Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09011 * 109.47068 * 2 1 4 4 N 1.46500 * 109.47393 * 240.00027 * 2 1 3 5 5 C 1.34783 * 119.99838 * 84.99941 * 4 2 1 6 6 O 1.21277 * 120.00207 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99957 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47373 * 179.97438 * 7 5 4 9 9 C 1.76200 * 99.99932 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00333 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99622 * 180.02562 * 9 8 7 12 12 N 1.31626 * 120.00196 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00079 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47280 * 89.99365 * 13 11 9 15 15 H 1.48493 * 109.47405 * 209.99671 * 13 11 9 16 16 H 1.48507 * 109.46799 * 329.99986 * 13 11 9 17 17 C 1.52999 * 109.47400 * 119.99645 * 2 1 3 18 18 H 1.08996 * 109.47469 * 185.00063 * 17 2 1 19 19 C 1.53003 * 109.46917 * 65.00644 * 17 2 1 20 20 N 1.46497 * 109.47017 * 305.00717 * 17 2 1 21 21 C 1.34780 * 119.99566 * 205.00005 * 20 17 2 22 22 O 1.21280 * 120.00423 * 359.97438 * 21 20 17 23 23 C 1.50701 * 119.99795 * 180.02562 * 21 20 17 24 24 C 1.50703 * 109.47064 * 179.97438 * 23 21 20 25 25 C 1.41384 * 128.00526 * 269.67801 * 24 23 21 26 26 N 1.30178 * 106.39347 * 179.89665 * 25 24 23 27 27 O 1.20917 * 111.60526 * 0.38840 * 26 25 24 28 28 C 1.34049 * 111.56526 * 359.74749 * 27 26 25 29 29 H 1.09006 * 109.47086 * 60.00373 * 1 2 3 30 30 H 1.09007 * 109.46589 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47437 * 299.99531 * 1 2 3 32 32 H 0.96994 * 120.00520 * 264.99721 * 4 2 1 33 33 H 1.09011 * 109.46987 * 299.99642 * 7 5 4 34 34 H 1.09004 * 109.47619 * 59.99388 * 7 5 4 35 35 H 0.97000 * 120.00106 * 179.97438 * 12 11 9 36 36 H 1.09006 * 109.46570 * 299.99863 * 19 17 2 37 37 H 1.09000 * 109.47614 * 59.99489 * 19 17 2 38 38 H 1.08998 * 109.47302 * 180.02562 * 19 17 2 39 39 H 0.96995 * 120.00423 * 24.99311 * 20 17 2 40 40 H 1.09002 * 109.47060 * 299.99722 * 23 21 20 41 41 H 1.09001 * 109.47380 * 59.99809 * 23 21 20 42 42 H 1.07996 * 126.80303 * 0.03062 * 25 24 23 43 43 H 1.08005 * 126.77364 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7286 -3.5877 8 16 2.7092 0.4342 -4.9735 9 6 3.3126 -0.6310 -6.2407 10 1 3.5220 -1.6674 -6.0207 11 6 3.5189 -0.1380 -7.5217 12 7 3.2632 1.1250 -7.7900 13 14 4.1579 -1.2674 -8.8655 14 1 3.0121 -1.9044 -9.5631 15 1 4.9532 -0.4774 -9.8393 16 1 5.0162 -2.3184 -8.2621 17 6 2.0400 -0.7212 1.2493 18 1 3.1263 -0.6442 1.2952 19 6 1.6354 -2.1954 1.1880 20 7 1.4558 -0.1036 2.4423 21 6 2.0912 -0.1937 3.6275 22 8 3.1464 -0.7863 3.7064 23 6 1.4900 0.4411 4.8550 24 6 2.3900 0.1970 6.0388 25 6 2.3591 -0.8859 6.9472 26 7 3.3204 -0.6777 7.8000 27 8 3.9142 0.3479 7.5598 28 6 3.4120 0.9673 6.4823 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 3.6481 -1.1212 -3.3986 34 1 1.9761 -1.5506 -3.8326 35 1 3.4077 1.4696 -8.6851 36 1 0.5490 -2.2724 1.1421 37 1 2.0699 -2.6550 0.3002 38 1 1.9983 -2.7092 2.0781 39 1 0.6117 0.3702 2.3794 40 1 1.3835 1.5139 4.6941 41 1 0.5103 0.0036 5.0475 42 1 1.6751 -1.7215 6.9347 43 1 3.7549 1.8969 6.0524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508498737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = -41.711368 kcal Electronic energy + Delta-G solvation = -26115.769659 eV Core-core repulsion = 22096.659431 eV Total energy + Delta-G solvation = -4019.110228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.86786 -41.31209 -40.47384 -38.06660 -35.52935 -35.08197 -34.57994 -33.16806 -32.49061 -30.92508 -29.75536 -29.33963 -27.65485 -25.74176 -24.00591 -23.28819 -22.09348 -21.36584 -20.90562 -19.90218 -18.91848 -18.62558 -18.19504 -17.90255 -17.20569 -16.87873 -16.75080 -16.45195 -16.33056 -15.87985 -15.67261 -15.44677 -15.01435 -14.65053 -14.48077 -14.35755 -14.11229 -13.99297 -13.61183 -13.34637 -13.20282 -13.15713 -13.00378 -12.89026 -12.79375 -12.58974 -12.15098 -12.05232 -11.92333 -11.72019 -11.36830 -11.14001 -11.01965 -10.93778 -10.31877 -10.27353 -10.18141 -10.13143 -8.65580 -8.34553 -6.12032 0.60637 1.23542 1.29222 1.42441 1.46674 1.56682 1.60914 1.66750 2.03961 2.27497 2.40928 2.55821 2.99742 3.32155 3.39377 3.50032 3.79998 3.82226 3.85566 3.96960 4.06739 4.13289 4.26716 4.30634 4.39681 4.48888 4.52295 4.63779 4.72192 4.73234 4.78307 4.83953 4.95108 4.97834 5.15436 5.18420 5.40581 5.42487 5.43123 5.51714 6.20109 6.45407 6.56562 7.07149 7.22609 7.28531 7.32432 8.74513 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028947 B = 0.001661 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.063602 B =16848.826705 C =17009.232282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.073 0.927 4 N -0.709 5.709 5 C 0.538 3.462 6 O -0.560 6.560 7 C -0.133 4.133 8 S -0.147 6.147 9 C -0.547 4.547 10 H 0.082 0.918 11 C 0.014 3.986 12 N -0.910 5.910 13 Si 0.997 3.003 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.259 1.259 17 C 0.147 3.853 18 H 0.071 0.929 19 C -0.164 4.164 20 N -0.710 5.710 21 C 0.513 3.487 22 O -0.581 6.581 23 C -0.055 4.055 24 C -0.198 4.198 25 C -0.004 4.004 26 N -0.405 5.405 27 O 0.077 5.923 28 C -0.041 4.041 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.414 0.586 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.418 0.582 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.205 0.795 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.294 -4.313 28.407 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.091 0.909 4 N -0.365 5.365 5 C 0.324 3.676 6 O -0.437 6.437 7 C -0.284 4.284 8 S 0.080 5.920 9 C -0.695 4.695 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.183 1.183 17 C 0.041 3.959 18 H 0.089 0.911 19 C -0.222 4.222 20 N -0.365 5.365 21 C 0.301 3.699 22 O -0.460 6.460 23 C -0.094 4.094 24 C -0.202 4.202 25 C -0.182 4.182 26 N -0.112 5.112 27 O 0.016 5.984 28 C -0.123 4.123 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.252 0.748 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.257 0.743 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.222 0.778 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -7.554 -3.306 29.350 30.486 hybrid contribution 0.236 -1.671 -1.767 2.443 sum -7.318 -4.977 27.584 28.969 Atomic orbital electron populations 1.22239 0.93349 1.03662 1.02885 1.21073 0.95722 0.96624 0.83167 0.90868 1.45851 1.67866 1.14583 1.08203 1.19987 0.76556 0.86544 0.84499 1.90689 1.50417 1.17522 1.85108 1.23397 1.05499 1.03355 0.96135 1.85527 1.86667 1.17212 1.02627 1.23213 1.50927 0.98499 0.96890 0.89967 1.26098 0.95087 0.97162 1.00711 1.70173 1.46850 1.15410 1.22248 0.84976 0.78440 0.77785 0.76924 1.19258 1.20350 1.18332 1.20838 0.98325 0.93315 0.83452 0.91068 1.22220 1.03325 0.94164 1.02461 1.45930 1.26512 1.57045 1.06985 1.21142 0.84205 0.79334 0.85205 1.90751 1.24662 1.44430 1.86131 1.20005 0.98703 1.05107 0.85607 1.21051 1.01886 0.96466 1.00844 1.25393 0.98407 1.01678 0.92771 1.73860 1.09957 1.02401 1.24971 1.84773 1.47508 1.26406 1.39693 1.26541 0.95050 1.01753 0.88923 0.94036 0.90225 0.88737 0.74760 0.87461 0.87073 0.91998 0.89920 0.90909 0.92756 0.74291 0.83948 0.84120 0.77776 0.73603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.00 71.98 0.65 -1.66 16 2 C 0.14 2.53 2.62 44.99 0.12 2.65 16 3 H 0.07 1.70 7.58 -2.38 -0.02 1.68 16 4 N -0.71 -15.95 4.99 -442.53 -2.21 -18.15 16 5 C 0.54 18.53 7.81 87.65 0.68 19.22 16 6 O -0.56 -24.27 15.52 -3.02 -0.05 -24.32 16 7 C -0.13 -5.05 6.16 71.23 0.44 -4.61 16 8 S -0.15 -8.01 20.57 -56.49 -1.16 -9.18 16 9 C -0.55 -30.87 9.50 67.95 0.65 -30.22 16 10 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 11 C 0.01 0.81 5.49 84.86 0.47 1.27 16 12 N -0.91 -55.34 13.22 21.65 0.29 -55.06 16 13 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 C 0.15 2.13 2.62 44.99 0.12 2.25 16 18 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 19 C -0.16 -1.99 9.00 71.98 0.65 -1.34 16 20 N -0.71 -6.74 4.99 -442.54 -2.21 -8.95 16 21 C 0.51 6.57 7.79 87.66 0.68 7.26 16 22 O -0.58 -13.71 15.70 -3.03 -0.05 -13.76 16 23 C -0.05 -0.26 6.28 29.10 0.18 -0.07 16 24 C -0.20 -2.29 4.82 -19.74 -0.10 -2.39 16 25 C 0.00 -0.06 12.16 85.71 1.04 0.98 16 26 N -0.40 -8.36 12.07 -59.26 -0.72 -9.07 16 27 O 0.08 1.40 11.20 71.55 0.80 2.20 16 28 C -0.04 -0.48 12.26 67.17 0.82 0.35 16 29 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.08 0.89 6.57 -2.38 -0.02 0.88 16 31 H 0.09 0.67 6.29 -2.39 -0.02 0.65 16 32 H 0.41 6.91 6.58 -92.71 -0.61 6.30 16 33 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.08 0.73 6.57 -2.38 -0.02 0.72 16 37 H 0.07 0.80 6.29 -2.39 -0.02 0.79 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.42 1.35 6.58 -92.71 -0.61 0.74 16 40 H 0.14 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.25 0.78 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -88.22 379.75 2.98 -85.24 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.15 Total: 12.15 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 6.40 Total: -6.32 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -4.84 Total: -91.23 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: 0.71 Total: -35.87 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -88.22 2.98 -85.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508498737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.534 kcal (2) G-P(sol) polarization free energy of solvation -88.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds