Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.53000 * 109.47214 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99813 * 179.97438 * 7 6 5 9 9 O 1.21676 * 120.00198 * 359.97438 * 8 7 6 10 10 C 1.46728 * 119.99737 * 180.02562 * 8 7 6 11 11 C 1.36333 * 126.64484 * 180.02562 * 10 8 7 12 12 N 1.33693 * 107.45597 * 179.97438 * 11 10 8 13 13 C 1.30617 * 108.99238 * 0.02562 * 12 11 10 14 14 O 1.33658 * 109.15412 * 359.75001 * 13 12 11 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46950 * 120.00258 * 24 22 20 27 27 H 1.48503 * 109.47177 * 240.00017 * 24 22 20 28 28 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 32 32 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 33 33 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 34 34 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 35 35 H 1.09004 * 109.46768 * 299.99665 * 6 5 4 36 36 H 1.09003 * 109.47442 * 59.99732 * 6 5 4 37 37 H 0.96999 * 119.99924 * 359.97438 * 7 6 5 38 38 H 1.08009 * 126.27417 * 359.97438 * 11 10 8 39 39 H 1.08000 * 125.41849 * 179.97438 * 13 12 11 40 40 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 41 41 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 42 42 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 43 43 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3347 2.5627 7 7 5.5349 -1.2308 2.6247 8 6 6.2078 -1.7957 3.6467 9 8 5.6028 -2.3918 4.5180 10 6 7.6701 -1.6911 3.7091 11 6 8.4824 -2.2080 4.6744 12 7 9.7401 -1.8875 4.3540 13 6 9.7340 -1.2011 3.2427 14 8 8.4741 -1.0671 2.8170 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.2657 1.1255 -7.7894 24 14 4.1629 -1.2664 -8.8641 25 1 4.3696 -2.6282 -8.3092 26 1 3.1761 -1.3284 -9.9721 27 1 5.4526 -0.7401 -9.3787 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4260 34 1 3.8531 0.4372 1.3574 35 1 3.6403 -0.8755 3.4506 36 1 3.7866 -2.3850 2.5187 37 1 6.0172 -0.7553 1.9303 38 1 8.1675 -2.7729 5.5394 39 1 10.6081 -0.8079 2.7450 40 1 2.2491 -1.6317 -1.1525 41 1 3.6494 -1.1203 -3.3979 42 1 1.9778 -1.5509 -3.8325 43 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509963582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = -94.289679 kcal Electronic energy + Delta-G solvation = -25630.332845 eV Core-core repulsion = 21608.942650 eV Total energy + Delta-G solvation = -4021.390195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.46998 -40.85395 -40.62381 -37.83838 -36.37394 -35.82352 -34.58312 -33.61621 -32.21155 -31.25720 -29.88920 -27.65720 -27.41002 -24.91450 -23.77123 -22.97955 -22.38439 -21.75887 -21.47830 -19.82823 -19.56945 -17.95200 -17.89283 -17.84135 -17.51509 -16.97323 -16.87596 -16.60813 -16.36828 -15.92237 -15.40851 -15.31846 -15.20120 -14.77776 -14.71412 -14.51329 -14.42702 -14.11120 -13.55715 -13.36403 -13.15779 -13.10559 -12.91446 -12.61149 -12.60516 -12.51883 -12.34880 -12.02725 -11.90957 -11.69792 -11.65593 -11.44026 -11.15754 -10.86588 -10.46802 -10.25743 -10.08284 -10.04485 -8.65605 -8.34669 -6.12119 -0.27022 1.28516 1.37718 1.38540 1.41198 1.48324 1.59116 1.67190 1.93587 2.09622 2.26746 2.36194 2.99560 3.25429 3.33594 3.60736 3.69609 3.84246 4.00718 4.02130 4.04624 4.27971 4.32262 4.40748 4.43983 4.51576 4.53394 4.59047 4.68921 4.72799 4.85528 4.90420 5.06168 5.14439 5.18578 5.21893 5.33648 5.38046 5.42415 5.62625 6.17707 6.20233 6.50278 6.58192 6.85515 7.07003 7.32230 8.74651 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.002065 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.561460 B =13557.987913 C =15915.118164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.128 4.128 6 C 0.121 3.879 7 N -0.708 5.708 8 C 0.608 3.392 9 O -0.551 6.551 10 C -0.131 4.131 11 C 0.050 3.950 12 N -0.528 5.528 13 C 0.226 3.774 14 O -0.193 6.193 15 N -0.707 5.707 16 C 0.535 3.465 17 O -0.566 6.566 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.084 0.916 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.202 0.798 39 H 0.304 0.696 40 H 0.414 0.586 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -8.134 24.857 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.166 4.166 6 C -0.001 4.001 7 N -0.359 5.359 8 C 0.394 3.606 9 O -0.431 6.431 10 C -0.186 4.186 11 C -0.093 4.093 12 N -0.256 5.256 13 C 0.002 3.998 14 O -0.079 6.079 15 N -0.361 5.361 16 C 0.321 3.679 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.251 0.749 38 H 0.219 0.781 39 H 0.319 0.681 40 H 0.251 0.749 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.431 -6.589 25.550 27.158 hybrid contribution 0.427 -1.487 -1.665 2.274 sum 6.858 -8.077 23.885 26.129 Atomic orbital electron populations 1.22155 0.94951 1.02872 1.01990 1.21050 0.94290 0.96980 0.84025 0.91589 1.21732 0.94088 1.02507 0.96510 1.21761 0.96605 1.01256 0.96934 1.21531 0.77650 1.01765 0.99188 1.45932 1.09120 1.55140 1.25679 1.16426 0.82965 0.79010 0.82232 1.90884 1.67610 1.44534 1.40095 1.23004 0.92690 1.07887 0.95046 1.23842 0.87106 0.98579 0.99768 1.70517 1.22965 1.16705 1.15446 1.29619 0.86158 0.93426 0.90584 1.84525 1.19273 1.59041 1.45094 1.45896 1.67350 1.14482 1.08408 1.20001 0.76706 0.86545 0.84671 1.90691 1.50764 1.17852 1.85161 1.23390 1.05465 1.03123 0.96216 1.85577 1.86664 1.17375 1.02888 1.23229 1.50628 0.98487 0.96872 0.89979 1.26122 0.95159 0.97178 1.00767 1.70184 1.46938 1.15450 1.22200 0.84918 0.77838 0.78247 0.77017 1.18042 1.20047 1.19907 0.89750 0.95264 0.90942 0.88140 0.88964 0.90904 0.91203 0.90739 0.90612 0.74867 0.78097 0.68079 0.74859 0.87249 0.87541 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.14 2.56 2.57 44.99 0.12 2.68 16 3 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 4 C -0.11 -1.07 4.75 30.59 0.15 -0.92 16 5 C -0.13 -1.34 5.22 30.59 0.16 -1.18 16 6 C 0.12 1.39 5.67 86.38 0.49 1.88 16 7 N -0.71 -9.60 5.55 -467.04 -2.59 -12.19 16 8 C 0.61 11.16 7.79 86.46 0.67 11.83 16 9 O -0.55 -13.35 16.89 -4.27 -0.07 -13.43 16 10 C -0.13 -2.16 7.18 24.05 0.17 -1.99 16 11 C 0.05 0.82 11.66 83.97 0.98 1.79 16 12 N -0.53 -8.11 11.26 -315.10 -3.55 -11.65 16 13 C 0.23 1.99 13.21 130.42 1.72 3.72 16 14 O -0.19 -2.46 10.57 -7.04 -0.07 -2.53 16 15 N -0.71 -15.33 4.53 -442.54 -2.00 -17.33 16 16 C 0.54 18.41 7.81 87.66 0.68 19.09 16 17 O -0.57 -25.12 15.53 -3.03 -0.05 -25.16 16 18 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 19 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 20 C -0.54 -30.58 9.50 67.96 0.65 -29.93 16 21 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 22 C 0.01 0.70 5.49 84.86 0.47 1.17 16 23 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 24 Si 1.00 43.00 29.55 68.60 2.03 45.02 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 26 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.83 7.75 -2.39 -0.02 0.81 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.41 4.48 8.27 -92.71 -0.77 3.72 16 38 H 0.20 2.84 8.06 -2.91 -0.02 2.81 16 39 H 0.30 -0.86 8.06 -2.91 -0.02 -0.89 16 40 H 0.41 6.18 8.60 -92.71 -0.80 5.38 16 41 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 42 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 43 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -85.13 391.35 -0.33 -85.45 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -0.51 Total: 15.01 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 7.38 Total: 1.38 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -7.86 Total: -96.30 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.19 Total: -41.12 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -85.13 -0.33 -85.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509963582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.835 kcal (2) G-P(sol) polarization free energy of solvation -85.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds