Wall clock time and date at job start Sat Apr 11 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 N 1.46498 * 109.47384 * 185.00120 * 4 2 1 6 6 C 1.34774 * 120.00386 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99461 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00083 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.46782 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99818 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99811 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00207 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99592 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00137 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46965 * 60.00606 * 14 12 10 16 16 H 1.48499 * 109.47060 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47428 * 300.00243 * 14 12 10 18 18 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 19 19 C 1.34780 * 119.99566 * 275.00168 * 18 2 1 20 20 O 1.21280 * 120.00423 * 359.97438 * 19 18 2 21 21 C 1.50701 * 119.99795 * 180.02562 * 19 18 2 22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18 23 23 C 1.50697 * 109.47466 * 179.97438 * 22 21 19 24 24 C 1.41380 * 126.80195 * 124.70720 * 23 22 21 25 25 C 1.35454 * 103.98388 * 179.89284 * 24 23 22 26 26 O 1.34037 * 106.44750 * 0.36909 * 25 24 23 27 27 N 1.20923 * 111.56743 * 359.75103 * 26 25 24 28 28 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 30 30 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 31 31 H 1.08999 * 109.46598 * 305.00003 * 4 2 1 32 32 H 1.09001 * 109.47457 * 64.99435 * 4 2 1 33 33 H 0.97003 * 119.99635 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46864 * 299.99613 * 8 6 5 35 35 H 1.08997 * 109.47101 * 60.00111 * 8 6 5 36 36 H 0.97005 * 119.99738 * 179.97438 * 13 12 10 37 37 H 0.96995 * 120.00423 * 94.99474 * 18 2 1 38 38 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 39 39 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 40 40 H 1.09002 * 109.47153 * 299.99998 * 22 21 19 41 41 H 1.08998 * 109.47533 * 59.99628 * 22 21 19 42 42 H 1.08005 * 128.00840 * 0.02932 * 24 23 22 43 43 H 1.08007 * 126.77338 * 180.09938 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1909 7 8 3.5697 -1.8847 -3.1393 8 6 5.6749 -1.5367 -2.1308 9 16 6.2780 -2.3912 -3.6080 10 6 8.0100 -2.3769 -3.2841 11 1 8.3863 -1.9231 -2.3792 12 6 8.8905 -2.9496 -4.1913 13 7 8.4317 -3.5031 -5.2939 14 14 10.7266 -2.9338 -3.8482 15 1 10.9993 -3.6554 -2.5793 16 1 11.4443 -3.6031 -4.9627 17 1 11.1961 -1.5299 -3.7301 18 7 2.0184 -0.6907 1.1960 19 6 2.1471 -0.0184 2.3571 20 8 1.8590 1.1584 2.4116 21 6 2.6500 -0.7288 3.5873 22 6 2.7019 0.2543 4.7585 23 6 3.2042 -0.4561 5.9889 24 6 4.3079 -0.0841 6.7904 25 6 4.3415 -1.0292 7.7602 26 8 3.3297 -1.8706 7.5053 27 7 2.7115 -1.5372 6.5210 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.6053 -1.7196 -1.2953 32 1 1.7516 -0.1582 -2.1371 33 1 3.9824 -0.4622 -0.4320 34 1 6.1092 -0.5379 -2.0856 35 1 5.9636 -2.0990 -1.2429 36 1 9.0471 -3.9031 -5.9282 37 1 2.2490 -1.6318 1.1524 38 1 1.9778 -1.5511 3.8324 39 1 3.6493 -1.1205 3.3977 40 1 3.3743 1.0764 4.5133 41 1 1.7028 0.6465 4.9483 42 1 4.9695 0.7597 6.6609 43 1 5.0472 -1.0946 8.5752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526402684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:22 Heat of formation + Delta-G solvation = -25.606418 kcal Electronic energy + Delta-G solvation = -25797.517880 eV Core-core repulsion = 21779.106014 eV Total energy + Delta-G solvation = -4018.411865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.32835 -40.36429 -39.16098 -36.73103 -35.63021 -33.73636 -32.69403 -32.45385 -31.87498 -30.98441 -29.41630 -26.25036 -25.81454 -25.36609 -23.55075 -22.06931 -21.09451 -20.59737 -20.38845 -18.36019 -17.99615 -17.89084 -17.33335 -16.81255 -16.32200 -16.03040 -15.83490 -15.25448 -15.08835 -14.82788 -14.47446 -14.13793 -14.01503 -13.72252 -13.54176 -13.22503 -12.99790 -12.93553 -12.77940 -12.71509 -12.53692 -12.24575 -12.05552 -11.84352 -11.42119 -11.31774 -11.07351 -11.06001 -10.79295 -10.50885 -10.19213 -10.00943 -9.85798 -9.55413 -9.42799 -9.09446 -8.99581 -8.27765 -6.53348 -6.24126 -3.95160 1.09628 1.79848 2.28567 2.73070 2.87514 2.98690 3.03430 3.21513 3.25603 3.28717 3.65585 3.73919 4.07467 4.17929 4.30733 4.41948 4.63811 4.69415 4.74372 4.80395 4.94097 5.00414 5.08625 5.10382 5.10985 5.17948 5.31198 5.37580 5.47919 5.49463 5.51200 5.64119 5.70090 5.72380 5.83745 5.88340 6.08979 6.12565 6.49702 7.11135 7.56455 7.60478 7.84925 7.86267 8.32328 8.52906 9.21047 10.83222 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.002190 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.003825 B =12782.291163 C =15398.067649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.727 5.727 19 C 0.518 3.482 20 O -0.539 6.539 21 C -0.138 4.138 22 C -0.024 4.024 23 C 0.016 3.984 24 C -0.231 4.231 25 C -0.058 4.058 26 O 0.098 5.902 27 N -0.364 5.364 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.404 0.596 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.173 0.827 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.122 7.441 24.933 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.380 5.380 19 C 0.304 3.696 20 O -0.416 6.416 21 C -0.179 4.179 22 C -0.063 4.063 23 C -0.143 4.143 24 C -0.253 4.253 25 C -0.140 4.140 26 O 0.032 5.968 27 N -0.068 5.068 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.239 0.761 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.190 0.810 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.340 6.626 22.875 27.800 hybrid contribution 2.965 0.881 1.748 3.553 sum -11.376 7.507 24.624 28.144 Atomic orbital electron populations 1.22102 0.94011 1.02718 1.03100 1.21258 0.94987 0.97850 0.83286 0.88591 1.21618 0.81149 1.01348 0.97075 1.45995 1.06785 1.62062 1.24676 1.20329 0.89540 0.76727 0.81595 1.90714 1.69853 1.45944 1.32463 1.23530 0.93472 1.05715 1.07709 1.85401 1.04614 1.72933 1.20303 1.22819 0.91508 1.44396 1.09761 0.90991 1.24995 0.99614 0.94515 0.94451 1.70008 1.35551 1.35305 1.09396 0.86219 0.82733 0.78481 0.78042 1.19934 1.20790 1.19935 1.46158 1.67668 1.14479 1.09660 1.20582 0.77231 0.87263 0.84481 1.90721 1.49935 1.15940 1.85013 1.21638 1.03990 0.99753 0.92503 1.19709 1.03288 0.96267 0.86993 1.23686 0.95755 0.94533 1.00286 1.22816 1.01470 1.03881 0.97107 1.26068 0.94167 0.91583 1.02146 1.84850 1.33374 1.44283 1.34307 1.73845 1.17989 1.15681 0.99240 0.91993 0.91612 0.91031 0.90890 0.89934 0.76762 0.89222 0.89275 0.92099 0.76073 0.88198 0.88363 0.88621 0.89053 0.80983 0.76658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.86 16 2 C 0.13 1.10 2.73 -67.93 -0.19 0.91 16 3 H 0.10 0.93 7.58 -51.93 -0.39 0.53 16 4 C 0.11 1.16 5.23 -4.04 -0.02 1.14 16 5 N -0.74 -9.09 5.39 -60.29 -0.32 -9.41 16 6 C 0.53 9.47 7.85 -10.99 -0.09 9.38 16 7 O -0.52 -11.30 15.86 5.55 0.09 -11.21 16 8 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 14 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 N -0.73 -5.48 4.52 -53.80 -0.24 -5.72 16 19 C 0.52 4.54 7.79 -10.98 -0.09 4.46 16 20 O -0.54 -6.53 15.64 5.56 0.09 -6.44 16 21 C -0.14 -0.96 5.67 -27.88 -0.16 -1.11 16 22 C -0.02 -0.18 5.10 -27.89 -0.14 -0.32 16 23 C 0.02 0.13 6.59 -82.10 -0.54 -0.41 16 24 C -0.23 -1.38 11.12 -39.38 -0.44 -1.82 16 25 C -0.06 -0.29 12.30 29.74 0.37 0.08 16 26 O 0.10 0.79 11.20 17.18 0.19 0.98 16 27 N -0.36 -3.46 12.06 33.42 0.40 -3.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.40 4.05 8.14 -40.82 -0.33 3.72 16 34 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.40 2.51 8.60 -40.82 -0.35 2.16 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.22 0.13 8.06 -52.48 -0.42 -0.30 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -37.07 390.37 -7.05 -44.11 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.11 Total: 1.88 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.52 Total: -4.17 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.57 Total: -43.41 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.37 Total: -16.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.07 -7.05 -44.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526402684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.509 kcal (2) G-P(sol) polarization free energy of solvation -37.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds