Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36447 * 124.84723 * 2 1 4 4 C 1.34490 * 108.85132 * 180.02562 * 3 2 1 5 5 C 1.46688 * 106.33415 * 0.02562 * 4 3 2 6 6 C 1.47260 * 126.94114 * 179.97438 * 5 4 3 7 7 O 1.21625 * 120.00064 * 180.02562 * 6 5 4 8 8 N 1.34779 * 120.00308 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.00531 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47008 * 325.00296 * 9 8 6 11 11 C 1.53004 * 109.47171 * 84.99693 * 9 8 6 12 12 O 1.42898 * 109.46466 * 65.00228 * 11 9 8 13 13 C 1.52996 * 109.47509 * 205.00222 * 9 8 6 14 14 N 1.46498 * 109.47059 * 54.99655 * 13 9 8 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 9 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19 25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19 27 27 C 1.34656 * 124.84914 * 180.33672 * 2 1 3 28 28 H 1.08993 * 109.47288 * 89.97128 * 1 2 3 29 29 H 1.09005 * 109.47029 * 209.97725 * 1 2 3 30 30 H 1.09005 * 109.47098 * 329.96900 * 1 2 3 31 31 H 1.07999 * 125.57525 * 0.04821 * 3 2 1 32 32 H 1.07999 * 126.83127 * 180.02562 * 4 3 2 33 33 H 0.97009 * 119.99558 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47343 * 185.00159 * 11 9 8 35 35 H 1.09004 * 109.46984 * 305.00700 * 11 9 8 36 36 H 0.96700 * 113.99771 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.47066 * 294.99922 * 13 9 8 38 38 H 1.08994 * 109.46974 * 175.00070 * 13 9 8 39 39 H 0.97001 * 120.00384 * 0.02562 * 14 13 9 40 40 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 41 41 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 42 42 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 43 43 H 1.08000 * 125.80300 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0016 6 6 4.7284 -1.5957 -0.0030 7 8 4.5885 -2.8039 -0.0042 8 7 5.9654 -1.0606 -0.0030 9 6 7.1414 -1.9341 -0.0038 10 1 6.9313 -2.8269 0.5851 11 6 7.4755 -2.3382 -1.4412 12 8 7.8639 -1.1805 -2.1833 13 6 8.3305 -1.1891 0.6060 14 7 7.9683 -0.6984 1.9380 15 6 8.8677 -0.0129 2.6712 16 8 9.9753 0.2022 2.2262 17 6 8.4972 0.4866 4.0439 18 16 9.9059 1.3629 4.7677 19 6 9.2137 1.8245 6.3209 20 1 8.1978 1.5491 6.5627 21 6 9.9745 2.5413 7.2341 22 7 11.2129 2.8766 6.9397 23 14 9.2405 3.0314 8.8805 24 1 8.8399 1.8115 9.6266 25 1 10.2495 3.7846 9.6678 26 1 8.0486 3.8881 8.6558 27 6 2.2345 -1.1051 -0.0065 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 1.8828 2.1373 0.0007 32 1 4.3981 1.4017 -0.0003 33 1 6.0769 -0.0969 -0.0016 34 1 8.2943 -3.0577 -1.4354 35 1 6.5984 -2.7897 -1.9049 36 1 8.0902 -1.3623 -3.1057 37 1 8.5970 -0.3461 -0.0317 38 1 9.1807 -1.8663 0.6871 39 1 7.0826 -0.8706 2.2941 40 1 7.6481 1.1656 3.9666 41 1 8.2298 -0.3587 4.6781 42 1 11.7443 3.3778 7.5777 43 1 1.8767 -2.1240 -0.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510854424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = -103.441883 kcal Electronic energy + Delta-G solvation = -26423.522689 eV Core-core repulsion = 22401.735625 eV Total energy + Delta-G solvation = -4021.787064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13308 -40.94561 -40.14070 -38.17827 -36.35988 -34.69782 -34.56473 -33.65850 -31.79229 -30.42046 -29.94386 -27.69806 -27.39792 -26.41342 -24.02543 -22.07986 -21.73993 -21.02079 -20.68724 -19.83550 -18.97043 -18.42975 -17.81045 -17.64605 -16.93835 -16.86650 -16.51674 -16.37470 -16.30157 -15.85381 -15.70190 -15.18361 -14.92801 -14.75408 -14.66536 -14.47274 -14.32369 -13.94363 -13.86223 -13.38679 -13.27186 -13.15832 -13.10667 -12.96505 -12.87056 -12.85038 -12.63069 -12.34521 -11.73645 -11.15060 -11.11802 -10.98404 -10.83405 -10.27210 -10.17609 -10.13776 -9.51090 -9.27755 -8.65228 -8.33265 -6.11262 0.77951 1.27139 1.44740 1.47002 1.53111 1.57044 1.60959 1.90117 2.21295 2.29002 2.42314 2.59210 3.00572 3.32504 3.34452 3.61424 3.93615 3.98230 4.01308 4.07725 4.09736 4.26521 4.30875 4.36343 4.47495 4.50724 4.51620 4.58896 4.61553 4.70328 4.75479 4.94463 5.02733 5.15257 5.34485 5.42772 5.47906 5.78597 6.08559 6.20893 6.35077 6.43578 6.61705 6.89356 7.07765 7.21034 7.30393 8.75707 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.002555 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.560618 B =10954.945173 C =13211.732758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.444 5.444 3 C -0.013 4.013 4 C -0.185 4.185 5 C -0.268 4.268 6 C 0.593 3.407 7 O -0.592 6.592 8 N -0.708 5.708 9 C 0.145 3.855 10 H 0.105 0.895 11 C 0.073 3.927 12 O -0.582 6.582 13 C 0.123 3.877 14 N -0.713 5.713 15 C 0.536 3.464 16 O -0.562 6.562 17 C -0.130 4.130 18 S -0.147 6.147 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.261 1.261 27 C 0.070 3.930 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.195 0.805 32 H 0.151 0.849 33 H 0.409 0.591 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.397 0.603 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.411 0.589 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.425 -8.190 -19.079 32.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.118 5.118 3 C -0.140 4.140 4 C -0.208 4.208 5 C -0.278 4.278 6 C 0.384 3.616 7 O -0.475 6.475 8 N -0.358 5.358 9 C 0.040 3.960 10 H 0.123 0.877 11 C -0.006 4.006 12 O -0.390 6.390 13 C -0.001 4.001 14 N -0.367 5.367 15 C 0.322 3.678 16 O -0.440 6.440 17 C -0.282 4.282 18 S 0.081 5.919 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.188 1.188 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.067 4.067 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.212 0.788 32 H 0.169 0.831 33 H 0.245 0.755 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.247 0.753 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.248 0.752 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -23.008 -8.274 -19.225 31.103 hybrid contribution -1.321 0.116 0.996 1.659 sum -24.330 -8.157 -18.228 31.476 Atomic orbital electron populations 1.22446 0.74338 1.06270 1.04896 1.43935 1.08352 1.05207 1.54293 1.22252 0.90231 0.92569 1.08978 1.22259 0.97521 0.92585 1.08483 1.20368 0.92569 0.94094 1.20750 1.17646 0.82987 0.86713 0.74210 1.90731 1.87135 1.16022 1.53571 1.45704 1.04340 1.10788 1.75004 1.21283 0.84086 0.94480 0.96193 0.87685 1.22441 0.99527 0.88008 0.90651 1.86445 1.90110 1.33856 1.28598 1.21524 0.96744 0.99452 0.82398 1.45732 1.16680 1.56642 1.17671 1.20011 0.84335 0.77286 0.86137 1.90698 1.23094 1.57665 1.72493 1.23372 1.04179 1.04322 0.96279 1.85543 1.18324 1.69930 1.18150 1.23172 1.02404 1.41726 1.02234 0.90019 1.26128 0.95049 0.94815 1.03146 1.70175 1.09487 1.37509 1.37557 0.85008 0.78070 0.78691 0.76245 1.18768 1.20351 1.18598 1.21964 0.89766 0.92733 1.02254 0.89320 0.88453 0.87773 0.78791 0.83126 0.75487 0.90537 0.93108 0.75286 0.90716 0.90171 0.75228 0.87240 0.87505 0.91977 0.80142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.19 11.03 127.77 1.41 1.60 16 2 N -0.44 -5.29 3.09 -547.88 -1.69 -6.98 16 3 C -0.01 -0.17 11.34 83.12 0.94 0.77 16 4 C -0.18 -3.16 10.56 23.62 0.25 -2.91 16 5 C -0.27 -5.52 6.29 -19.04 -0.12 -5.64 16 6 C 0.59 14.07 7.77 86.61 0.67 14.74 16 7 O -0.59 -17.32 16.58 -4.11 -0.07 -17.39 16 8 N -0.71 -14.26 4.46 -445.96 -1.99 -16.25 16 9 C 0.14 2.85 2.53 44.99 0.11 2.97 16 10 H 0.11 2.15 7.58 -2.39 -0.02 2.13 16 11 C 0.07 1.22 6.85 71.98 0.49 1.71 16 12 O -0.58 -9.80 12.64 -148.98 -1.88 -11.68 16 13 C 0.12 2.91 5.12 86.38 0.44 3.35 16 14 N -0.71 -19.10 5.39 -463.07 -2.49 -21.59 16 15 C 0.54 20.24 7.85 87.66 0.69 20.92 16 16 O -0.56 -26.30 15.86 -3.04 -0.05 -26.35 16 17 C -0.13 -5.28 6.16 71.24 0.44 -4.85 16 18 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 19 C -0.55 -31.55 9.50 67.96 0.65 -30.91 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 23 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 C 0.07 1.18 11.12 83.92 0.93 2.12 16 28 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.10 0.13 8.13 -2.38 -0.02 0.11 16 30 H 0.10 0.02 8.13 -2.38 -0.02 0.00 16 31 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.15 2.28 7.70 -2.91 -0.02 2.26 16 33 H 0.41 7.82 7.73 -92.70 -0.72 7.10 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.40 3.31 9.12 -74.06 -0.68 2.63 16 37 H 0.07 2.00 7.39 -2.38 -0.02 1.98 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 39 H 0.41 9.20 8.14 -92.71 -0.75 8.45 16 40 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 41 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.27 15.57 8.31 -92.72 -0.77 14.80 16 43 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -86.10 389.27 -0.73 -86.83 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -1.08 Total: 27.84 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 7.38 Total: 5.12 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -5.89 Total: -100.83 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -2.00 Total: -55.42 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -86.10 -0.73 -86.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510854424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.614 kcal (2) G-P(sol) polarization free energy of solvation -86.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds