Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09011 * 109.47068 * 2 1 4 4 N 1.46500 * 109.47393 * 240.00027 * 2 1 3 5 5 C 1.34783 * 119.99838 * 84.99941 * 4 2 1 6 6 O 1.21277 * 120.00207 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99957 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47373 * 179.97438 * 7 5 4 9 9 C 1.76200 * 99.99932 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00333 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99622 * 180.02562 * 9 8 7 12 12 N 1.31626 * 120.00196 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00079 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47280 * 89.99365 * 13 11 9 15 15 H 1.48493 * 109.47405 * 209.99671 * 13 11 9 16 16 H 1.48507 * 109.46799 * 329.99986 * 13 11 9 17 17 C 1.52999 * 109.47400 * 119.99645 * 2 1 3 18 18 H 1.08996 * 109.47469 * 185.00063 * 17 2 1 19 19 C 1.53003 * 109.46917 * 65.00644 * 17 2 1 20 20 N 1.46497 * 109.47017 * 305.00717 * 17 2 1 21 21 C 1.34780 * 119.99566 * 205.00005 * 20 17 2 22 22 O 1.21280 * 120.00423 * 359.97438 * 21 20 17 23 23 C 1.50701 * 119.99795 * 180.02562 * 21 20 17 24 24 C 1.50703 * 109.47064 * 179.97438 * 23 21 20 25 25 C 1.41384 * 128.00526 * 269.67801 * 24 23 21 26 26 N 1.30178 * 106.39347 * 179.89665 * 25 24 23 27 27 O 1.20917 * 111.60526 * 0.38840 * 26 25 24 28 28 C 1.34049 * 111.56526 * 359.74749 * 27 26 25 29 29 H 1.09006 * 109.47086 * 60.00373 * 1 2 3 30 30 H 1.09007 * 109.46589 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47437 * 299.99531 * 1 2 3 32 32 H 0.96994 * 120.00520 * 264.99721 * 4 2 1 33 33 H 1.09011 * 109.46987 * 299.99642 * 7 5 4 34 34 H 1.09004 * 109.47619 * 59.99388 * 7 5 4 35 35 H 0.97000 * 120.00106 * 179.97438 * 12 11 9 36 36 H 1.09006 * 109.46570 * 299.99863 * 19 17 2 37 37 H 1.09000 * 109.47614 * 59.99489 * 19 17 2 38 38 H 1.08998 * 109.47302 * 180.02562 * 19 17 2 39 39 H 0.96995 * 120.00423 * 24.99311 * 20 17 2 40 40 H 1.09002 * 109.47060 * 299.99722 * 23 21 20 41 41 H 1.09001 * 109.47380 * 59.99809 * 23 21 20 42 42 H 1.07996 * 126.80303 * 0.03062 * 25 24 23 43 43 H 1.08005 * 126.77364 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7286 -3.5877 8 16 2.7092 0.4342 -4.9735 9 6 3.3126 -0.6310 -6.2407 10 1 3.5220 -1.6674 -6.0207 11 6 3.5189 -0.1380 -7.5217 12 7 3.2632 1.1250 -7.7900 13 14 4.1579 -1.2674 -8.8655 14 1 3.0121 -1.9044 -9.5631 15 1 4.9532 -0.4774 -9.8393 16 1 5.0162 -2.3184 -8.2621 17 6 2.0400 -0.7212 1.2493 18 1 3.1263 -0.6442 1.2952 19 6 1.6354 -2.1954 1.1880 20 7 1.4558 -0.1036 2.4423 21 6 2.0912 -0.1937 3.6275 22 8 3.1464 -0.7863 3.7064 23 6 1.4900 0.4411 4.8550 24 6 2.3900 0.1970 6.0388 25 6 2.3591 -0.8859 6.9472 26 7 3.3204 -0.6777 7.8000 27 8 3.9142 0.3479 7.5598 28 6 3.4120 0.9673 6.4823 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 3.6481 -1.1212 -3.3986 34 1 1.9761 -1.5506 -3.8326 35 1 3.4077 1.4696 -8.6851 36 1 0.5490 -2.2724 1.1421 37 1 2.0699 -2.6550 0.3002 38 1 1.9983 -2.7092 2.0781 39 1 0.6117 0.3702 2.3794 40 1 1.3835 1.5139 4.6941 41 1 0.5103 0.0036 5.0475 42 1 1.6751 -1.7215 6.9347 43 1 3.7549 1.8969 6.0524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508498737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = -12.560363 kcal Electronic energy + Delta-G solvation = -26114.505577 eV Core-core repulsion = 22096.659431 eV Total energy + Delta-G solvation = -4017.846146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.29818 -40.51687 -39.37798 -37.12532 -34.99157 -34.13652 -32.56945 -32.45372 -31.51753 -30.08321 -28.89263 -28.50824 -25.53093 -25.00326 -23.41733 -22.63267 -21.18514 -20.59097 -20.00917 -18.41819 -18.10880 -17.91249 -17.42192 -16.69939 -16.29901 -15.91047 -15.68681 -15.22346 -14.98393 -14.82414 -14.71426 -14.25265 -14.00744 -13.89547 -13.52212 -13.35077 -13.23870 -12.90517 -12.63345 -12.58382 -12.46876 -12.09796 -11.97074 -11.64472 -11.28832 -11.14169 -11.08311 -11.04630 -10.78352 -10.76745 -10.35183 -9.85031 -9.79546 -9.54755 -9.45565 -9.10383 -9.02968 -8.27466 -6.53139 -6.24256 -3.95042 1.11531 1.81120 2.21219 2.62214 2.88054 3.00725 3.09100 3.20759 3.26943 3.31563 3.68264 3.85595 4.17963 4.20347 4.24206 4.29867 4.47932 4.59326 4.68782 4.84181 4.86083 5.04427 5.10875 5.11402 5.13506 5.16437 5.24365 5.35036 5.41558 5.56202 5.59014 5.63210 5.73563 5.84288 5.86850 6.04387 6.09845 6.11997 6.53336 7.04004 7.57081 7.60149 7.80295 7.86976 8.32752 8.52465 9.21302 10.83145 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028947 B = 0.001661 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.063602 B =16848.826705 C =17009.232282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.094 0.906 4 N -0.732 5.732 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.136 3.864 18 H 0.095 0.905 19 C -0.167 4.167 20 N -0.722 5.722 21 C 0.514 3.486 22 O -0.529 6.529 23 C -0.064 4.064 24 C -0.188 4.188 25 C 0.004 3.996 26 N -0.366 5.366 27 O 0.097 5.903 28 C -0.041 4.041 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.402 0.598 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.188 0.812 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 -2.883 27.724 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.031 3.969 18 H 0.113 0.887 19 C -0.226 4.226 20 N -0.377 5.377 21 C 0.299 3.701 22 O -0.404 6.404 23 C -0.104 4.104 24 C -0.193 4.193 25 C -0.175 4.175 26 N -0.069 5.069 27 O 0.033 5.967 28 C -0.123 4.123 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.239 0.761 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.205 0.795 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.371 -1.863 28.625 29.385 hybrid contribution -0.095 -2.107 -1.674 2.693 sum -6.466 -3.970 26.951 27.999 Atomic orbital electron populations 1.22269 0.95205 1.02538 1.02616 1.20966 0.94417 0.97749 0.83689 0.88799 1.46089 1.69633 1.14042 1.09136 1.20331 0.76656 0.87200 0.83687 1.90699 1.48120 1.15720 1.84367 1.23543 1.03757 1.04925 0.98279 1.85381 1.86315 1.12870 0.98703 1.22868 1.51049 0.98166 0.96359 0.90902 1.24989 0.95067 0.95535 0.97958 1.70012 1.45533 1.13207 1.21524 0.86168 0.78839 0.79964 0.80534 1.20266 1.20734 1.19687 1.21113 0.99615 0.92637 0.83541 0.88663 1.22244 1.02232 0.95373 1.02712 1.46066 1.26176 1.57465 1.07959 1.20526 0.84993 0.80266 0.84282 1.90759 1.22258 1.42008 1.85364 1.19887 0.98483 1.03280 0.88746 1.20692 1.01319 0.97030 1.00245 1.24907 0.98807 1.00851 0.92961 1.73874 1.08526 1.01302 1.23237 1.84826 1.47028 1.26304 1.38529 1.25810 0.95534 1.00995 0.89951 0.91004 0.91840 0.92206 0.76552 0.89136 0.89150 0.92165 0.91661 0.91380 0.91722 0.76150 0.87150 0.87198 0.79497 0.76756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.00 37.15 0.33 -1.07 16 2 C 0.14 1.36 2.62 -67.93 -0.18 1.19 16 3 H 0.09 1.12 7.58 -51.92 -0.39 0.73 16 4 N -0.73 -8.80 4.99 -53.81 -0.27 -9.07 16 5 C 0.53 9.33 7.81 -10.98 -0.09 9.24 16 6 O -0.52 -10.96 15.52 5.56 0.09 -10.87 16 7 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 8 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 9 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 10 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 13 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 C 0.14 1.12 2.62 -67.93 -0.18 0.94 16 18 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 19 C -0.17 -1.23 9.00 37.16 0.33 -0.90 16 20 N -0.72 -4.46 4.99 -53.81 -0.27 -4.73 16 21 C 0.51 3.90 7.79 -10.98 -0.09 3.81 16 22 O -0.53 -6.48 15.70 5.56 0.09 -6.40 16 23 C -0.06 -0.26 6.28 -29.03 -0.18 -0.44 16 24 C -0.19 -1.27 4.82 -104.42 -0.50 -1.77 16 25 C 0.00 0.03 12.16 -17.06 -0.21 -0.18 16 26 N -0.37 -3.74 12.07 30.36 0.37 -3.37 16 27 O 0.10 0.88 11.20 17.15 0.19 1.07 16 28 C -0.04 -0.26 12.26 29.73 0.36 0.10 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 31 H 0.06 0.33 6.29 -51.93 -0.33 0.00 16 32 H 0.40 3.81 6.58 -40.82 -0.27 3.55 16 33 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 34 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 0.42 6.57 -51.93 -0.34 0.07 16 37 H 0.07 0.47 6.29 -51.93 -0.33 0.14 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 1.46 6.58 -40.82 -0.27 1.19 16 40 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.22 0.58 8.06 -52.48 -0.42 0.15 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -38.18 379.75 -6.14 -44.31 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.59 Total: 0.70 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 0.03 Total: -4.63 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.56 Total: -42.30 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.37 Total: -16.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.18 -6.14 -44.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508498737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.752 kcal (2) G-P(sol) polarization free energy of solvation -38.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds