Wall clock time and date at job start Sat Apr 11 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35539 * 125.67660 * 2 1 4 4 C 1.35452 * 108.86808 * 180.02562 * 3 2 1 5 5 C 1.39829 * 107.86872 * 0.02562 * 4 3 2 6 6 C 1.37653 * 125.67732 * 180.02562 * 2 1 3 7 7 C 1.46673 * 126.23296 * 359.97438 * 6 2 1 8 8 O 1.21690 * 120.00030 * 354.26875 * 7 6 2 9 9 N 1.34784 * 119.99760 * 174.26920 * 7 6 2 10 10 C 1.46501 * 119.99791 * 185.12476 * 9 7 6 11 11 C 1.52998 * 109.46968 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47457 * 294.99895 * 11 10 9 13 13 C 1.53005 * 109.47123 * 174.99595 * 11 10 9 14 14 O 1.42900 * 109.47130 * 305.00497 * 13 11 10 15 15 N 1.46500 * 109.47219 * 54.99989 * 11 10 9 16 16 C 1.34777 * 120.00031 * 205.00057 * 15 11 10 17 17 O 1.21274 * 119.99943 * 359.97438 * 16 15 11 18 18 C 1.50704 * 119.99682 * 179.97438 * 16 15 11 19 19 S 1.81002 * 109.46780 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99918 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99524 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99737 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99731 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00203 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46977 * 90.00090 * 24 22 20 26 26 H 1.48500 * 109.46921 * 210.00079 * 24 22 20 27 27 H 1.48500 * 109.46908 * 330.00079 * 24 22 20 28 28 H 1.08998 * 109.46691 * 273.88577 * 1 2 3 29 29 H 1.08995 * 109.47225 * 33.88759 * 1 2 3 30 30 H 1.08999 * 109.47176 * 153.89276 * 1 2 3 31 31 H 1.07993 * 125.56591 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.06295 * 180.02562 * 4 3 2 33 33 H 1.08008 * 126.46097 * 180.25994 * 5 4 3 34 34 H 0.96996 * 119.99829 * 5.11711 * 9 7 6 35 35 H 1.08998 * 109.46799 * 299.99856 * 10 9 7 36 36 H 1.09001 * 109.47380 * 59.99526 * 10 9 7 37 37 H 1.09001 * 109.46787 * 65.00092 * 13 11 10 38 38 H 1.08992 * 109.47353 * 184.99844 * 13 11 10 39 39 H 0.96702 * 113.99736 * 179.97438 * 14 13 11 40 40 H 0.97001 * 119.99759 * 25.00054 * 15 11 10 41 41 H 1.08993 * 109.46993 * 299.99408 * 18 16 15 42 42 H 1.08997 * 109.47536 * 59.99777 * 18 16 15 43 43 H 0.96994 * 119.99503 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 -0.0006 5 6 3.5780 -0.6887 -0.0015 6 6 2.2678 -1.1182 -0.0005 7 6 1.8124 -2.5124 -0.0006 8 8 0.6267 -2.7652 0.1050 9 7 2.7072 -3.5136 -0.1177 10 6 2.2452 -4.8993 -0.2308 11 6 3.4527 -5.8311 -0.3512 12 1 3.9788 -5.6256 -1.2833 13 6 2.9774 -7.2854 -0.3438 14 8 2.1885 -7.5228 0.8239 15 7 4.3570 -5.6073 0.7795 16 6 5.6673 -5.9007 0.6628 17 8 6.0976 -6.3505 -0.3780 18 6 6.5975 -5.6698 1.8258 19 16 8.2773 -6.1581 1.3608 20 6 9.1282 -5.7925 2.8598 21 1 8.5871 -5.3905 3.7035 22 6 10.4938 -6.0212 2.9561 23 7 11.1294 -5.7486 4.0761 24 14 11.4297 -6.7160 1.4963 25 1 11.9277 -5.6008 0.6514 26 1 12.5795 -7.5200 1.9828 27 1 10.5260 -7.5793 0.6943 28 1 -0.3632 0.0696 1.0253 29 1 -0.3633 0.8531 -0.5730 30 1 -0.3633 -0.9228 -0.4522 31 1 1.9082 2.1236 -0.0004 32 1 4.4132 1.3612 -0.0003 33 1 4.4584 -1.3144 0.0018 34 1 3.6569 -3.3166 -0.1271 35 1 1.6688 -5.1635 0.6558 36 1 1.6177 -5.0020 -1.1161 37 1 2.3764 -7.4757 -1.2330 38 1 3.8412 -7.9500 -0.3400 39 1 1.8524 -8.4267 0.8944 40 1 4.0127 -5.2478 1.6121 41 1 6.5872 -4.6138 2.0952 42 1 6.2691 -6.2653 2.6776 43 1 12.0836 -5.9088 4.1435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487943561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:22 Heat of formation + Delta-G solvation = -101.098204 kcal Electronic energy + Delta-G solvation = -26770.567280 eV Core-core repulsion = 22748.881845 eV Total energy + Delta-G solvation = -4021.685435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33414 -41.07186 -40.03361 -38.25970 -36.44737 -34.90271 -34.65213 -33.68312 -32.23686 -30.57984 -29.55677 -27.83058 -27.37544 -26.81246 -23.54903 -22.82481 -21.59783 -21.44032 -20.63270 -19.90594 -18.96504 -18.58956 -17.73300 -17.63722 -17.11160 -17.04919 -16.73885 -16.50556 -16.20804 -15.88048 -15.58076 -15.28449 -15.06732 -14.89474 -14.63461 -14.53718 -14.36615 -14.13672 -13.80916 -13.70232 -13.32339 -13.28388 -13.19221 -13.04314 -12.93880 -12.89758 -12.59897 -12.37614 -11.85452 -11.19596 -11.15444 -11.12093 -10.85120 -10.52128 -10.27644 -10.20364 -9.69990 -9.19501 -8.96845 -8.49903 -6.20278 0.43465 1.00003 1.33196 1.47583 1.53897 1.55945 1.64449 1.80226 2.15615 2.26438 2.32778 2.38084 2.72602 2.88473 3.31711 3.54793 3.72190 3.85738 3.97885 4.01530 4.18305 4.24804 4.29224 4.37942 4.46104 4.47446 4.50018 4.53767 4.59346 4.68029 4.72760 4.91042 5.14846 5.25217 5.26638 5.38604 5.72285 5.77732 5.99430 6.13530 6.29905 6.38255 6.40882 6.86749 6.95179 7.06112 7.14426 8.62689 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.002737 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.526571 B =10229.466940 C =12169.540541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.420 5.420 3 C 0.025 3.975 4 C -0.225 4.225 5 C -0.143 4.143 6 C -0.089 4.089 7 C 0.590 3.410 8 O -0.580 6.580 9 N -0.711 5.711 10 C 0.130 3.870 11 C 0.141 3.859 12 H 0.106 0.894 13 C 0.070 3.930 14 O -0.581 6.581 15 N -0.705 5.705 16 C 0.543 3.457 17 O -0.554 6.554 18 C -0.114 4.114 19 S -0.167 6.167 20 C -0.529 4.529 21 H 0.060 0.940 22 C 0.044 3.956 23 N -0.919 5.919 24 Si 0.916 3.084 25 H -0.261 1.261 26 H -0.262 1.262 27 H -0.235 1.235 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.204 0.796 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.410 0.590 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.398 0.602 40 H 0.413 0.587 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.262 8.899 -10.913 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.093 5.093 3 C -0.111 4.111 4 C -0.249 4.249 5 C -0.170 4.170 6 C -0.201 4.201 7 C 0.379 3.621 8 O -0.462 6.462 9 N -0.363 5.363 10 C 0.006 3.994 11 C 0.036 3.964 12 H 0.124 0.876 13 C -0.009 4.009 14 O -0.389 6.389 15 N -0.359 5.359 16 C 0.328 3.672 17 O -0.431 6.431 18 C -0.265 4.265 19 S 0.060 5.940 20 C -0.677 4.677 21 H 0.078 0.922 22 C -0.162 4.162 23 N -0.557 5.557 24 Si 0.738 3.262 25 H -0.186 1.186 26 H -0.186 1.186 27 H -0.158 1.158 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.221 0.779 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.249 0.751 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.523 8.534 -12.371 28.762 hybrid contribution 0.581 -0.099 1.579 1.685 sum -23.942 8.434 -10.792 27.583 Atomic orbital electron populations 1.22376 0.75107 1.05719 1.04441 1.44111 1.07624 1.04924 1.52593 1.22661 0.90350 0.92575 1.05477 1.21198 0.97288 0.94882 1.11511 1.21671 0.94461 0.96611 1.04224 1.20047 0.91239 0.87659 1.21200 1.17122 0.85168 0.84174 0.75631 1.90753 1.17465 1.85378 1.52623 1.45583 1.10296 1.06116 1.74265 1.21510 0.95324 0.78375 1.04146 1.21403 0.89534 0.94313 0.91160 0.87597 1.22451 0.94695 0.94648 0.89118 1.86407 1.71115 1.36999 1.44411 1.45773 1.06251 1.66397 1.17493 1.19839 0.82748 0.76630 0.87934 1.90696 1.76826 1.45051 1.30558 1.23278 0.96013 1.06706 1.00519 1.84611 1.02631 1.85619 1.21171 1.22481 0.96845 1.49285 0.99093 0.92186 1.25599 0.97572 0.94365 0.98619 1.70026 1.10614 1.47669 1.27384 0.85845 0.79983 0.80453 0.79946 1.18573 1.18599 1.15834 0.90145 0.86990 0.89762 0.77893 0.82400 0.83194 0.75296 0.90100 0.89045 0.89857 0.93967 0.75215 0.75051 0.86809 0.87412 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 10.63 127.77 1.36 2.22 16 2 N -0.42 -7.64 3.16 -534.33 -1.69 -9.33 16 3 C 0.03 0.37 11.38 83.48 0.95 1.32 16 4 C -0.23 -3.87 10.81 22.01 0.24 -3.63 16 5 C -0.14 -2.85 10.35 22.57 0.23 -2.62 16 6 C -0.09 -1.94 6.88 40.35 0.28 -1.66 16 7 C 0.59 13.75 7.77 86.44 0.67 14.42 16 8 O -0.58 -16.22 14.67 -4.32 -0.06 -16.28 16 9 N -0.71 -13.40 5.37 -467.08 -2.51 -15.91 16 10 C 0.13 2.25 5.12 86.38 0.44 2.70 16 11 C 0.14 2.59 2.53 44.99 0.11 2.71 16 12 H 0.11 2.08 7.58 -2.39 -0.02 2.06 16 13 C 0.07 1.17 6.85 71.98 0.49 1.66 16 14 O -0.58 -9.36 12.64 -148.98 -1.88 -11.24 16 15 N -0.71 -15.41 4.46 -442.54 -1.98 -17.39 16 16 C 0.54 16.94 7.81 87.66 0.68 17.63 16 17 O -0.55 -21.11 15.52 -3.01 -0.05 -21.15 16 18 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 19 S -0.17 -8.14 18.55 -56.49 -1.05 -9.19 16 20 C -0.53 -30.43 10.04 67.95 0.68 -29.75 16 21 H 0.06 3.66 8.03 -2.91 -0.02 3.64 16 22 C 0.04 2.54 5.50 84.86 0.47 3.01 16 23 N -0.92 -55.79 13.97 21.65 0.30 -55.49 16 24 Si 0.92 44.35 27.74 68.60 1.90 46.25 16 25 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 27 H -0.23 -11.24 6.74 99.48 0.67 -10.57 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.50 6.23 -2.39 -0.01 1.48 16 31 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.15 2.65 7.45 -2.91 -0.02 2.63 16 34 H 0.41 7.13 7.04 -92.71 -0.65 6.48 16 35 H 0.08 1.61 7.39 -2.39 -0.02 1.59 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.40 3.32 9.12 -74.06 -0.68 2.64 16 40 H 0.41 7.88 8.60 -92.71 -0.80 7.08 16 41 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 42 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 43 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -79.62 381.74 -1.05 -80.67 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -1.09 Total: 24.74 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 7.05 Total: 4.32 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -5.87 Total: -98.12 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -1.99 Total: -48.67 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.05 Total: -9.19 kcal Total: -79.62 -1.05 -80.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487943561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.427 kcal (2) G-P(sol) polarization free energy of solvation -79.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds