Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47329 * 2 1 4 4 C 1.47196 * 109.47168 * 119.99972 * 2 1 3 5 5 N 2.60800 * 109.46930 * 119.99751 * 2 1 3 6 6 C 1.50705 * 109.47466 * 239.99676 * 2 1 3 7 7 O 1.21277 * 120.00141 * 239.99993 * 6 2 1 8 8 N 1.34777 * 119.99423 * 59.72363 * 6 2 1 9 9 C 1.46499 * 119.99597 * 175.37311 * 8 6 2 10 10 C 1.52999 * 112.94772 * 303.26645 * 9 8 6 11 11 C 1.52996 * 109.47041 * 303.67221 * 10 9 8 12 12 O 1.42895 * 109.47180 * 175.19257 * 11 10 9 13 13 C 1.53954 * 113.74201 * 171.67417 * 9 8 6 14 14 N 1.47927 * 85.99602 * 269.20623 * 13 9 8 15 15 C 1.34779 * 134.49841 * 155.33370 * 14 13 9 16 16 O 1.21283 * 119.99851 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00158 * 0.03266 * 15 14 13 18 18 S 1.81004 * 109.47167 * 179.97438 * 17 15 14 19 19 C 1.76200 * 100.00020 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99613 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99859 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99659 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00146 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47100 * 89.99522 * 23 21 19 25 25 H 1.48501 * 109.46953 * 209.99869 * 23 21 19 26 26 H 1.48498 * 109.46970 * 329.99736 * 23 21 19 27 27 C 1.47581 * 91.01029 * 335.35933 * 14 13 9 28 28 H 1.09001 * 109.46635 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47312 * 299.99976 * 1 2 3 30 30 H 1.08999 * 109.46904 * 60.00118 * 1 2 3 31 31 H 0.97001 * 120.00478 * 355.37016 * 8 6 2 32 32 H 1.09002 * 109.46765 * 63.66899 * 10 9 8 33 33 H 1.08994 * 109.47161 * 183.67256 * 10 9 8 34 34 H 1.09003 * 109.47505 * 295.19580 * 11 10 9 35 35 H 1.09005 * 109.47342 * 55.19264 * 11 10 9 36 36 H 0.96705 * 114.00591 * 179.97438 * 12 11 10 37 37 H 1.09001 * 113.76515 * 23.56069 * 13 9 8 38 38 H 1.08994 * 113.76732 * 154.96326 * 13 9 8 39 39 H 1.08999 * 109.46725 * 299.99434 * 17 15 14 40 40 H 1.08999 * 109.47222 * 59.99844 * 17 15 14 41 41 H 0.97001 * 119.99892 * 179.97438 * 22 21 19 42 42 H 1.09000 * 113.76860 * 270.33921 * 27 14 13 43 43 H 1.08995 * 113.87482 * 138.94851 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2293 2.1295 6 6 2.0324 -0.7105 -1.2304 7 8 2.7297 -1.6965 -1.1191 8 7 1.7022 -0.2533 -2.4545 9 6 2.2718 -0.8814 -3.6492 10 6 3.8018 -0.8791 -3.6525 11 6 4.3099 0.5565 -3.5058 12 8 5.7347 0.5486 -3.3964 13 6 1.6484 -0.3861 -4.9669 14 7 0.6881 -1.5004 -4.8108 15 6 -0.5650 -1.7357 -5.2475 16 8 -1.1253 -2.7705 -4.9537 17 6 -1.2700 -0.7131 -6.1010 18 16 -2.9233 -1.3166 -6.5238 19 6 -3.5036 0.0351 -7.4937 20 1 -2.8681 0.8923 -7.6601 21 6 -4.7770 -0.0023 -8.0446 22 7 -5.2104 1.0073 -8.7695 23 14 -5.8759 -1.4854 -7.7572 24 1 -6.6831 -1.2728 -6.5290 25 1 -6.7817 -1.6631 -8.9205 26 1 -5.0362 -2.6992 -7.5937 27 6 1.6532 -2.2509 -3.9841 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.0875 0.4916 -2.5445 32 1 4.1677 -1.4809 -2.8206 33 1 4.1637 -1.2985 -4.5912 34 1 4.0158 1.1372 -4.3801 35 1 3.8792 1.0047 -2.6103 36 1 6.1268 1.4274 -3.3007 37 1 1.1935 0.6017 -4.8936 38 1 2.3056 -0.4903 -5.8302 39 1 -1.3547 0.2236 -5.5501 40 1 -0.6995 -0.5471 -7.0148 41 1 -6.1002 0.9810 -9.1548 42 1 2.3119 -2.9015 -4.5593 43 1 1.2039 -2.7515 -3.1264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487047128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -88.347906 kcal Electronic energy + Delta-G solvation = -27275.027499 eV Core-core repulsion = 23253.894958 eV Total energy + Delta-G solvation = -4021.132540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22868 -40.57827 -39.14253 -37.63444 -37.59287 -35.25560 -34.64155 -34.18909 -32.25662 -31.34691 -28.35993 -27.77892 -27.34646 -26.25422 -24.10109 -23.10112 -20.88663 -20.36703 -19.60302 -19.16817 -18.41658 -18.15230 -17.94629 -17.15350 -16.91236 -16.81621 -16.65210 -16.16948 -15.98204 -15.63605 -15.28709 -15.21773 -14.90128 -14.80024 -14.59833 -14.15019 -14.09134 -13.78270 -13.57377 -13.51872 -13.34217 -13.31827 -13.08625 -13.00167 -12.80805 -12.79320 -12.61681 -12.44683 -12.32857 -11.85666 -11.69460 -11.14634 -11.08039 -10.89537 -10.69250 -10.48381 -10.30453 -9.77259 -8.97118 -8.48995 -6.19009 0.97601 1.32427 1.34664 1.41146 1.44245 1.52084 1.57555 1.70489 1.94606 2.16169 2.26504 2.70385 2.77327 2.89877 2.95965 3.31208 3.45704 3.59699 3.89875 3.94194 4.14718 4.16947 4.28871 4.30875 4.38372 4.42311 4.49001 4.53778 4.60472 4.66745 4.72007 4.77967 4.82142 4.83731 5.05374 5.25186 5.26368 5.42536 5.74078 6.15161 6.33528 6.50718 6.53659 6.97330 7.00499 7.07410 7.09859 8.62934 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002709 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.270239 B =10333.856613 C =11360.606731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.001 4.001 3 H 0.195 0.805 4 C 0.241 3.759 5 N -0.477 5.477 6 C 0.527 3.473 7 O -0.564 6.564 8 N -0.688 5.688 9 C 0.162 3.838 10 C -0.117 4.117 11 C 0.080 3.920 12 O -0.600 6.600 13 C 0.109 3.891 14 N -0.642 5.642 15 C 0.556 3.444 16 O -0.570 6.570 17 C -0.097 4.097 18 S -0.186 6.186 19 C -0.521 4.521 20 H 0.068 0.932 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.909 3.091 24 H -0.262 1.262 25 H -0.263 1.263 26 H -0.240 1.240 27 C 0.101 3.899 28 H 0.047 0.953 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.426 0.574 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.398 0.602 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.276 0.724 42 H 0.103 0.897 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.565 7.680 12.317 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 H 0.212 0.788 4 C -0.078 4.078 5 N -0.152 5.152 6 C 0.312 3.688 7 O -0.441 6.441 8 N -0.342 5.342 9 C 0.073 3.927 10 C -0.156 4.156 11 C 0.002 3.998 12 O -0.409 6.409 13 C -0.012 4.012 14 N -0.378 5.378 15 C 0.345 3.655 16 O -0.449 6.449 17 C -0.248 4.248 18 S 0.041 5.959 19 C -0.668 4.668 20 H 0.087 0.913 21 C -0.157 4.157 22 N -0.554 5.554 23 Si 0.731 3.269 24 H -0.187 1.187 25 H -0.187 1.187 26 H -0.164 1.164 27 C -0.023 4.023 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.266 0.734 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.248 0.752 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.370 4.088 13.991 24.242 hybrid contribution -0.521 1.401 -0.772 1.682 sum 18.849 5.489 13.219 23.668 Atomic orbital electron populations 1.21905 0.88001 1.03734 1.06781 1.19169 0.99607 1.01624 0.82099 0.78794 1.28885 0.92165 0.92666 0.94039 1.81220 1.09949 1.09703 1.14379 1.20398 0.79537 0.83891 0.84941 1.90802 1.39332 1.26951 1.87040 1.45402 1.48547 1.37106 1.03171 1.21522 0.92633 0.92734 0.85774 1.21634 0.91099 0.98489 1.04418 1.22139 0.80537 0.95788 1.01300 1.86439 1.21209 1.36310 1.96951 1.24041 0.88342 0.92693 0.96151 1.49987 1.11546 1.23663 1.52641 1.19734 0.80627 0.86377 0.78725 1.90715 1.66388 1.29222 1.58533 1.23158 0.97361 1.01469 1.02788 1.84918 1.14807 1.29242 1.66947 1.22415 1.03892 1.04362 1.36176 0.91347 1.25472 0.98327 0.98494 0.93450 1.70000 1.19713 1.32089 1.33559 0.85947 0.80372 0.81450 0.79110 1.18713 1.18704 1.16403 1.23646 0.88502 0.96383 0.93723 0.93388 0.88437 0.87171 0.73384 0.91609 0.88846 0.90773 0.92765 0.75247 0.85678 0.85169 0.86018 0.86943 0.91449 0.87893 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.04 71.98 0.65 -0.11 16 2 C 0.00 -0.01 3.11 -13.34 -0.04 -0.05 16 3 H 0.20 -0.64 8.14 -2.38 -0.02 -0.66 16 4 C 0.24 4.33 13.88 89.44 1.24 5.57 16 5 N -0.48 -12.33 18.54 20.01 0.37 -11.96 16 6 C 0.53 6.83 6.74 87.66 0.59 7.42 16 7 O -0.56 -13.27 14.20 -3.02 -0.04 -13.31 16 8 N -0.69 -5.30 4.45 -427.52 -1.90 -7.21 16 9 C 0.16 1.73 0.62 5.36 0.00 1.73 16 10 C -0.12 -1.34 4.72 30.59 0.14 -1.20 16 11 C 0.08 0.58 6.86 71.98 0.49 1.08 16 12 O -0.60 -6.97 13.66 -148.98 -2.03 -9.00 16 13 C 0.11 0.93 7.77 86.42 0.67 1.61 16 14 N -0.64 -13.14 3.62 -834.94 -3.02 -16.16 16 15 C 0.56 17.70 8.08 87.66 0.71 18.41 16 16 O -0.57 -24.23 16.59 -3.04 -0.05 -24.28 16 17 C -0.10 -3.23 5.91 71.24 0.42 -2.81 16 18 S -0.19 -8.88 18.55 -56.49 -1.05 -9.93 16 19 C -0.52 -28.51 10.04 67.95 0.68 -27.83 16 20 H 0.07 3.89 8.03 -2.91 -0.02 3.87 16 21 C 0.05 2.71 5.50 84.86 0.47 3.17 16 22 N -0.92 -53.54 13.97 21.65 0.30 -53.24 16 23 Si 0.91 43.61 27.74 68.60 1.90 45.51 16 24 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 27 C 0.10 1.93 7.93 86.49 0.69 2.61 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.11 0.06 7.45 -2.39 -0.02 0.05 16 31 H 0.43 0.38 7.90 -92.71 -0.73 -0.35 16 32 H 0.07 1.24 6.53 -2.39 -0.02 1.23 16 33 H 0.09 0.95 8.11 -2.39 -0.02 0.93 16 34 H 0.07 0.18 8.09 -2.39 -0.02 0.16 16 35 H 0.05 0.28 7.47 -2.38 -0.02 0.26 16 36 H 0.40 1.01 9.12 -74.05 -0.68 0.33 16 37 H 0.13 0.38 8.09 -2.39 -0.02 0.36 16 38 H 0.13 0.64 8.07 -2.39 -0.02 0.62 16 39 H 0.12 3.41 8.14 -2.40 -0.02 3.39 16 40 H 0.11 3.41 8.14 -2.40 -0.02 3.39 16 41 H 0.28 15.01 8.31 -92.71 -0.77 14.23 16 42 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -92.68 386.58 0.81 -91.87 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: -0.38 Total: -1.91 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.72 Total: 9.61 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -4.25 Total: -88.57 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -2.13 Total: -46.59 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.90 Total: 45.51 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -92.68 0.81 -91.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487047128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.518 kcal (2) G-P(sol) polarization free energy of solvation -92.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds