515 -3.1264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487047128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -54.754648 kcal Electronic energy + Delta-G solvation = -27273.570786 eV Core-core repulsion = 23253.894958 eV Total energy + Delta-G solvation = -4019.675827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51513 -39.72074 -38.08469 -37.08167 -36.83164 -34.57720 -33.54197 -32.50697 -31.60511 -30.16068 -27.41513 -26.64278 -25.82814 -25.64655 -23.46561 -22.50382 -20.05394 -19.37910 -18.57193 -17.99292 -17.77002 -17.57283 -16.85487 -16.09136 -16.01908 -15.76173 -15.40600 -15.26330 -14.99832 -14.66590 -14.40844 -14.23116 -13.94569 -13.72307 -13.49723 -13.12617 -13.10248 -12.90317 -12.86594 -12.77969 -12.49773 -12.29184 -12.18200 -12.00096 -11.96722 -11.83091 -11.32537 -11.11715 -11.06452 -10.69196 -10.47795 -10.18632 -9.93117 -9.78952 -9.50163 -9.06897 -8.80947 -8.57535 -7.00097 -6.35593 -4.08121 1.97190 1.99889 2.41169 2.43638 2.75545 2.84264 3.01159 3.27960 3.33800 3.45764 3.49733 3.52756 3.86324 4.08087 4.22785 4.28487 4.30605 4.43371 4.59383 4.66594 4.74229 4.86654 4.95589 4.97323 5.02439 5.03747 5.06832 5.13858 5.14881 5.28415 5.47221 5.50883 5.55655 5.65147 5.76746 5.80730 5.89564 6.00359 6.83737 7.17244 7.21579 7.57084 7.60728 7.87311 8.31372 8.34042 9.10646 10.73502 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002709 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.270239 B =10333.856613 C =11360.606731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 H 0.142 0.858 4 C 0.220 3.780 5 N -0.409 5.409 6 C 0.528 3.472 7 O -0.514 6.514 8 N -0.702 5.702 9 C 0.145 3.855 10 C -0.122 4.122 11 C 0.081 3.919 12 O -0.573 6.573 13 C 0.105 3.895 14 N -0.649 5.649 15 C 0.555 3.445 16 O -0.512 6.512 17 C -0.116 4.116 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.112 3.888 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.380 0.620 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.094 0.906 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.619 5.458 12.570 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 H 0.159 0.841 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.311 3.689 7 O -0.388 6.388 8 N -0.355 5.355 9 C 0.057 3.943 10 C -0.161 4.161 11 C 0.003 3.997 12 O -0.379 6.379 13 C -0.019 4.019 14 N -0.389 5.389 15 C 0.344 3.656 16 O -0.386 6.386 17 C -0.267 4.267 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.011 4.011 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.245 0.755 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.227 0.773 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.387 1.785 14.247 23.329 hybrid contribution -0.431 2.049 -0.884 2.273 sum 17.955 3.833 13.362 22.708 Atomic orbital electron populations 1.21850 0.89121 1.04840 1.04774 1.18837 0.99091 1.00072 0.85412 0.84069 1.28025 0.93872 0.94044 0.94020 1.81213 1.07648 1.07571 1.11944 1.19986 0.80428 0.84546 0.83896 1.90797 1.36997 1.24716 1.86334 1.45503 1.48781 1.37116 1.04092 1.21782 0.92517 0.94990 0.85024 1.21728 0.91589 0.97419 1.05402 1.22069 0.81086 0.96965 0.99610 1.86491 1.20242 1.34326 1.96804 1.23605 0.89664 0.92824 0.95779 1.50045 1.12656 1.21865 1.54294 1.20010 0.79176 0.87499 0.78897 1.90734 1.64453 1.27217 1.56158 1.23218 1.01597 1.00440 1.01397 1.84873 1.09581 1.29650 1.67380 1.22282 1.04139 1.04146 1.36354 0.89385 1.24704 0.96886 0.96244 0.93407 1.69930 1.18935 1.30417 1.32298 0.86748 0.81925 0.84478 0.78794 1.19173 1.19892 1.15921 1.23423 0.88814 0.94318 0.94581 0.90713 0.89977 0.89615 0.75458 0.88458 0.89411 0.93381 0.93814 0.77333 0.88977 0.87732 0.88684 0.88564 0.91879 0.88788 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.04 37.16 0.34 -0.25 16 2 C -0.01 -0.05 3.11 -94.56 -0.29 -0.34 16 3 H 0.14 0.13 8.14 -51.93 -0.42 -0.29 16 4 C 0.22 2.05 13.88 -20.76 -0.29 1.76 16 5 N -0.41 -5.16 18.54 42.15 0.78 -4.38 16 6 C 0.53 3.92 6.74 -10.98 -0.07 3.84 16 7 O -0.51 -6.06 14.20 5.56 0.08 -5.98 16 8 N -0.70 -3.85 4.45 -49.06 -0.22 -4.07 16 9 C 0.14 0.98 0.62 -134.02 -0.08 0.90 16 10 C -0.12 -0.85 4.72 -26.73 -0.13 -0.97 16 11 C 0.08 0.44 6.86 37.16 0.25 0.70 16 12 O -0.57 -4.06 13.66 -35.23 -0.48 -4.54 16 13 C 0.10 0.70 7.77 -2.77 -0.02 0.67 16 14 N -0.65 -7.49 3.62 -177.84 -0.64 -8.13 16 15 C 0.55 9.30 8.08 -10.99 -0.09 9.21 16 16 O -0.51 -10.88 16.59 5.55 0.09 -10.78 16 17 C -0.12 -2.07 5.91 36.00 0.21 -1.86 16 18 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 19 C -0.52 -14.38 10.04 30.94 0.31 -14.07 16 20 H 0.09 2.52 8.03 -52.49 -0.42 2.09 16 21 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 22 N -0.88 -25.71 13.97 55.49 0.78 -24.94 16 23 Si 0.86 21.17 27.74 -169.99 -4.72 16.46 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 27 C 0.11 1.14 7.93 -2.96 -0.02 1.11 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.20 7.45 -51.93 -0.39 -0.18 16 31 H 0.41 1.18 7.90 -40.82 -0.32 0.86 16 32 H 0.10 0.95 6.53 -51.93 -0.34 0.61 16 33 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.05 0.19 8.09 -51.93 -0.42 -0.23 16 35 H 0.04 0.20 7.47 -51.93 -0.39 -0.18 16 36 H 0.38 1.00 9.12 45.56 0.42 1.41 16 37 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 38 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 40 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -39.97 386.58 -5.71 -45.69 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.23 Total: -3.08 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 0.02 Total: 3.35 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.70 Total: -41.52 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.31 Total: -21.30 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.72 Total: 16.46 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.97 -5.71 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487047128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.068 kcal (2) G-P(sol) polarization free energy of solvation -39.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds