Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36446 * 124.84908 * 2 1 4 4 C 1.34486 * 108.85342 * 180.02562 * 3 2 1 5 5 C 1.46684 * 106.33434 * 359.97438 * 4 3 2 6 6 C 1.47269 * 126.94053 * 180.02562 * 5 4 3 7 7 O 1.21627 * 119.99748 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00247 * 0.02688 * 6 5 4 9 9 C 1.46497 * 120.00370 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46974 * 34.99498 * 9 8 6 11 11 C 1.53001 * 109.46890 * 274.99599 * 9 8 6 12 12 O 1.42905 * 109.47321 * 295.00118 * 11 9 8 13 13 C 1.52992 * 109.47350 * 154.99569 * 9 8 6 14 14 N 1.46499 * 109.47267 * 304.99849 * 13 9 8 15 15 C 1.34784 * 119.99971 * 180.02562 * 14 13 9 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 14 13 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 14 13 18 18 S 1.81006 * 109.46975 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00155 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99670 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99873 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99940 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00197 * 23 21 19 25 25 H 1.48497 * 109.47572 * 209.99914 * 23 21 19 26 26 H 1.48498 * 109.47329 * 330.00770 * 23 21 19 27 27 C 1.34660 * 124.84827 * 180.33344 * 2 1 3 28 28 H 1.09001 * 109.47061 * 89.97965 * 1 2 3 29 29 H 1.09006 * 109.46787 * 209.97696 * 1 2 3 30 30 H 1.08992 * 109.46966 * 329.97832 * 1 2 3 31 31 H 1.08000 * 125.57080 * 0.03563 * 3 2 1 32 32 H 1.08007 * 126.83224 * 180.02562 * 4 3 2 33 33 H 0.97005 * 119.99405 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.47061 * 54.99464 * 11 9 8 35 35 H 1.08994 * 109.47303 * 175.00016 * 11 9 8 36 36 H 0.96691 * 113.99929 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.47330 * 184.99753 * 13 9 8 38 38 H 1.09005 * 109.47124 * 64.99957 * 13 9 8 39 39 H 0.96999 * 119.99984 * 359.97438 * 14 13 9 40 40 H 1.09005 * 109.47403 * 300.00056 * 17 15 14 41 41 H 1.09002 * 109.47422 * 60.00295 * 17 15 14 42 42 H 0.97005 * 119.99693 * 180.02562 * 22 21 19 43 43 H 1.07998 * 125.80939 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0003 6 6 4.7285 -1.5957 -0.0002 7 8 4.5886 -2.8040 -0.0005 8 7 5.9654 -1.0606 0.0002 9 6 7.1415 -1.9341 -0.0003 10 1 6.9312 -2.8262 -0.5902 11 6 7.4759 -2.3398 1.4365 12 8 7.8644 -1.1830 2.1801 13 6 8.3304 -1.1883 -0.6094 14 7 7.9679 -0.6961 -1.9408 15 6 8.8656 -0.0053 -2.6713 16 8 9.9717 0.2130 -2.2245 17 6 8.4928 0.5006 -4.0410 18 16 9.8999 1.3817 -4.7623 19 6 9.2059 1.8491 -6.3130 20 1 8.1898 1.5741 -6.5547 21 6 9.9651 2.5707 -7.2237 22 7 9.4464 2.9203 -8.3820 23 14 11.7222 3.0468 -6.8053 24 1 12.6465 1.9770 -7.2597 25 1 12.0659 4.3204 -7.4873 26 1 11.8513 3.2214 -5.3362 27 6 2.2345 -1.1051 -0.0064 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5141 31 1 1.8828 2.1373 0.0005 32 1 4.3981 1.4017 -0.0003 33 1 6.0769 -0.0970 0.0000 34 1 6.5988 -2.7918 1.8999 35 1 8.2947 -3.0592 1.4297 36 1 8.0916 -1.3660 3.1020 37 1 9.1807 -1.8654 -0.6915 38 1 8.5969 -0.3461 0.0292 39 1 7.0822 -0.8679 -2.2969 40 1 8.2262 -0.3418 -4.6794 41 1 7.6427 1.1779 -3.9594 42 1 9.9771 3.4243 -9.0186 43 1 1.8768 -2.1241 -0.0128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001510854425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = -71.868594 kcal Electronic energy + Delta-G solvation = -26463.180648 eV Core-core repulsion = 22442.762704 eV Total energy + Delta-G solvation = -4020.417944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52934 -39.92629 -38.95486 -37.36500 -35.40923 -33.65268 -33.06716 -32.41235 -30.73134 -29.49532 -29.04472 -26.95015 -25.72867 -25.35912 -23.29210 -21.29604 -20.42405 -20.34540 -19.95328 -18.38958 -17.80564 -17.73067 -16.66287 -16.38409 -16.09593 -15.80969 -15.35979 -15.13126 -15.07170 -14.91023 -14.54651 -14.27590 -13.92714 -13.69304 -13.61641 -13.41788 -13.22166 -12.93068 -12.87641 -12.76010 -12.69197 -12.35298 -12.19540 -11.85114 -11.50139 -11.23689 -10.98483 -10.58086 -10.37728 -10.02995 -9.83408 -9.50673 -9.29882 -8.99206 -8.92720 -8.91853 -8.63867 -8.46767 -6.88545 -6.26448 -3.97746 1.51414 2.13187 2.42601 2.78710 3.01375 3.11610 3.33326 3.36131 3.41268 3.53010 3.70149 3.98930 4.27422 4.35667 4.46183 4.58488 4.63276 4.64434 4.75650 4.86219 4.90625 4.94001 5.07680 5.12650 5.16572 5.21544 5.29403 5.39406 5.58259 5.60631 5.77963 5.80877 5.92360 6.06210 6.27263 6.43003 6.54973 6.68880 6.86259 7.33095 7.43378 7.64305 7.96765 8.15926 8.44514 8.53200 9.19863 10.82847 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.002533 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.866740 B =11051.073089 C =13001.946840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.448 5.448 3 C -0.017 4.017 4 C -0.165 4.165 5 C -0.237 4.237 6 C 0.595 3.405 7 O -0.558 6.558 8 N -0.715 5.715 9 C 0.140 3.860 10 H 0.107 0.893 11 C 0.067 3.933 12 O -0.567 6.567 13 C 0.117 3.883 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C 0.075 3.925 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.406 0.594 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.379 0.621 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.400 0.600 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.270 0.730 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 -8.549 22.987 30.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.123 5.123 3 C -0.143 4.143 4 C -0.189 4.189 5 C -0.247 4.247 6 C 0.385 3.615 7 O -0.438 6.438 8 N -0.366 5.366 9 C 0.035 3.965 10 H 0.125 0.875 11 C -0.012 4.012 12 O -0.372 6.372 13 C -0.008 4.008 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.518 5.518 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.060 4.060 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.242 0.758 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.226 0.774 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.234 0.766 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.541 -8.625 22.982 29.600 hybrid contribution -0.965 0.143 -0.306 1.022 sum -17.505 -8.482 22.677 29.877 Atomic orbital electron populations 1.22140 0.76795 1.04669 1.03745 1.43645 1.06858 1.05959 1.55851 1.21789 0.90586 0.91345 1.10583 1.22088 0.96354 0.93156 1.07313 1.20275 0.92403 0.93370 1.18656 1.17398 0.82342 0.86962 0.74820 1.90763 1.86672 1.14699 1.51669 1.45754 1.04599 1.10678 1.75595 1.21309 0.85005 0.95045 0.95189 0.87521 1.22531 0.99056 0.87810 0.91821 1.86487 1.90041 1.33599 1.27065 1.21500 0.95809 0.99734 0.83722 1.45959 1.17218 1.58282 1.17753 1.20256 0.84475 0.77133 0.86417 1.90702 1.21229 1.55820 1.71560 1.23279 1.04935 1.03954 0.95289 1.84773 1.17808 1.69388 1.19542 1.22326 1.03439 1.41233 0.99793 0.89409 1.24717 0.98624 0.94115 0.93903 1.69944 1.37477 1.37348 1.07039 0.86729 0.84495 0.78932 0.81658 1.19225 1.19987 1.15883 1.21772 0.89810 0.91762 1.02676 0.90479 0.89597 0.89510 0.81508 0.83536 0.75831 0.92562 0.92388 0.77369 0.90237 0.89707 0.76566 0.88546 0.88456 0.91974 0.80891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.03 59.85 0.66 0.86 16 2 N -0.45 -3.12 3.09 -124.52 -0.38 -3.50 16 3 C -0.02 -0.13 11.34 -16.83 -0.19 -0.32 16 4 C -0.17 -1.48 10.56 -37.50 -0.40 -1.87 16 5 C -0.24 -2.48 6.29 -103.35 -0.65 -3.13 16 6 C 0.60 6.99 7.77 -12.59 -0.10 6.90 16 7 O -0.56 -8.05 16.58 5.25 0.09 -7.97 16 8 N -0.71 -7.16 4.46 -54.94 -0.25 -7.41 16 9 C 0.14 1.37 2.53 -67.94 -0.17 1.20 16 10 H 0.11 1.10 7.58 -51.93 -0.39 0.70 16 11 C 0.07 0.57 6.85 37.16 0.25 0.82 16 12 O -0.57 -4.85 12.64 -35.23 -0.45 -5.29 16 13 C 0.12 1.35 5.12 -4.05 -0.02 1.33 16 14 N -0.74 -9.71 5.39 -60.30 -0.32 -10.04 16 15 C 0.53 9.57 7.85 -10.98 -0.09 9.49 16 16 O -0.52 -11.30 15.86 5.56 0.09 -11.21 16 17 C -0.12 -2.44 6.16 36.00 0.22 -2.22 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 20 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 21 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.81 13.97 55.49 0.78 -26.04 16 23 Si 0.86 21.97 27.74 -169.99 -4.71 17.25 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16 27 C 0.08 0.67 11.12 -16.84 -0.19 0.48 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.15 8.13 -51.93 -0.42 -0.27 16 30 H 0.09 0.13 8.13 -51.93 -0.42 -0.29 16 31 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.15 1.14 7.70 -52.48 -0.40 0.73 16 33 H 0.41 3.85 7.73 -40.82 -0.32 3.53 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 1.69 9.12 45.56 0.42 2.10 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.10 7.39 -51.93 -0.38 0.71 16 39 H 0.40 4.56 8.14 -40.82 -0.33 4.23 16 40 H 0.10 1.79 8.14 -51.91 -0.42 1.36 16 41 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 42 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -38.59 386.59 -7.00 -45.59 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.22 Total: 6.96 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.45 Total: 1.45 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.18 Total: -46.99 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.27 Total: -24.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.59 -7.00 -45.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510854425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.278 kcal (2) G-P(sol) polarization free energy of solvation -38.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds