Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36446 * 124.84908 * 2 1 4 4 C 1.34486 * 108.85342 * 180.02562 * 3 2 1 5 5 C 1.46684 * 106.33434 * 359.97438 * 4 3 2 6 6 C 1.47269 * 126.94053 * 180.02562 * 5 4 3 7 7 O 1.21627 * 119.99748 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00247 * 0.02688 * 6 5 4 9 9 C 1.46497 * 120.00370 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46974 * 34.99498 * 9 8 6 11 11 C 1.53001 * 109.46890 * 274.99599 * 9 8 6 12 12 O 1.42905 * 109.47321 * 295.00118 * 11 9 8 13 13 C 1.52992 * 109.47350 * 154.99569 * 9 8 6 14 14 N 1.46499 * 109.47267 * 304.99849 * 13 9 8 15 15 C 1.34784 * 119.99971 * 180.02562 * 14 13 9 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 14 13 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 14 13 18 18 S 1.81006 * 109.46975 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00155 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99670 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99873 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99940 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00197 * 23 21 19 25 25 H 1.48497 * 109.47572 * 209.99914 * 23 21 19 26 26 H 1.48498 * 109.47329 * 330.00770 * 23 21 19 27 27 C 1.34660 * 124.84827 * 180.33344 * 2 1 3 28 28 H 1.09001 * 109.47061 * 89.97965 * 1 2 3 29 29 H 1.09006 * 109.46787 * 209.97696 * 1 2 3 30 30 H 1.08992 * 109.46966 * 329.97832 * 1 2 3 31 31 H 1.08000 * 125.57080 * 0.03563 * 3 2 1 32 32 H 1.08007 * 126.83224 * 180.02562 * 4 3 2 33 33 H 0.97005 * 119.99405 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.47061 * 54.99464 * 11 9 8 35 35 H 1.08994 * 109.47303 * 175.00016 * 11 9 8 36 36 H 0.96691 * 113.99929 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.47330 * 184.99753 * 13 9 8 38 38 H 1.09005 * 109.47124 * 64.99957 * 13 9 8 39 39 H 0.96999 * 119.99984 * 359.97438 * 14 13 9 40 40 H 1.09005 * 109.47403 * 300.00056 * 17 15 14 41 41 H 1.09002 * 109.47422 * 60.00295 * 17 15 14 42 42 H 0.97005 * 119.99693 * 180.02562 * 22 21 19 43 43 H 1.07998 * 125.80939 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0003 6 6 4.7285 -1.5957 -0.0002 7 8 4.5886 -2.8040 -0.0005 8 7 5.9654 -1.0606 0.0002 9 6 7.1415 -1.9341 -0.0003 10 1 6.9312 -2.8262 -0.5902 11 6 7.4759 -2.3398 1.4365 12 8 7.8644 -1.1830 2.1801 13 6 8.3304 -1.1883 -0.6094 14 7 7.9679 -0.6961 -1.9408 15 6 8.8656 -0.0053 -2.6713 16 8 9.9717 0.2130 -2.2245 17 6 8.4928 0.5006 -4.0410 18 16 9.8999 1.3817 -4.7623 19 6 9.2059 1.8491 -6.3130 20 1 8.1898 1.5741 -6.5547 21 6 9.9651 2.5707 -7.2237 22 7 9.4464 2.9203 -8.3820 23 14 11.7222 3.0468 -6.8053 24 1 12.6465 1.9770 -7.2597 25 1 12.0659 4.3204 -7.4873 26 1 11.8513 3.2214 -5.3362 27 6 2.2345 -1.1051 -0.0064 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5141 31 1 1.8828 2.1373 0.0005 32 1 4.3981 1.4017 -0.0003 33 1 6.0769 -0.0970 0.0000 34 1 6.5988 -2.7918 1.8999 35 1 8.2947 -3.0592 1.4297 36 1 8.0916 -1.3660 3.1020 37 1 9.1807 -1.8654 -0.6915 38 1 8.5969 -0.3461 0.0292 39 1 7.0822 -0.8679 -2.2969 40 1 8.2262 -0.3418 -4.6794 41 1 7.6427 1.1779 -3.9594 42 1 9.9771 3.4243 -9.0186 43 1 1.8768 -2.1241 -0.0128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510854425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -103.145097 kcal Electronic energy + Delta-G solvation = -26464.536899 eV Core-core repulsion = 22442.762704 eV Total energy + Delta-G solvation = -4021.774195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13448 -40.97073 -40.16398 -38.18107 -36.36952 -34.72344 -34.64792 -33.66284 -31.83040 -30.45967 -29.95227 -27.87328 -27.40422 -26.45325 -24.02976 -22.08315 -21.78549 -21.02466 -20.69476 -19.89135 -18.97471 -18.42912 -17.86657 -17.66930 -17.10099 -16.93576 -16.55351 -16.37602 -16.26565 -15.85970 -15.64627 -15.20339 -14.95721 -14.88336 -14.75009 -14.54841 -14.46046 -13.96077 -13.88848 -13.43772 -13.33239 -13.27068 -13.13392 -13.00774 -12.92591 -12.89150 -12.67178 -12.32731 -11.85444 -11.16369 -11.15566 -11.03139 -10.83645 -10.53144 -10.18944 -10.15084 -9.51308 -9.27894 -8.98560 -8.50799 -6.21472 0.77761 0.99075 1.32621 1.47615 1.52974 1.55792 1.56322 1.89918 2.17791 2.26384 2.41140 2.58725 2.72566 2.87456 3.34090 3.60761 3.83550 3.97970 4.00879 4.06466 4.09563 4.21677 4.29155 4.35738 4.47018 4.47339 4.50700 4.58708 4.61786 4.70007 4.75273 4.94142 5.02441 5.15082 5.31995 5.47481 5.71539 5.78615 6.08437 6.12247 6.34784 6.39269 6.61459 6.89336 6.94305 7.15254 7.30304 8.61753 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.002533 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.866740 B =11051.073089 C =13001.946840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.444 5.444 3 C -0.014 4.014 4 C -0.185 4.185 5 C -0.268 4.268 6 C 0.594 3.406 7 O -0.592 6.592 8 N -0.708 5.708 9 C 0.144 3.856 10 H 0.105 0.895 11 C 0.073 3.927 12 O -0.581 6.581 13 C 0.123 3.877 14 N -0.713 5.713 15 C 0.538 3.462 16 O -0.558 6.558 17 C -0.113 4.113 18 S -0.171 6.171 19 C -0.529 4.529 20 H 0.061 0.939 21 C 0.045 3.955 22 N -0.918 5.918 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.235 1.235 27 C 0.070 3.930 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.195 0.805 32 H 0.152 0.848 33 H 0.409 0.591 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.412 0.588 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.277 0.723 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 -8.487 24.462 31.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.118 5.118 3 C -0.141 4.141 4 C -0.208 4.208 5 C -0.278 4.278 6 C 0.385 3.615 7 O -0.475 6.475 8 N -0.359 5.359 9 C 0.039 3.961 10 H 0.123 0.877 11 C -0.006 4.006 12 O -0.390 6.390 13 C -0.001 4.001 14 N -0.367 5.367 15 C 0.324 3.676 16 O -0.436 6.436 17 C -0.264 4.264 18 S 0.056 5.944 19 C -0.676 4.676 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.556 5.556 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.159 1.159 27 C -0.068 4.068 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.212 0.788 32 H 0.170 0.830 33 H 0.245 0.755 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.248 0.752 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.374 -8.561 24.483 31.218 hybrid contribution -0.914 0.069 -0.682 1.142 sum -18.288 -8.492 23.801 31.194 Atomic orbital electron populations 1.22446 0.74366 1.06348 1.04805 1.43937 1.08348 1.05226 1.54288 1.22257 0.90276 0.92565 1.09000 1.22261 0.97511 0.92577 1.08453 1.20377 0.92579 0.94106 1.20736 1.17638 0.83013 0.86693 0.74204 1.90733 1.87141 1.16034 1.53552 1.45700 1.04328 1.10805 1.75025 1.21296 0.84124 0.94506 0.96219 0.87729 1.22438 0.99522 0.88035 0.90630 1.86439 1.90079 1.33851 1.28613 1.21545 0.96725 0.99534 0.82262 1.45731 1.16787 1.56300 1.17857 1.19888 0.84421 0.77426 0.85900 1.90695 1.22916 1.57787 1.72220 1.23273 1.02642 1.04110 0.96328 1.84669 1.21172 1.70629 1.17944 1.22466 1.02499 1.41080 1.01604 0.92091 1.25582 1.02552 0.94124 0.93815 1.70022 1.39239 1.38281 1.08076 0.85853 0.79701 0.79302 0.81428 1.18716 1.18316 1.15927 1.21971 0.89809 0.92727 1.02277 0.89670 0.88293 0.87610 0.78824 0.83030 0.75455 0.93222 0.90470 0.75281 0.89907 0.90497 0.75202 0.87147 0.86837 0.91364 0.80170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.21 11.03 127.77 1.41 1.62 16 2 N -0.44 -5.38 3.09 -547.88 -1.69 -7.07 16 3 C -0.01 -0.18 11.34 83.12 0.94 0.76 16 4 C -0.18 -3.13 10.56 23.62 0.25 -2.88 16 5 C -0.27 -5.49 6.29 -19.04 -0.12 -5.61 16 6 C 0.59 13.84 7.77 86.62 0.67 14.51 16 7 O -0.59 -17.15 16.58 -4.12 -0.07 -17.22 16 8 N -0.71 -13.69 4.46 -445.97 -1.99 -15.67 16 9 C 0.14 2.66 2.53 44.99 0.11 2.78 16 10 H 0.10 2.04 7.58 -2.39 -0.02 2.02 16 11 C 0.07 1.14 6.85 71.98 0.49 1.63 16 12 O -0.58 -9.07 12.64 -148.98 -1.88 -10.96 16 13 C 0.12 2.68 5.12 86.38 0.44 3.12 16 14 N -0.71 -17.70 5.39 -463.07 -2.49 -20.19 16 15 C 0.54 18.72 7.85 87.65 0.69 19.40 16 16 O -0.56 -23.85 15.86 -3.01 -0.05 -23.90 16 17 C -0.11 -4.31 6.16 71.23 0.44 -3.88 16 18 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 16 19 C -0.53 -31.04 10.04 67.95 0.68 -30.36 16 20 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 21 C 0.04 2.63 5.50 84.86 0.47 3.10 16 22 N -0.92 -56.31 13.97 21.65 0.30 -56.00 16 23 Si 0.92 45.23 27.74 68.60 1.90 47.13 16 24 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.24 -11.58 6.74 99.48 0.67 -10.91 16 27 C 0.07 1.18 11.12 83.92 0.93 2.11 16 28 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.10 0.11 8.13 -2.38 -0.02 0.09 16 30 H 0.11 0.00 8.13 -2.39 -0.02 -0.02 16 31 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 32 H 0.15 2.23 7.70 -2.91 -0.02 2.21 16 33 H 0.41 7.42 7.73 -92.70 -0.72 6.71 16 34 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.40 2.87 9.12 -74.06 -0.68 2.19 16 37 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.08 1.89 7.39 -2.38 -0.02 1.87 16 39 H 0.41 8.66 8.14 -92.71 -0.75 7.90 16 40 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 41 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 42 H 0.28 15.68 8.31 -92.70 -0.77 14.91 16 43 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -83.53 386.59 -0.72 -84.25 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -1.12 Total: 23.04 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 7.41 Total: 6.32 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -5.87 Total: -98.95 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -2.00 Total: -52.07 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -83.53 -0.72 -84.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510854425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.892 kcal (2) G-P(sol) polarization free energy of solvation -83.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds